RNA–Protein interactions for RNA: ENST00000581662.1

CDK5RAP3-221, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 557 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-221ENST00000581662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.78□□□□□ -0.2
CDK5RAP3-221ENST00000581662 CTTNBP2Q8WZ74 1663 aa13.78□□□□□ -0.2
CDK5RAP3-221ENST00000581662 NPATQ14207 1427 aa13.77□□□□□ -0.21
CDK5RAP3-221ENST00000581662 SCAPERQ9BY12 1400 aa13.77□□□□□ -0.21
CDK5RAP3-221ENST00000581662 REREQ9P2R6 1566 aa13.77□□□□□ -0.21
CDK5RAP3-221ENST00000581662 POTEAQ6S8J7 498 aa13.76□□□□□ -0.21
CDK5RAP3-221ENST00000581662 AGLP35573 1532 aa13.74□□□□□ -0.21
CDK5RAP3-221ENST00000581662 NUP153P49790 1475 aaKnown RBP13.74□□□□□ -0.21
CDK5RAP3-221ENST00000581662 PTPRKQ15262 1439 aa13.74□□□□□ -0.21
CDK5RAP3-221ENST00000581662 ZNF579Q8NAF0 562 aaKnown RBP13.74□□□□□ -0.21
CDK5RAP3-221ENST00000581662 RAPGEF6Q8TEU7 1601 aa13.73□□□□□ -0.21
CDK5RAP3-221ENST00000581662 SETD1AO15047 1707 aaKnown RBP13.73□□□□□ -0.21
CDK5RAP3-221ENST00000581662 ZNF142P52746 1687 aaPredicted RBP13.72□□□□□ -0.21
CDK5RAP3-221ENST00000581662 DIP2CQ9Y2E4 1556 aa13.72□□□□□ -0.21
CDK5RAP3-221ENST00000581662 SUPT5HO00267 1087 aaKnown RBP13.72□□□□□ -0.21
CDK5RAP3-221ENST00000581662 CLCN6P51797 869 aa13.72□□□□□ -0.21
CDK5RAP3-221ENST00000581662 CNTLNQ9NXG0 1405 aa13.72□□□□□ -0.21
CDK5RAP3-221ENST00000581662 KDM5CP41229 1560 aa13.71□□□□□ -0.22
CDK5RAP3-221ENST00000581662 FBXO3Q9UK99 471 aa13.7□□□□□ -0.22
CDK5RAP3-221ENST00000581662 SHANK2Q9UPX8 1470 aa13.69□□□□□ -0.22
CDK5RAP3-221ENST00000581662 MYO3AQ8NEV4 1616 aa13.68□□□□□ -0.22
CDK5RAP3-221ENST00000581662 CEP170BQ9Y4F5 1589 aaPredicted RBP13.67□□□□□ -0.22
CDK5RAP3-221ENST00000581662 PLCH2O75038 1416 aa13.67□□□□□ -0.22
CDK5RAP3-221ENST00000581662 TSPYL2Q9H2G4 693 aaPredicted RBP13.67□□□□□ -0.22
CDK5RAP3-221ENST00000581662 ZNF518AQ6AHZ1 1483 aa13.67□□□□□ -0.22
CDK5RAP3-221ENST00000581662 PHF12Q96QT6 1004 aa13.66□□□□□ -0.22
CDK5RAP3-221ENST00000581662 UPF1Q92900 1129 aaKnown RBP eCLIP13.65□□□□□ -0.22
CDK5RAP3-221ENST00000581662 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
CDK5RAP3-221ENST00000581662 MROH2AA6NES4 1674 aa13.64□□□□□ -0.23
CDK5RAP3-221ENST00000581662 VWDEQ8N2E2 1590 aa13.64□□□□□ -0.23
CDK5RAP3-221ENST00000581662 NEURL4Q96JN8 1562 aa13.64□□□□□ -0.23
CDK5RAP3-221ENST00000581662 ZBTB47Q9UFB7 747 aaPredicted RBP13.64□□□□□ -0.23
CDK5RAP3-221ENST00000581662 PLEKHD1A6NEE1 506 aa13.63□□□□□ -0.23
CDK5RAP3-221ENST00000581662 FAM9AQ8IZU1 332 aaPredicted RBP13.63□□□□□ -0.23
CDK5RAP3-221ENST00000581662 ESF1Q9H501 851 aaKnown RBP13.63□□□□□ -0.23
CDK5RAP3-221ENST00000581662 SAMD9Q5K651 1589 aa13.62□□□□□ -0.23
CDK5RAP3-221ENST00000581662 P3H3Q8IVL6 736 aa13.62□□□□□ -0.23
CDK5RAP3-221ENST00000581662 DCBLD2Q96PD2 775 aa13.61□□□□□ -0.23
CDK5RAP3-221ENST00000581662 MLH3Q9UHC1 1453 aa13.61□□□□□ -0.23
CDK5RAP3-221ENST00000581662 ZMYM3Q14202 1370 aa13.6□□□□□ -0.23
CDK5RAP3-221ENST00000581662 AFAP1Q8N556 730 aa13.59□□□□□ -0.23
CDK5RAP3-221ENST00000581662 RNF17Q9BXT8 1623 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-221ENST00000581662 GALR2O43603 387 aaPredicted RBP13.57□□□□□ -0.24
CDK5RAP3-221ENST00000581662 SUPT6HQ7KZ85 1726 aaKnown RBP13.56□□□□□ -0.24
CDK5RAP3-221ENST00000581662 A2ML1A8K2U0 1454 aa13.55□□□□□ -0.24
CDK5RAP3-221ENST00000581662 PRXQ9BXM0 1461 aa13.55□□□□□ -0.24
CDK5RAP3-221ENST00000581662 LRRC7Q96NW7 1537 aa13.55□□□□□ -0.24
CDK5RAP3-221ENST00000581662 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
CDK5RAP3-221ENST00000581662 DNMT1P26358 1616 aaKnown RBP13.54□□□□□ -0.24
CDK5RAP3-221ENST00000581662 RASEFQ8IZ41 740 aa13.54□□□□□ -0.24
CDK5RAP3-221ENST00000581662 POLR1AO95602 1720 aaPredicted RBP13.53□□□□□ -0.24
CDK5RAP3-221ENST00000581662 SYNMO15061 1565 aa13.51□□□□□ -0.25
CDK5RAP3-221ENST00000581662 POTEIP0CG38 1075 aa13.51□□□□□ -0.25
CDK5RAP3-221ENST00000581662 CCDC61Q9Y6R9 512 aa13.5□□□□□ -0.25
CDK5RAP3-221ENST00000581662 MED14O60244 1454 aa13.49□□□□□ -0.25
CDK5RAP3-221ENST00000581662 VASPP50552 380 aaPredicted RBP13.49□□□□□ -0.25
CDK5RAP3-221ENST00000581662 MYO5CQ9NQX4 1742 aa13.49□□□□□ -0.25
CDK5RAP3-221ENST00000581662 KLHL34Q8N239 644 aa13.48□□□□□ -0.25
CDK5RAP3-221ENST00000581662 STRCP1A6NGW2 1772 aa13.48□□□□□ -0.25
CDK5RAP3-221ENST00000581662 FAM135BQ49AJ0 1406 aa13.47□□□□□ -0.25
CDK5RAP3-221ENST00000581662 CDK13Q14004 1512 aaKnown RBP13.47□□□□□ -0.25
CDK5RAP3-221ENST00000581662 KIDINS220Q9ULH0 1771 aa13.46□□□□□ -0.25
CDK5RAP3-221ENST00000581662 NUBP1P53384 320 aa13.46□□□□□ -0.25
CDK5RAP3-221ENST00000581662 MS4A3Q96HJ5 214 aa13.46□□□□□ -0.25
CDK5RAP3-221ENST00000581662 MYT1LQ9UL68 1186 aa13.46□□□□□ -0.25
CDK5RAP3-221ENST00000581662 CLTCQ00610 1675 aaKnown RBP13.46□□□□□ -0.26
CDK5RAP3-221ENST00000581662 NPHP4O75161 1426 aaPredicted RBP13.46□□□□□ -0.26
CDK5RAP3-221ENST00000581662 ARHGAP5Q13017 1502 aa13.44□□□□□ -0.26
CDK5RAP3-221ENST00000581662 DEPDC5O75140 1603 aa13.44□□□□□ -0.26
CDK5RAP3-221ENST00000581662 FAM212AQ96EL1 285 aa13.44□□□□□ -0.26
CDK5RAP3-221ENST00000581662 ABCC1P33527 1531 aa13.44□□□□□ -0.26
CDK5RAP3-221ENST00000581662 KIF12Q96FN5 646 aa13.42□□□□□ -0.26
CDK5RAP3-221ENST00000581662 KIF14Q15058 1648 aa13.41□□□□□ -0.26
CDK5RAP3-221ENST00000581662 PLXNC1O60486 1568 aa13.41□□□□□ -0.26
CDK5RAP3-221ENST00000581662 ANKLE2Q86XL3 938 aa13.4□□□□□ -0.26
CDK5RAP3-221ENST00000581662 CDK12Q9NYV4 1490 aaPredicted RBP13.4□□□□□ -0.26
CDK5RAP3-221ENST00000581662 TRIM52Q96A61 297 aa13.39□□□□□ -0.27
CDK5RAP3-221ENST00000581662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.39□□□□□ -0.27
CDK5RAP3-221ENST00000581662 IQGAP1P46940 1657 aa13.39□□□□□ -0.27
CDK5RAP3-221ENST00000581662 DCAF8Q5TAQ9 597 aa13.38□□□□□ -0.27
CDK5RAP3-221ENST00000581662 LHX8Q68G74 356 aa13.38□□□□□ -0.27
CDK5RAP3-221ENST00000581662 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
CDK5RAP3-221ENST00000581662 MAP3K13O43283 966 aa13.37□□□□□ -0.27
CDK5RAP3-221ENST00000581662 LRP6O75581 1613 aa13.36□□□□□ -0.27
CDK5RAP3-221ENST00000581662 TNRQ92752 1358 aa13.35□□□□□ -0.27
CDK5RAP3-221ENST00000581662 SETBP1Q9Y6X0 1596 aa13.35□□□□□ -0.27
CDK5RAP3-221ENST00000581662 SAMD9LQ8IVG5 1584 aa13.34□□□□□ -0.27
CDK5RAP3-221ENST00000581662 ZNF772Q68DY9 489 aaPredicted RBP13.34□□□□□ -0.27
CDK5RAP3-221ENST00000581662 XIRP1Q702N8 1843 aaKnown RBP13.34□□□□□ -0.27
CDK5RAP3-221ENST00000581662 ROBO1Q9Y6N7 1651 aa13.34□□□□□ -0.27
CDK5RAP3-221ENST00000581662 JCADQ9P266 1359 aa13.33□□□□□ -0.27
CDK5RAP3-221ENST00000581662 CDC42BPBQ9Y5S2 1711 aa13.32□□□□□ -0.28
CDK5RAP3-221ENST00000581662 TROQ12816 1431 aaPredicted RBP13.31□□□□□ -0.28
CDK5RAP3-221ENST00000581662 ZC3H13Q5T200 1668 aaKnown RBP13.31□□□□□ -0.28
CDK5RAP3-221ENST00000581662 PCDHB13Q9Y5F0 798 aa13.31□□□□□ -0.28
CDK5RAP3-221ENST00000581662 A2MP01023 1474 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 PZPP20742 1482 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 NLRP1Q9C000 1473 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 KDM5DQ9BY66 1539 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms