RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DUOX2Q9NRD8 1548 aa20.61■□□□□ 0.89
CLK3-213ENST00000563842 ZMYM3Q14202 1370 aa20.6■□□□□ 0.89
CLK3-213ENST00000563842 ANKRD30AQ9BXX3 1397 aa20.58■□□□□ 0.88
CLK3-213ENST00000563842 KIF15Q9NS87 1388 aa20.57■□□□□ 0.88
CLK3-213ENST00000563842 UHRF1BP1Q6BDS2 1440 aa20.56■□□□□ 0.88
CLK3-213ENST00000563842 RNF17Q9BXT8 1623 aaKnown RBP20.56■□□□□ 0.88
CLK3-213ENST00000563842 NPATQ14207 1427 aa20.55■□□□□ 0.88
CLK3-213ENST00000563842 KDM5DQ9BY66 1539 aa20.55■□□□□ 0.88
CLK3-213ENST00000563842 WASHC2CQ9Y4E1 1318 aa20.54■□□□□ 0.88
CLK3-213ENST00000563842 ILDR2Q71H61 639 aa20.54■□□□□ 0.88
CLK3-213ENST00000563842 PPARGC1BQ86YN6 1023 aaKnown RBP20.54■□□□□ 0.88
CLK3-213ENST00000563842 RRP7BPQ9NSQ0 103 aa20.54■□□□□ 0.88
CLK3-213ENST00000563842 ERBINQ96RT1 1412 aa20.53■□□□□ 0.88
CLK3-213ENST00000563842 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
CLK3-213ENST00000563842 ZC3H13Q5T200 1668 aaKnown RBP20.52■□□□□ 0.88
CLK3-213ENST00000563842 DISP3Q9P2K9 1392 aa20.52■□□□□ 0.88
CLK3-213ENST00000563842 ADGRL2O95490 1459 aa20.51■□□□□ 0.87
CLK3-213ENST00000563842 NCOA1Q15788 1441 aa20.51■□□□□ 0.87
CLK3-213ENST00000563842 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLK3-213ENST00000563842 PTPRKQ15262 1439 aa20.48■□□□□ 0.87
CLK3-213ENST00000563842 HSPA2P54652 639 aa20.48■□□□□ 0.87
CLK3-213ENST00000563842 PZPP20742 1482 aa20.45■□□□□ 0.86
CLK3-213ENST00000563842 MROH1Q8NDA8 1641 aa20.45■□□□□ 0.86
CLK3-213ENST00000563842 CEP152O94986 1710 aa20.44■□□□□ 0.86
CLK3-213ENST00000563842 ABCC3O15438 1527 aa20.44■□□□□ 0.86
CLK3-213ENST00000563842 CFAP65Q6ZU64 1925 aaKnown RBP20.44■□□□□ 0.86
CLK3-213ENST00000563842 DEPDC5O75140 1603 aa20.44■□□□□ 0.86
CLK3-213ENST00000563842 KANK1Q14678 1352 aa20.44■□□□□ 0.86
CLK3-213ENST00000563842 PRDM15P57071 1507 aaPredicted RBP20.43■□□□□ 0.86
CLK3-213ENST00000563842 MYO3AQ8NEV4 1616 aa20.43■□□□□ 0.86
CLK3-213ENST00000563842 ZNF142P52746 1687 aaPredicted RBP20.42■□□□□ 0.86
CLK3-213ENST00000563842 ROCK1Q13464 1354 aa20.42■□□□□ 0.86
CLK3-213ENST00000563842 RRBP1Q9P2E9 1410 aaKnown RBP20.41■□□□□ 0.86
CLK3-213ENST00000563842 CAMSAP1Q5T5Y3 1602 aa20.41■□□□□ 0.86
CLK3-213ENST00000563842 ANKRD50Q9ULJ7 1429 aa20.4■□□□□ 0.86
CLK3-213ENST00000563842 TNRQ92752 1358 aa20.39■□□□□ 0.85
CLK3-213ENST00000563842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.39■□□□□ 0.855e-6■□□□□ 8.4
CLK3-213ENST00000563842 DMRT2Q9Y5R5 561 aa20.39■□□□□ 0.85
CLK3-213ENST00000563842 ITGAEP38570 1179 aa20.38■□□□□ 0.85
CLK3-213ENST00000563842 STRCQ7RTU9 1775 aa20.38■□□□□ 0.85
CLK3-213ENST00000563842 CEP170BQ9Y4F5 1589 aaPredicted RBP20.38■□□□□ 0.85
CLK3-213ENST00000563842 FBXO31Q5XUX0 539 aaPredicted RBP20.37■□□□□ 0.85
CLK3-213ENST00000563842 A2ML1A8K2U0 1454 aa20.36■□□□□ 0.85
CLK3-213ENST00000563842 ARHGAP31Q2M1Z3 1444 aa20.35■□□□□ 0.85
CLK3-213ENST00000563842 NLRP1Q9C000 1473 aa20.34■□□□□ 0.85
CLK3-213ENST00000563842 SPATA31D1Q6ZQQ2 1576 aa20.34■□□□□ 0.85
CLK3-213ENST00000563842 VWDEQ8N2E2 1590 aa20.34■□□□□ 0.85
CLK3-213ENST00000563842 LMTK2Q8IWU2 1503 aa20.33■□□□□ 0.85
CLK3-213ENST00000563842 ERVK-7P63135 1459 aa20.31■□□□□ 0.84
CLK3-213ENST00000563842 PLA2R1Q13018 1463 aa20.3■□□□□ 0.84
CLK3-213ENST00000563842 CERKQ8TCT0 537 aa20.3■□□□□ 0.84
CLK3-213ENST00000563842 UNC13BO14795 1591 aa20.29■□□□□ 0.84
CLK3-213ENST00000563842 PTPRTO14522 1441 aa20.27■□□□□ 0.84
CLK3-213ENST00000563842 PKD2Q13563 968 aa20.27■□□□□ 0.84
CLK3-213ENST00000563842 THEMISQ8N1K5 641 aaPredicted RBP20.27■□□□□ 0.84
CLK3-213ENST00000563842 UGGT1Q9NYU2 1555 aa20.26■□□□□ 0.83
CLK3-213ENST00000563842 EFCAB6Q5THR3 1501 aa20.26■□□□□ 0.83
CLK3-213ENST00000563842 TET3O43151 1660 aa20.26■□□□□ 0.83
CLK3-213ENST00000563842 GCC2Q8IWJ2 1684 aa20.26■□□□□ 0.83
CLK3-213ENST00000563842 POLR1AO95602 1720 aaPredicted RBP20.24■□□□□ 0.83
CLK3-213ENST00000563842 RPRD2Q5VT52 1461 aaKnown RBP20.23■□□□□ 0.83
CLK3-213ENST00000563842 IQGAP3Q86VI3 1631 aa20.22■□□□□ 0.83
CLK3-213ENST00000563842 NCKAP5LQ9HCH0 1330 aa20.21■□□□□ 0.83
CLK3-213ENST00000563842 UBR1Q8IWV7 1749 aa20.19■□□□□ 0.82
CLK3-213ENST00000563842 ANKLE2Q86XL3 938 aa20.19■□□□□ 0.82
CLK3-213ENST00000563842 NUP155O75694 1391 aa20.19■□□□□ 0.82
CLK3-213ENST00000563842 KDM5AP29375 1690 aaKnown RBP20.18■□□□□ 0.82
CLK3-213ENST00000563842 NAIPQ13075 1403 aa20.18■□□□□ 0.82
CLK3-213ENST00000563842 NOS1P29475 1434 aa20.17■□□□□ 0.82
CLK3-213ENST00000563842 SLC52A1Q9NWF4 448 aa20.16■□□□□ 0.82
CLK3-213ENST00000563842 STAG3Q9UJ98 1225 aa20.16■□□□□ 0.82
CLK3-213ENST00000563842 HFM1A2PYH4 1435 aa20.16■□□□□ 0.82
CLK3-213ENST00000563842 E9PCH4 1651 aa20.16■□□□□ 0.82
CLK3-213ENST00000563842 PIK3C2BO00750 1634 aa20.15■□□□□ 0.82
CLK3-213ENST00000563842 SYNMO15061 1565 aa20.14■□□□□ 0.81
CLK3-213ENST00000563842 IDI1Q13907 227 aa20.12■□□□□ 0.81
CLK3-213ENST00000563842 NEURL4Q96JN8 1562 aa20.11■□□□□ 0.81
CLK3-213ENST00000563842 MED14O60244 1454 aa20.1■□□□□ 0.81
CLK3-213ENST00000563842 SLIT1O75093 1534 aa20.09■□□□□ 0.81
CLK3-213ENST00000563842 EID1Q9Y6B2 187 aa20.09■□□□□ 0.81
CLK3-213ENST00000563842 IQGAP1P46940 1657 aa20.08■□□□□ 0.81
CLK3-213ENST00000563842 NPHP4O75161 1426 aaPredicted RBP20.08■□□□□ 0.8
CLK3-213ENST00000563842 ADGRB3O60242 1522 aa20.07■□□□□ 0.8
CLK3-213ENST00000563842 ACIN1Q9UKV3 1341 aaKnown RBP20.07■□□□□ 0.8
CLK3-213ENST00000563842 ARHGAP23Q9P227 1491 aa20.07■□□□□ 0.8
CLK3-213ENST00000563842 TRIM52Q96A61 297 aa20.07■□□□□ 0.8
CLK3-213ENST00000563842 SCAF11Q99590 1463 aaKnown RBP20.06■□□□□ 0.8
CLK3-213ENST00000563842 SPHKAPQ2M3C7 1700 aa20.06■□□□□ 0.8
CLK3-213ENST00000563842 MYO5BQ9ULV0 1848 aa20.06■□□□□ 0.8
CLK3-213ENST00000563842 TXNDC2Q86VQ3 553 aa20.05■□□□□ 0.8
CLK3-213ENST00000563842 TMEM2Q9UHN6 1383 aa20.05■□□□□ 0.8
CLK3-213ENST00000563842 LTBP4Q8N2S1 1624 aa20.05■□□□□ 0.8
CLK3-213ENST00000563842 HDGFP51858 240 aaKnown RBP20.03■□□□□ 0.8
CLK3-213ENST00000563842 ZNF335Q9H4Z2 1342 aaPredicted RBP20.02■□□□□ 0.79
CLK3-213ENST00000563842 IQSEC2Q5JU85 1478 aa20.01■□□□□ 0.79
CLK3-213ENST00000563842 TMEM131LA2VDJ0 1609 aa20.01■□□□□ 0.79
CLK3-213ENST00000563842 LTKP29376 864 aa20■□□□□ 0.79
CLK3-213ENST00000563842 CHGAP10645 457 aaKnown RBP19.99■□□□□ 0.79
CLK3-213ENST00000563842 SLC4A1APQ9BWU0 796 aaKnown RBP19.99■□□□□ 0.79
CLK3-213ENST00000563842 CPS1P31327 1500 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms