RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	NISCH	Q9Y2I1	1504 aa		29.12	■■■□□ 2.25
PRPF8-216	ENST00000577001	SHROOM4	Q9ULL8	1493 aa		26.6	■■□□□ 1.85
PRPF8-216	ENST00000577001	SUPT5H	O00267	1087 aa	Known RBP	26.2	■■□□□ 1.78
PRPF8-216	ENST00000577001	DCAF8L2	P0C7V8	631 aa		26.08	■■□□□ 1.76
PRPF8-216	ENST00000577001	CCDC180	Q9P1Z9	1646 aa		25	■■□□□ 1.59
PRPF8-216	ENST00000577001	EHMT2	Q96KQ7	1210 aa		24.89	■■□□□ 1.57
PRPF8-216	ENST00000577001	PCGF6	Q9BYE7	350 aa		24.87	■■□□□ 1.57
PRPF8-216	ENST00000577001	CHIC1	Q5VXU3	224 aa		24.84	■■□□□ 1.57
PRPF8-216	ENST00000577001	LOC105371045	A0A1W2PR82	267 aa		24.76	■■□□□ 1.55
PRPF8-216	ENST00000577001	MYO15B	Q96JP2	1530 aa		24.74	■■□□□ 1.55
PRPF8-216	ENST00000577001	PPARGC1B	Q86YN6	1023 aa	Known RBP	24.68	■■□□□ 1.54
PRPF8-216	ENST00000577001	ZCCHC6	Q5VYS8	1495 aa	Known RBP	24.5	■■□□□ 1.51
PRPF8-216	ENST00000577001	FAM9A	Q8IZU1	332 aa	Predicted RBP	24.48	■■□□□ 1.51
PRPF8-216	ENST00000577001	HRC	P23327	699 aa		24.34	■■□□□ 1.49
PRPF8-216	ENST00000577001	TTBK1	Q5TCY1	1321 aa	Predicted RBP	23.98	■■□□□ 1.43
PRPF8-216	ENST00000577001	TRIM41	Q8WV44	630 aa		23.9	■■□□□ 1.42
PRPF8-216	ENST00000577001	DCAF1	Q9Y4B6	1507 aa		23.82	■■□□□ 1.4
PRPF8-216	ENST00000577001	TRIM26	Q12899	539 aa	Predicted RBP	23.65	■■□□□ 1.38
PRPF8-216	ENST00000577001	ABCC9	O60706	1549 aa		23.64	■■□□□ 1.38
PRPF8-216	ENST00000577001	SCRIB	Q14160	1630 aa		23.64	■■□□□ 1.38
PRPF8-216	ENST00000577001	RSF1	Q96T23	1441 aa	Predicted RBP	23.43	■■□□□ 1.34
PRPF8-216	ENST00000577001	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	23.37	■■□□□ 1.33
PRPF8-216	ENST00000577001	RANGAP1	P46060	587 aa	Predicted RBP	23.3	■■□□□ 1.32
PRPF8-216	ENST00000577001	CECR2	Q9BXF3	1484 aa		23.29	■■□□□ 1.32
PRPF8-216	ENST00000577001	RB1CC1	Q8TDY2	1594 aa		23.26	■■□□□ 1.31
PRPF8-216	ENST00000577001	NACAD	O15069	1562 aa		23.23	■■□□□ 1.31
PRPF8-216	ENST00000577001	CCER1	Q8TC90	406 aa	Predicted RBP	23.13	■■□□□ 1.29
PRPF8-216	ENST00000577001	PABPN1	Q86U42	306 aa	Known RBP eCLIP	23.13	■■□□□ 1.29
PRPF8-216	ENST00000577001	MROH2B	Q7Z745	1585 aa		22.99	■■□□□ 1.27
PRPF8-216	ENST00000577001	UBTF	P17480	764 aa	Known RBP	22.98	■■□□□ 1.27
PRPF8-216	ENST00000577001	SCAF1	Q9H7N4	1312 aa	Known RBP	22.87	■■□□□ 1.25
PRPF8-216	ENST00000577001	ZEB1	P37275	1124 aa	Predicted RBP	22.86	■■□□□ 1.25
PRPF8-216	ENST00000577001	WIZ	O95785	1651 aa		22.86	■■□□□ 1.25
PRPF8-216	ENST00000577001	YTHDC1	Q96MU7	727 aa	Known RBP	22.81	■■□□□ 1.24
PRPF8-216	ENST00000577001	HNRNPUL2	Q1KMD3	747 aa	Known RBP	22.8	■■□□□ 1.24
PRPF8-216	ENST00000577001	ABCC8	Q09428	1581 aa		22.74	■■□□□ 1.23
PRPF8-216	ENST00000577001	UNC13A	Q9UPW8	1703 aa		22.67	■■□□□ 1.22
PRPF8-216	ENST00000577001	SOGA1	O94964	1423 aa		22.65	■■□□□ 1.22
PRPF8-216	ENST00000577001	CCDC88B	A6NC98	1476 aa		22.63	■■□□□ 1.21
PRPF8-216	ENST00000577001	NEUROD1	Q13562	356 aa		22.62	■■□□□ 1.21
PRPF8-216	ENST00000577001	DIEXF	Q68CQ4	756 aa	Known RBP	22.59	■■□□□ 1.21
PRPF8-216	ENST00000577001	RUSC2	Q8N2Y8	1516 aa		22.59	■■□□□ 1.21
PRPF8-216	ENST00000577001	CSRNP3	Q8WYN3	585 aa		22.51	■■□□□ 1.19
PRPF8-216	ENST00000577001	GTF3C3	Q9Y5Q9	886 aa		22.47	■■□□□ 1.19
PRPF8-216	ENST00000577001	CEP162	Q5TB80	1403 aa		22.41	■■□□□ 1.18
PRPF8-216	ENST00000577001	ITGAE	P38570	1179 aa		22.39	■■□□□ 1.17
PRPF8-216	ENST00000577001	BICRA	Q9NZM4	1560 aa		22.38	■■□□□ 1.17
PRPF8-216	ENST00000577001	ACIN1	Q9UKV3	1341 aa	Known RBP	22.35	■■□□□ 1.17
PRPF8-216	ENST00000577001	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	22.35	■■□□□ 1.17
PRPF8-216	ENST00000577001	APLP2	Q06481	763 aa		22.32	■■□□□ 1.16
PRPF8-216	ENST00000577001	SMARCA4	P51532	1647 aa		22.25	■■□□□ 1.15
PRPF8-216	ENST00000577001	MIER1	Q8N108	512 aa		22.21	■■□□□ 1.15
PRPF8-216	ENST00000577001	ZNF316	A6NFI3	1004 aa	Predicted RBP	22.16	■■□□□ 1.14
PRPF8-216	ENST00000577001	CENPB	P07199	599 aa	Predicted RBP	22.15	■■□□□ 1.14
PRPF8-216	ENST00000577001	ATP1B4	Q9UN42	357 aa	Predicted RBP	22.14	■■□□□ 1.13
PRPF8-216	ENST00000577001	SMARCA2	P51531	1590 aa		22.09	■■□□□ 1.13
PRPF8-216	ENST00000577001	TNIK	Q9UKE5	1360 aa		22.08	■■□□□ 1.12
PRPF8-216	ENST00000577001	WRN	Q14191	1432 aa	Predicted RBP eCLIP	22.07	■■□□□ 1.12	9e-6	■■■■■ 50.1
PRPF8-216	ENST00000577001	TOP2A	P11388	1531 aa	Known RBP	22.05	■■□□□ 1.12
PRPF8-216	ENST00000577001	P3H3	Q8IVL6	736 aa		22	■■□□□ 1.11
PRPF8-216	ENST00000577001	CLIP1	P30622	1438 aa		21.99	■■□□□ 1.11
PRPF8-216	ENST00000577001	KANK4	Q5T7N3	995 aa	Predicted RBP	21.98	■■□□□ 1.11
PRPF8-216	ENST00000577001	EIF4G1	Q04637	1599 aa	Known RBP	21.93	■■□□□ 1.1
PRPF8-216	ENST00000577001	GOLGA3	Q08378	1498 aa		21.92	■■□□□ 1.1
PRPF8-216	ENST00000577001	RAPGEF2	Q9Y4G8	1499 aa		21.91	■■□□□ 1.1
PRPF8-216	ENST00000577001	HIRIP3	Q9BW71	556 aa	Predicted RBP	21.88	■■□□□ 1.09
PRPF8-216	ENST00000577001	PEG3	Q9GZU2	1588 aa		21.84	■■□□□ 1.09
PRPF8-216	ENST00000577001	SYNJ1	O43426	1573 aa		21.82	■■□□□ 1.08
PRPF8-216	ENST00000577001	ATAD2B	Q9ULI0	1458 aa		21.8	■■□□□ 1.08
PRPF8-216	ENST00000577001	KCNH8	Q96L42	1107 aa		21.76	■■□□□ 1.07
PRPF8-216	ENST00000577001	BAZ1B	Q9UIG0	1483 aa	Known RBP	21.75	■■□□□ 1.07
PRPF8-216	ENST00000577001	PELP1	Q8IZL8	1130 aa	Known RBP	21.75	■■□□□ 1.07
PRPF8-216	ENST00000577001	BCAN	Q96GW7	911 aa		21.73	■■□□□ 1.07
PRPF8-216	ENST00000577001	FAM50A	Q14320	339 aa	Known RBP	21.72	■■□□□ 1.07
PRPF8-216	ENST00000577001	CEP164	Q9UPV0	1460 aa		21.71	■■□□□ 1.07
PRPF8-216	ENST00000577001	EEA1	Q15075	1411 aa		21.65	■■□□□ 1.06
PRPF8-216	ENST00000577001	VPS8	Q8N3P4	1428 aa		21.65	■■□□□ 1.06
PRPF8-216	ENST00000577001	SIN3A	Q96ST3	1273 aa		21.63	■■□□□ 1.05
PRPF8-216	ENST00000577001	ARID3C	A6NKF2	412 aa		21.61	■■□□□ 1.05
PRPF8-216	ENST00000577001	DDX10	Q13206	875 aa	Known RBP	21.54	■■□□□ 1.04
PRPF8-216	ENST00000577001	CNGB1	Q14028	1251 aa	Predicted RBP	21.53	■■□□□ 1.04
PRPF8-216	ENST00000577001	KIF21B	O75037	1637 aa		21.53	■■□□□ 1.04
PRPF8-216	ENST00000577001	DHX57	Q6P158	1386 aa	Known RBP	21.49	■■□□□ 1.03
PRPF8-216	ENST00000577001	NCAPD3	P42695	1498 aa		21.48	■■□□□ 1.03
PRPF8-216	ENST00000577001	ARAP1	Q96P48	1450 aa		21.45	■■□□□ 1.02
PRPF8-216	ENST00000577001	HMGXB3	Q12766	1538 aa		21.45	■■□□□ 1.02
PRPF8-216	ENST00000577001	TRIM52	Q96A61	297 aa		21.4	■■□□□ 1.02
PRPF8-216	ENST00000577001	SENP3-EIF4A1	A0A087X0R7	540 aa		21.34	■■□□□ 1.01
PRPF8-216	ENST00000577001	SUPT16H	Q9Y5B9	1047 aa	Known RBP	21.33	■■□□□ 1.01
PRPF8-216	ENST00000577001	CUX2	O14529	1486 aa		21.31	■■□□□ 1
PRPF8-216	ENST00000577001	CCNB3	Q8WWL7	1395 aa		21.31	■■□□□ 1
PRPF8-216	ENST00000577001	CC2D2A	Q9P2K1	1620 aa		21.3	■■□□□ 1
PRPF8-216	ENST00000577001	KIF27	Q86VH2	1401 aa		21.3	■■□□□ 1
PRPF8-216	ENST00000577001	CHIC2	Q9UKJ5	165 aa		21.3	■■□□□ 1
PRPF8-216	ENST00000577001	RAB3GAP2	Q9H2M9	1393 aa		21.3	■■□□□ 1
PRPF8-216	ENST00000577001	CUX1	P39880	1505 aa		21.27	■■□□□ 1
PRPF8-216	ENST00000577001	DNAJC5B	Q9UF47	199 aa		21.25	■□□□□ 0.99
PRPF8-216	ENST00000577001	IRX6	P78412	446 aa	Predicted RBP	21.24	■□□□□ 0.99
PRPF8-216	ENST00000577001	FKBP8	Q14318	412 aa		21.24	■□□□□ 0.99
PRPF8-216	ENST00000577001	PRX	Q9BXM0	1461 aa		21.2	■□□□□ 0.99

Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms