RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	NUTM2D	Q5VT03	806 aa	Predicted RBP	19.73	■□□□□ 0.75
PRPF8-216	ENST00000577001	C9orf84	Q5VXU9	1444 aa		19.72	■□□□□ 0.75
PRPF8-216	ENST00000577001	CEP170	Q5SW79	1584 aa		19.72	■□□□□ 0.75
PRPF8-216	ENST00000577001	RGS3	P49796	1198 aa		19.71	■□□□□ 0.75
PRPF8-216	ENST00000577001	ROCK1	Q13464	1354 aa		19.71	■□□□□ 0.75
PRPF8-216	ENST00000577001	MYBBP1A	Q9BQG0	1328 aa	Known RBP	19.71	■□□□□ 0.75
PRPF8-216	ENST00000577001	ADAMTS8	Q9UP79	889 aa		19.7	■□□□□ 0.74
PRPF8-216	ENST00000577001	KIAA0556	O60303	1618 aa		19.69	■□□□□ 0.74
PRPF8-216	ENST00000577001	AFAP1	Q8N556	730 aa		19.69	■□□□□ 0.74
PRPF8-216	ENST00000577001	GCC2	Q8IWJ2	1684 aa		19.68	■□□□□ 0.74
PRPF8-216	ENST00000577001	RTL5	Q5HYW3	569 aa	Predicted RBP	19.66	■□□□□ 0.74
PRPF8-216	ENST00000577001	DISP3	Q9P2K9	1392 aa		19.66	■□□□□ 0.74
PRPF8-216	ENST00000577001	SMG6	Q86US8	1419 aa	Known RBP	19.65	■□□□□ 0.74
PRPF8-216	ENST00000577001	CARMIL2	Q6F5E8	1435 aa		19.65	■□□□□ 0.74
PRPF8-216	ENST00000577001	NLRP13	Q86W25	1043 aa		19.64	■□□□□ 0.74
PRPF8-216	ENST00000577001	RAPGEF6	Q8TEU7	1601 aa		19.64	■□□□□ 0.74
PRPF8-216	ENST00000577001	KTN1	Q86UP2	1357 aa	Known RBP	19.64	■□□□□ 0.73
PRPF8-216	ENST00000577001	IPO9	Q96P70	1041 aa	Known RBP	19.63	■□□□□ 0.73
PRPF8-216	ENST00000577001	PTPRG	P23470	1445 aa		19.63	■□□□□ 0.73
PRPF8-216	ENST00000577001	DNMT1	P26358	1616 aa	Known RBP	19.63	■□□□□ 0.73
PRPF8-216	ENST00000577001	PDE4A	P27815	886 aa		19.63	■□□□□ 0.73
PRPF8-216	ENST00000577001	ATP10B	O94823	1461 aa		19.62	■□□□□ 0.73
PRPF8-216	ENST00000577001	RRP7A	Q9Y3A4	280 aa	Known RBP	19.62	■□□□□ 0.73
PRPF8-216	ENST00000577001	CCDC144A	A2RUR9	1427 aa		19.62	■□□□□ 0.73
PRPF8-216	ENST00000577001	SAFB2	Q14151	953 aa	Known RBP eCLIP	19.62	■□□□□ 0.73
PRPF8-216	ENST00000577001	WDR43	Q15061	677 aa	Known RBP eCLIP	19.61	■□□□□ 0.73	3e-6	■□□□□ 10.2
PRPF8-216	ENST00000577001	NUP160	Q12769	1436 aa		19.6	■□□□□ 0.73
PRPF8-216	ENST00000577001	KNSTRN	Q9Y448	316 aa		19.6	■□□□□ 0.73
PRPF8-216	ENST00000577001	RALBP1	Q15311	655 aa		19.6	■□□□□ 0.73
PRPF8-216	ENST00000577001	ERICH6B	Q5W0A0	696 aa		19.6	■□□□□ 0.73
PRPF8-216	ENST00000577001	NEFM	P07197	916 aa		19.57	■□□□□ 0.72
PRPF8-216	ENST00000577001	PER1	O15534	1290 aa	Predicted RBP	19.57	■□□□□ 0.72
PRPF8-216	ENST00000577001	TMF1	P82094	1093 aa		19.57	■□□□□ 0.72
PRPF8-216	ENST00000577001	BCL2L13	Q9BXK5	485 aa		19.56	■□□□□ 0.72
PRPF8-216	ENST00000577001	ARX	Q96QS3	562 aa		19.55	■□□□□ 0.72
PRPF8-216	ENST00000577001	PLEKHH2	Q8IVE3	1493 aa		19.55	■□□□□ 0.72
PRPF8-216	ENST00000577001	TESK2	Q96S53	571 aa		19.54	■□□□□ 0.72
PRPF8-216	ENST00000577001	APAF1	O14727	1248 aa		19.54	■□□□□ 0.72
PRPF8-216	ENST00000577001	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.54	■□□□□ 0.72
PRPF8-216	ENST00000577001	BCAR3	O75815	825 aa		19.53	■□□□□ 0.72
PRPF8-216	ENST00000577001	FRAT1	Q92837	279 aa	Predicted RBP	19.53	■□□□□ 0.72
PRPF8-216	ENST00000577001	CFAP70	Q5T0N1	1121 aa		19.52	■□□□□ 0.72
PRPF8-216	ENST00000577001	KIF3B	O15066	747 aa		19.52	■□□□□ 0.71
PRPF8-216	ENST00000577001	DMRT2	Q9Y5R5	561 aa		19.51	■□□□□ 0.71
PRPF8-216	ENST00000577001	IL27	Q8NEV9	243 aa		19.51	■□□□□ 0.71
PRPF8-216	ENST00000577001	CHD1	O14646	1710 aa		19.49	■□□□□ 0.71
PRPF8-216	ENST00000577001	BRD4	O60885	1362 aa	Predicted RBP	19.49	■□□□□ 0.71
PRPF8-216	ENST00000577001	TMEM132E	Q6IEE7	984 aa		19.48	■□□□□ 0.71
PRPF8-216	ENST00000577001	CANX	P27824	592 aa	Known RBP	19.48	■□□□□ 0.71
PRPF8-216	ENST00000577001	PPP2R1A	P30153	589 aa		19.48	■□□□□ 0.71
PRPF8-216	ENST00000577001	CLUAP1	Q96AJ1	413 aa		19.48	■□□□□ 0.71
PRPF8-216	ENST00000577001	TRAK1	Q9UPV9	953 aa		19.47	■□□□□ 0.71
PRPF8-216	ENST00000577001	KDM5C	P41229	1560 aa		19.46	■□□□□ 0.71
PRPF8-216	ENST00000577001	MBD5	Q9P267	1494 aa		19.45	■□□□□ 0.7
PRPF8-216	ENST00000577001	ARHGAP5	Q13017	1502 aa		19.45	■□□□□ 0.7
PRPF8-216	ENST00000577001	GGT6	Q6P531	493 aa		19.45	■□□□□ 0.7
PRPF8-216	ENST00000577001	DAXX	Q9UER7	740 aa	Predicted RBP	19.45	■□□□□ 0.7
PRPF8-216	ENST00000577001	RNF123	Q5XPI4	1314 aa		19.44	■□□□□ 0.7
PRPF8-216	ENST00000577001	SPRYD3	Q8NCJ5	442 aa		19.44	■□□□□ 0.7
PRPF8-216	ENST00000577001	TNN	Q9UQP3	1299 aa		19.44	■□□□□ 0.7
PRPF8-216	ENST00000577001	RALGAPB	Q86X10	1494 aa		19.43	■□□□□ 0.7
PRPF8-216	ENST00000577001	BACH2	Q9BYV9	841 aa		19.43	■□□□□ 0.7
PRPF8-216	ENST00000577001	PLEKHH1	Q9ULM0	1364 aa		19.42	■□□□□ 0.7
PRPF8-216	ENST00000577001	PANK1	Q8TE04	598 aa		19.42	■□□□□ 0.7
PRPF8-216	ENST00000577001	LRPPRC	P42704	1394 aa	Known RBP	19.41	■□□□□ 0.7
PRPF8-216	ENST00000577001	SYCP2	Q9BX26	1530 aa		19.41	■□□□□ 0.7
PRPF8-216	ENST00000577001	PRAG1	Q86YV5	1406 aa		19.41	■□□□□ 0.7
PRPF8-216	ENST00000577001	COG6	Q9Y2V7	657 aa		19.4	■□□□□ 0.7
PRPF8-216	ENST00000577001	PLA2R1	Q13018	1463 aa		19.4	■□□□□ 0.7
PRPF8-216	ENST00000577001	ERBIN	Q96RT1	1412 aa		19.4	■□□□□ 0.7
PRPF8-216	ENST00000577001	SPAG9	O60271	1321 aa	Known RBP	19.39	■□□□□ 0.7
PRPF8-216	ENST00000577001	FAM135A	Q9P2D6	1515 aa		19.39	■□□□□ 0.69
PRPF8-216	ENST00000577001	TCERG1	O14776	1098 aa	Known RBP	19.38	■□□□□ 0.69
PRPF8-216	ENST00000577001	A2M	P01023	1474 aa		19.38	■□□□□ 0.69
PRPF8-216	ENST00000577001	GOLGA2	Q08379	1002 aa		19.38	■□□□□ 0.69
PRPF8-216	ENST00000577001	STK26	Q9P289	416 aa		19.38	■□□□□ 0.69
PRPF8-216	ENST00000577001	PARD3	Q8TEW0	1356 aa		19.37	■□□□□ 0.69
PRPF8-216	ENST00000577001	EFCAB2	Q5VUJ9	269 aa		19.37	■□□□□ 0.69
PRPF8-216	ENST00000577001	SLC12A5	Q9H2X9	1139 aa		19.37	■□□□□ 0.69
PRPF8-216	ENST00000577001	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	19.37	■□□□□ 0.69
PRPF8-216	ENST00000577001	ABCC10	Q5T3U5	1492 aa		19.36	■□□□□ 0.69
PRPF8-216	ENST00000577001	ADGRF5	Q8IZF2	1346 aa		19.36	■□□□□ 0.69
PRPF8-216	ENST00000577001	DUSP27	Q5VZP5	1158 aa		19.35	■□□□□ 0.69
PRPF8-216	ENST00000577001	ARID4B	Q4LE39	1312 aa	Predicted RBP	19.35	■□□□□ 0.69
PRPF8-216	ENST00000577001	ABCA8	O94911	1581 aa		19.35	■□□□□ 0.69
PRPF8-216	ENST00000577001	ERCC6L2	Q5T890	1561 aa		19.34	■□□□□ 0.69
PRPF8-216	ENST00000577001	CCDC141	Q6ZP82	1450 aa		19.34	■□□□□ 0.69
PRPF8-216	ENST00000577001	ADGRL2	O95490	1459 aa		19.33	■□□□□ 0.68
PRPF8-216	ENST00000577001	AMER1	Q5JTC6	1135 aa	Predicted RBP	19.33	■□□□□ 0.68
PRPF8-216	ENST00000577001	UHRF1BP1	Q6BDS2	1440 aa		19.32	■□□□□ 0.68
PRPF8-216	ENST00000577001	TRAPPC8	Q9Y2L5	1435 aa		19.32	■□□□□ 0.68
PRPF8-216	ENST00000577001	CDC42BPA	Q5VT25	1732 aa		19.32	■□□□□ 0.68
PRPF8-216	ENST00000577001	SLK	Q9H2G2	1235 aa	Predicted RBP	19.32	■□□□□ 0.68
PRPF8-216	ENST00000577001	FBLN1	P23142	703 aa		19.31	■□□□□ 0.68
PRPF8-216	ENST00000577001	CARD14	Q9BXL6	1004 aa		19.31	■□□□□ 0.68
PRPF8-216	ENST00000577001	IGHD	P01880	384 aa		19.31	■□□□□ 0.68
PRPF8-216	ENST00000577001	PPM1G	O15355	546 aa	Predicted RBP	19.29	■□□□□ 0.68
PRPF8-216	ENST00000577001	BRPF3	Q9ULD4	1205 aa		19.29	■□□□□ 0.68
PRPF8-216	ENST00000577001	PDE3B	Q13370	1112 aa		19.29	■□□□□ 0.68
PRPF8-216	ENST00000577001	MAGI2	Q86UL8	1455 aa		19.29	■□□□□ 0.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms