RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 KIF3BO15066 747 aa22.28■■□□□ 1.16
MKS1-207ENST00000578789 GGT6Q6P531 493 aa22.28■■□□□ 1.16
MKS1-207ENST00000578789 PPARGC1BQ86YN6 1023 aaKnown RBP22.28■■□□□ 1.16
MKS1-207ENST00000578789 ERBINQ96RT1 1412 aa22.28■■□□□ 1.16
MKS1-207ENST00000578789 MROH1Q8NDA8 1641 aa22.28■■□□□ 1.16
MKS1-207ENST00000578789 ANKRD30AQ9BXX3 1397 aa22.27■■□□□ 1.16
MKS1-207ENST00000578789 NCOA1Q15788 1441 aa22.26■■□□□ 1.15
MKS1-207ENST00000578789 CEBPAP49715 358 aaPredicted RBP22.26■■□□□ 1.15
MKS1-207ENST00000578789 PLPPR3Q6T4P5 718 aa22.25■■□□□ 1.15
MKS1-207ENST00000578789 ZC3H13Q5T200 1668 aaKnown RBP22.25■■□□□ 1.15
MKS1-207ENST00000578789 SETD1BQ9UPS6 1966 aaKnown RBP22.25■■□□□ 1.15
MKS1-207ENST00000578789 ZMYM3Q14202 1370 aa22.25■■□□□ 1.15
MKS1-207ENST00000578789 RRBP1Q9P2E9 1410 aaKnown RBP22.24■■□□□ 1.15
MKS1-207ENST00000578789 DEPDC5O75140 1603 aa22.23■■□□□ 1.15
MKS1-207ENST00000578789 NPATQ14207 1427 aa22.23■■□□□ 1.15
MKS1-207ENST00000578789 PTPRKQ15262 1439 aa22.23■■□□□ 1.15
MKS1-207ENST00000578789 PRDM15P57071 1507 aaPredicted RBP22.22■■□□□ 1.15
MKS1-207ENST00000578789 RRP7BPQ9NSQ0 103 aa22.21■■□□□ 1.15
MKS1-207ENST00000578789 CHIC2Q9UKJ5 165 aa22.21■■□□□ 1.15
MKS1-207ENST00000578789 ABCC3O15438 1527 aa22.2■■□□□ 1.14
MKS1-207ENST00000578789 UHRF1BP1Q6BDS2 1440 aa22.18■■□□□ 1.14
MKS1-207ENST00000578789 ROCK1Q13464 1354 aa22.17■■□□□ 1.14
MKS1-207ENST00000578789 CEP152O94986 1710 aa22.17■■□□□ 1.14
MKS1-207ENST00000578789 PZPP20742 1482 aa22.16■■□□□ 1.14
MKS1-207ENST00000578789 WASHC2CQ9Y4E1 1318 aa22.15■■□□□ 1.14
MKS1-207ENST00000578789 MYO3AQ8NEV4 1616 aa22.15■■□□□ 1.14
MKS1-207ENST00000578789 ZNF142P52746 1687 aaPredicted RBP22.14■■□□□ 1.13
MKS1-207ENST00000578789 CAMSAP1Q5T5Y3 1602 aa22.13■■□□□ 1.13
MKS1-207ENST00000578789 VWDEQ8N2E2 1590 aa22.13■■□□□ 1.13
MKS1-207ENST00000578789 ANKRD50Q9ULJ7 1429 aa22.13■■□□□ 1.13
MKS1-207ENST00000578789 LMTK2Q8IWU2 1503 aa22.09■■□□□ 1.13
MKS1-207ENST00000578789 HSPA2P54652 639 aa22.08■■□□□ 1.13
MKS1-207ENST00000578789 UNC13BO14795 1591 aa22.08■■□□□ 1.12
MKS1-207ENST00000578789 SPATA31D1Q6ZQQ2 1576 aa22.08■■□□□ 1.12
MKS1-207ENST00000578789 CEP170BQ9Y4F5 1589 aaPredicted RBP22.07■■□□□ 1.12
MKS1-207ENST00000578789 ARHGAP31Q2M1Z3 1444 aa22.06■■□□□ 1.12
MKS1-207ENST00000578789 KANK1Q14678 1352 aa22.05■■□□□ 1.12
MKS1-207ENST00000578789 TNRQ92752 1358 aa22.04■■□□□ 1.12
MKS1-207ENST00000578789 ITGAEP38570 1179 aa22.04■■□□□ 1.12
MKS1-207ENST00000578789 ERVK-7P63135 1459 aa22.03■■□□□ 1.12
MKS1-207ENST00000578789 A2ML1A8K2U0 1454 aa22.03■■□□□ 1.12
MKS1-207ENST00000578789 STRCQ7RTU9 1775 aa22.02■■□□□ 1.12
MKS1-207ENST00000578789 GCC2Q8IWJ2 1684 aa22.02■■□□□ 1.12
MKS1-207ENST00000578789 FBXO31Q5XUX0 539 aaPredicted RBP22.02■■□□□ 1.12
MKS1-207ENST00000578789 EFCAB6Q5THR3 1501 aa22.01■■□□□ 1.11
MKS1-207ENST00000578789 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22■■□□□ 1.111e-8■■■■■ 27.4
MKS1-207ENST00000578789 NLRP1Q9C000 1473 aa22■■□□□ 1.11
MKS1-207ENST00000578789 TET3O43151 1660 aa21.98■■□□□ 1.11
MKS1-207ENST00000578789 IQGAP3Q86VI3 1631 aa21.98■■□□□ 1.11
MKS1-207ENST00000578789 PLA2R1Q13018 1463 aa21.97■■□□□ 1.11
MKS1-207ENST00000578789 NAIPQ13075 1403 aa21.96■■□□□ 1.11
MKS1-207ENST00000578789 CFAP65Q6ZU64 1925 aaKnown RBP21.96■■□□□ 1.11
MKS1-207ENST00000578789 HFM1A2PYH4 1435 aa21.94■■□□□ 1.1
MKS1-207ENST00000578789 RPRD2Q5VT52 1461 aaKnown RBP21.93■■□□□ 1.1
MKS1-207ENST00000578789 UGGT1Q9NYU2 1555 aa21.91■■□□□ 1.1
MKS1-207ENST00000578789 NOS1P29475 1434 aa21.9■■□□□ 1.1
MKS1-207ENST00000578789 SYNMO15061 1565 aa21.9■■□□□ 1.1
MKS1-207ENST00000578789 PTPRTO14522 1441 aa21.89■■□□□ 1.09
MKS1-207ENST00000578789 E9PCH4 1651 aa21.88■■□□□ 1.09
MKS1-207ENST00000578789 POLR1AO95602 1720 aaPredicted RBP21.88■■□□□ 1.09
MKS1-207ENST00000578789 UBR1Q8IWV7 1749 aa21.88■■□□□ 1.09
MKS1-207ENST00000578789 KDM5AP29375 1690 aaKnown RBP21.86■■□□□ 1.09
MKS1-207ENST00000578789 NUP155O75694 1391 aa21.86■■□□□ 1.09
MKS1-207ENST00000578789 PIK3C2BO00750 1634 aa21.85■■□□□ 1.09
MKS1-207ENST00000578789 DMRT2Q9Y5R5 561 aa21.85■■□□□ 1.09
MKS1-207ENST00000578789 PKD2Q13563 968 aa21.83■■□□□ 1.09
MKS1-207ENST00000578789 NEURL4Q96JN8 1562 aa21.82■■□□□ 1.08
MKS1-207ENST00000578789 THEMISQ8N1K5 641 aaPredicted RBP21.81■■□□□ 1.08
MKS1-207ENST00000578789 NCKAP5LQ9HCH0 1330 aa21.8■■□□□ 1.08
MKS1-207ENST00000578789 ADGRB3O60242 1522 aa21.79■■□□□ 1.08
MKS1-207ENST00000578789 SLIT1O75093 1534 aa21.79■■□□□ 1.08
MKS1-207ENST00000578789 ARHGAP23Q9P227 1491 aa21.77■■□□□ 1.08
MKS1-207ENST00000578789 SPHKAPQ2M3C7 1700 aa21.76■■□□□ 1.07
MKS1-207ENST00000578789 MED14O60244 1454 aa21.76■■□□□ 1.07
MKS1-207ENST00000578789 SLC52A1Q9NWF4 448 aa21.75■■□□□ 1.07
MKS1-207ENST00000578789 IDI1Q13907 227 aa21.74■■□□□ 1.07
MKS1-207ENST00000578789 ANKLE2Q86XL3 938 aa21.72■■□□□ 1.07
MKS1-207ENST00000578789 IQGAP1P46940 1657 aa21.72■■□□□ 1.07
MKS1-207ENST00000578789 TMEM131LA2VDJ0 1609 aa21.71■■□□□ 1.07
MKS1-207ENST00000578789 MYO5BQ9ULV0 1848 aa21.71■■□□□ 1.07
MKS1-207ENST00000578789 SCAF11Q99590 1463 aaKnown RBP21.71■■□□□ 1.07
MKS1-207ENST00000578789 TMEM2Q9UHN6 1383 aa21.7■■□□□ 1.06
MKS1-207ENST00000578789 NPHP4O75161 1426 aaPredicted RBP21.7■■□□□ 1.06
MKS1-207ENST00000578789 LTBP4Q8N2S1 1624 aa21.69■■□□□ 1.06
MKS1-207ENST00000578789 SETD5Q9C0A6 1442 aa21.68■■□□□ 1.06
MKS1-207ENST00000578789 TRPM2O94759 1503 aa21.68■■□□□ 1.06
MKS1-207ENST00000578789 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
MKS1-207ENST00000578789 STAG3Q9UJ98 1225 aa21.66■■□□□ 1.06
MKS1-207ENST00000578789 ACIN1Q9UKV3 1341 aaKnown RBP21.64■■□□□ 1.05
MKS1-207ENST00000578789 CLTCL1P53675 1640 aa21.64■■□□□ 1.05
MKS1-207ENST00000578789 LTKP29376 864 aa21.63■■□□□ 1.05
MKS1-207ENST00000578789 ILDR1Q86SU0 546 aaPredicted RBP21.63■■□□□ 1.05
MKS1-207ENST00000578789 ZFYVE9O95405 1425 aa21.63■■□□□ 1.05
MKS1-207ENST00000578789 TXNDC2Q86VQ3 553 aa21.61■■□□□ 1.05
MKS1-207ENST00000578789 EID1Q9Y6B2 187 aa21.61■■□□□ 1.05
MKS1-207ENST00000578789 RAB3GAP2Q9H2M9 1393 aa21.61■■□□□ 1.05
MKS1-207ENST00000578789 ZNF335Q9H4Z2 1342 aaPredicted RBP21.6■■□□□ 1.05
MKS1-207ENST00000578789 CERKQ8TCT0 537 aa21.6■■□□□ 1.05
MKS1-207ENST00000578789 SLC4A1APQ9BWU0 796 aaKnown RBP21.6■■□□□ 1.05
MKS1-207ENST00000578789 IQSEC2Q5JU85 1478 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms