RNA–Protein interactions for RNA: ENST00000564642.1

SYNGR3-204, Transcript of synaptogyrin 3, humanhuman

TSL 2

Gene SYNGR3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGR3-204ENST00000564642 FAM50AQ14320 339 aaKnown RBP28.33■■■□□ 2.13
SYNGR3-204ENST00000564642 UHRF1BP1Q6BDS2 1440 aa28.33■■■□□ 2.13
SYNGR3-204ENST00000564642 SHANK2Q9UPX8 1470 aa28.33■■■□□ 2.13
SYNGR3-204ENST00000564642 PPARGC1BQ86YN6 1023 aaKnown RBP28.29■■■□□ 2.12
SYNGR3-204ENST00000564642 RRP7BPQ9NSQ0 103 aa28.28■■■□□ 2.12
SYNGR3-204ENST00000564642 DUOX2Q9NRD8 1548 aa28.28■■■□□ 2.12
SYNGR3-204ENST00000564642 NPATQ14207 1427 aa28.27■■■□□ 2.12
SYNGR3-204ENST00000564642 WASHC2CQ9Y4E1 1318 aa28.27■■■□□ 2.12
SYNGR3-204ENST00000564642 CHIC2Q9UKJ5 165 aa28.27■■■□□ 2.12
SYNGR3-204ENST00000564642 EIF2AK4Q9P2K8 1649 aaKnown RBP28.26■■■□□ 2.11
SYNGR3-204ENST00000564642 KIF15Q9NS87 1388 aa28.25■■■□□ 2.11
SYNGR3-204ENST00000564642 KDM5DQ9BY66 1539 aa28.24■■■□□ 2.11
SYNGR3-204ENST00000564642 FAM135AQ9P2D6 1515 aa28.24■■■□□ 2.11
SYNGR3-204ENST00000564642 ANKRD30AQ9BXX3 1397 aa28.23■■■□□ 2.11
SYNGR3-204ENST00000564642 RNF17Q9BXT8 1623 aaKnown RBP28.21■■■□□ 2.11
SYNGR3-204ENST00000564642 PTPRKQ15262 1439 aa28.21■■■□□ 2.11
SYNGR3-204ENST00000564642 CERKQ8TCT0 537 aa28.19■■■□□ 2.1
SYNGR3-204ENST00000564642 ERBINQ96RT1 1412 aa28.18■■■□□ 2.1
SYNGR3-204ENST00000564642 NCOA1Q15788 1441 aa28.15■■■□□ 2.1
SYNGR3-204ENST00000564642 ZC3H13Q5T200 1668 aaKnown RBP28.13■■■□□ 2.09
SYNGR3-204ENST00000564642 PZPP20742 1482 aa28.13■■■□□ 2.09
SYNGR3-204ENST00000564642 ADGRL2O95490 1459 aa28.12■■■□□ 2.09
SYNGR3-204ENST00000564642 MYO3AQ8NEV4 1616 aa28.11■■■□□ 2.09
SYNGR3-204ENST00000564642 FBXO31Q5XUX0 539 aaPredicted RBP28.11■■■□□ 2.09
SYNGR3-204ENST00000564642 MROH1Q8NDA8 1641 aa28.1■■■□□ 2.09
SYNGR3-204ENST00000564642 ABCC3O15438 1527 aa28.1■■■□□ 2.09
SYNGR3-204ENST00000564642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.09■■■□□ 2.09
SYNGR3-204ENST00000564642 STRCQ7RTU9 1775 aa28.09■■■□□ 2.09
SYNGR3-204ENST00000564642 DMRT2Q9Y5R5 561 aa28.08■■■□□ 2.09
SYNGR3-204ENST00000564642 CEP152O94986 1710 aa28.08■■■□□ 2.09
SYNGR3-204ENST00000564642 TNRQ92752 1358 aa28.07■■■□□ 2.08
SYNGR3-204ENST00000564642 SPATA31D1Q6ZQQ2 1576 aa28.07■■■□□ 2.08
SYNGR3-204ENST00000564642 ZNF142P52746 1687 aaPredicted RBP28.07■■■□□ 2.08
SYNGR3-204ENST00000564642 PRDM15P57071 1507 aaPredicted RBP28.05■■■□□ 2.08
SYNGR3-204ENST00000564642 KANK1Q14678 1352 aa28.05■■■□□ 2.08
SYNGR3-204ENST00000564642 CEP170BQ9Y4F5 1589 aaPredicted RBP28.05■■■□□ 2.08
SYNGR3-204ENST00000564642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.04■■■□□ 2.08
SYNGR3-204ENST00000564642 ITGAEP38570 1179 aa28.04■■■□□ 2.08
SYNGR3-204ENST00000564642 DEPDC5O75140 1603 aa28.03■■■□□ 2.08
SYNGR3-204ENST00000564642 CAMSAP1Q5T5Y3 1602 aa28.03■■■□□ 2.08
SYNGR3-204ENST00000564642 CFAP65Q6ZU64 1925 aaKnown RBP28.02■■■□□ 2.08
SYNGR3-204ENST00000564642 A2ML1A8K2U0 1454 aa28.01■■■□□ 2.07
SYNGR3-204ENST00000564642 ANKRD50Q9ULJ7 1429 aa28.01■■■□□ 2.07
SYNGR3-204ENST00000564642 ROCK1Q13464 1354 aa27.98■■■□□ 2.07
SYNGR3-204ENST00000564642 NLRP1Q9C000 1473 aa27.95■■■□□ 2.07
SYNGR3-204ENST00000564642 PTPRTO14522 1441 aa27.94■■■□□ 2.06
SYNGR3-204ENST00000564642 RRBP1Q9P2E9 1410 aaKnown RBP27.94■■■□□ 2.06
SYNGR3-204ENST00000564642 ERVK-7P63135 1459 aa27.94■■■□□ 2.06
SYNGR3-204ENST00000564642 NCKAP5LQ9HCH0 1330 aa27.93■■■□□ 2.06
SYNGR3-204ENST00000564642 ARHGAP31Q2M1Z3 1444 aa27.93■■■□□ 2.06
SYNGR3-204ENST00000564642 PLA2R1Q13018 1463 aa27.93■■■□□ 2.06
SYNGR3-204ENST00000564642 PKD2Q13563 968 aa27.92■■■□□ 2.06
SYNGR3-204ENST00000564642 VWDEQ8N2E2 1590 aa27.9■■■□□ 2.06
SYNGR3-204ENST00000564642 THEMISQ8N1K5 641 aaPredicted RBP27.9■■■□□ 2.06
SYNGR3-204ENST00000564642 LMTK2Q8IWU2 1503 aa27.89■■■□□ 2.06
SYNGR3-204ENST00000564642 UGGT1Q9NYU2 1555 aa27.89■■■□□ 2.05
SYNGR3-204ENST00000564642 ANKLE2Q86XL3 938 aa27.82■■■□□ 2.04
SYNGR3-204ENST00000564642 UNC13BO14795 1591 aa27.82■■■□□ 2.04
SYNGR3-204ENST00000564642 EFCAB6Q5THR3 1501 aa27.81■■■□□ 2.04
SYNGR3-204ENST00000564642 POLR1AO95602 1720 aaPredicted RBP27.81■■■□□ 2.04
SYNGR3-204ENST00000564642 TET3O43151 1660 aa27.77■■■□□ 2.04
SYNGR3-204ENST00000564642 UBR1Q8IWV7 1749 aa27.76■■■□□ 2.03
SYNGR3-204ENST00000564642 STAG3Q9UJ98 1225 aa27.75■■■□□ 2.03
SYNGR3-204ENST00000564642 RPRD2Q5VT52 1461 aaKnown RBP27.75■■■□□ 2.03
SYNGR3-204ENST00000564642 GCC2Q8IWJ2 1684 aa27.75■■■□□ 2.03
SYNGR3-204ENST00000564642 NUP155O75694 1391 aa27.73■■■□□ 2.03
SYNGR3-204ENST00000564642 NOS1P29475 1434 aa27.72■■■□□ 2.03
SYNGR3-204ENST00000564642 PIK3C2BO00750 1634 aa27.71■■■□□ 2.03
SYNGR3-204ENST00000564642 IQGAP3Q86VI3 1631 aa27.71■■■□□ 2.03
SYNGR3-204ENST00000564642 IDI1Q13907 227 aa27.71■■■□□ 2.03
SYNGR3-204ENST00000564642 SYNMO15061 1565 aa27.7■■■□□ 2.03
SYNGR3-204ENST00000564642 NEURL4Q96JN8 1562 aa27.7■■■□□ 2.03
SYNGR3-204ENST00000564642 SLC52A1Q9NWF4 448 aa27.69■■■□□ 2.02
SYNGR3-204ENST00000564642 ZNF335Q9H4Z2 1342 aaPredicted RBP27.67■■■□□ 2.02
SYNGR3-204ENST00000564642 NAIPQ13075 1403 aa27.67■■■□□ 2.02
SYNGR3-204ENST00000564642 LTBP4Q8N2S1 1624 aa27.67■■■□□ 2.02
SYNGR3-204ENST00000564642 NPHP4O75161 1426 aaPredicted RBP27.67■■■□□ 2.02
SYNGR3-204ENST00000564642 E9PCH4 1651 aa27.66■■■□□ 2.02
SYNGR3-204ENST00000564642 MED14O60244 1454 aa27.65■■■□□ 2.02
SYNGR3-204ENST00000564642 KDM5AP29375 1690 aaKnown RBP27.65■■■□□ 2.02
SYNGR3-204ENST00000564642 TXNDC2Q86VQ3 553 aa27.64■■■□□ 2.02
SYNGR3-204ENST00000564642 EID1Q9Y6B2 187 aa27.64■■■□□ 2.02
SYNGR3-204ENST00000564642 IQGAP1P46940 1657 aa27.62■■■□□ 2.01
SYNGR3-204ENST00000564642 SLIT1O75093 1534 aa27.62■■■□□ 2.01
SYNGR3-204ENST00000564642 HFM1A2PYH4 1435 aa27.61■■■□□ 2.01
SYNGR3-204ENST00000564642 SCAF11Q99590 1463 aaKnown RBP27.61■■■□□ 2.01
SYNGR3-204ENST00000564642 ARHGAP23Q9P227 1491 aa27.61■■■□□ 2.01
SYNGR3-204ENST00000564642 TMEM2Q9UHN6 1383 aa27.6■■■□□ 2.01
SYNGR3-204ENST00000564642 LTKP29376 864 aa27.59■■■□□ 2.01
SYNGR3-204ENST00000564642 ADGRB3O60242 1522 aa27.57■■■□□ 2
SYNGR3-204ENST00000564642 TRIM52Q96A61 297 aa27.57■■■□□ 2
SYNGR3-204ENST00000564642 CHGAP10645 457 aaKnown RBP27.54■■■□□ 2
SYNGR3-204ENST00000564642 IQSEC2Q5JU85 1478 aa27.54■■■□□ 2
SYNGR3-204ENST00000564642 MYO5BQ9ULV0 1848 aa27.53■■■□□ 2
SYNGR3-204ENST00000564642 TMEM131LA2VDJ0 1609 aa27.49■■□□□ 1.99
SYNGR3-204ENST00000564642 HDGFP51858 240 aaKnown RBP27.49■■□□□ 1.99
SYNGR3-204ENST00000564642 CPS1P31327 1500 aa27.49■■□□□ 1.99
SYNGR3-204ENST00000564642 SPHKAPQ2M3C7 1700 aa27.48■■□□□ 1.99
SYNGR3-204ENST00000564642 BCANQ96GW7 911 aa27.45■■□□□ 1.98
SYNGR3-204ENST00000564642 SLC4A1APQ9BWU0 796 aaKnown RBP27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms