RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 CCDC144AA2RUR9 1427 aa26.83■■□□□ 1.89
SMPD3-203ENST00000563226 ANP32CO43423 234 aa26.83■■□□□ 1.89
SMPD3-203ENST00000563226 POLR1AO95602 1720 aaPredicted RBP26.81■■□□□ 1.88
SMPD3-203ENST00000563226 RALGAPBQ86X10 1494 aa26.81■■□□□ 1.88
SMPD3-203ENST00000563226 CCDC7Q96M83 1385 aa26.8■■□□□ 1.88
SMPD3-203ENST00000563226 DEPDC5O75140 1603 aa26.79■■□□□ 1.88
SMPD3-203ENST00000563226 KDM5CP41229 1560 aa26.79■■□□□ 1.88
SMPD3-203ENST00000563226 KDM2AQ9Y2K7 1162 aa26.78■■□□□ 1.88
SMPD3-203ENST00000563226 DCAF11Q8TEB1 546 aa26.77■■□□□ 1.88
SMPD3-203ENST00000563226 USP47Q96K76 1375 aa26.76■■□□□ 1.87
SMPD3-203ENST00000563226 E9PCH4 1651 aa26.76■■□□□ 1.87
SMPD3-203ENST00000563226 CD109Q6YHK3 1445 aa26.76■■□□□ 1.87
SMPD3-203ENST00000563226 KIDINS220Q9ULH0 1771 aa26.75■■□□□ 1.87
SMPD3-203ENST00000563226 BCORL1Q5H9F3 1711 aa26.75■■□□□ 1.87
SMPD3-203ENST00000563226 ATP10AO60312 1499 aa26.75■■□□□ 1.87
SMPD3-203ENST00000563226 CNTLNQ9NXG0 1405 aa26.74■■□□□ 1.87
SMPD3-203ENST00000563226 CCER2I3L3R5 266 aa26.74■■□□□ 1.87
SMPD3-203ENST00000563226 KIF7Q2M1P5 1343 aa26.73■■□□□ 1.87
SMPD3-203ENST00000563226 MYT1LQ9UL68 1186 aa26.72■■□□□ 1.87
SMPD3-203ENST00000563226 CFAP74Q9C0B2 1584 aa26.72■■□□□ 1.87
SMPD3-203ENST00000563226 A2MP01023 1474 aa26.71■■□□□ 1.87
SMPD3-203ENST00000563226 RGL3Q3MIN7 710 aa26.7■■□□□ 1.86
SMPD3-203ENST00000563226 ZNF518AQ6AHZ1 1483 aa26.7■■□□□ 1.86
SMPD3-203ENST00000563226 EIF2AK4Q9P2K8 1649 aaKnown RBP26.69■■□□□ 1.86
SMPD3-203ENST00000563226 DHX29Q7Z478 1369 aaKnown RBP26.68■■□□□ 1.86
SMPD3-203ENST00000563226 VWDEQ8N2E2 1590 aa26.68■■□□□ 1.86
SMPD3-203ENST00000563226 TRPM1Q7Z4N2 1603 aa26.68■■□□□ 1.86
SMPD3-203ENST00000563226 MROH1Q8NDA8 1641 aa26.68■■□□□ 1.86
SMPD3-203ENST00000563226 PRAG1Q86YV5 1406 aa26.67■■□□□ 1.86
SMPD3-203ENST00000563226 TET3O43151 1660 aa26.67■■□□□ 1.86
SMPD3-203ENST00000563226 CARD11Q9BXL7 1154 aa26.66■■□□□ 1.86
SMPD3-203ENST00000563226 KIF3BO15066 747 aa26.65■■□□□ 1.86
SMPD3-203ENST00000563226 POGZQ7Z3K3 1410 aa26.65■■□□□ 1.86
SMPD3-203ENST00000563226 SPHKAPQ2M3C7 1700 aa26.65■■□□□ 1.86
SMPD3-203ENST00000563226 PRDM15P57071 1507 aaPredicted RBP26.64■■□□□ 1.86
SMPD3-203ENST00000563226 RIMBP3CA6NJZ7 1639 aa26.62■■□□□ 1.85
SMPD3-203ENST00000563226 RIMBP3BA6NNM3 1639 aa26.62■■□□□ 1.85
SMPD3-203ENST00000563226 RIMBP3Q9UFD9 1639 aa26.62■■□□□ 1.85
SMPD3-203ENST00000563226 TRPM2O94759 1503 aa26.62■■□□□ 1.85
SMPD3-203ENST00000563226 CYB5RLQ6IPT4 315 aa26.61■■□□□ 1.85
SMPD3-203ENST00000563226 ROCK2O75116 1388 aaKnown RBP26.6■■□□□ 1.85
SMPD3-203ENST00000563226 KANK1Q14678 1352 aa26.59■■□□□ 1.85
SMPD3-203ENST00000563226 CLTCL1P53675 1640 aa26.58■■□□□ 1.85
SMPD3-203ENST00000563226 PTPRTO14522 1441 aa26.58■■□□□ 1.85
SMPD3-203ENST00000563226 CEP152O94986 1710 aa26.58■■□□□ 1.85
SMPD3-203ENST00000563226 HECW2Q9P2P5 1572 aa26.58■■□□□ 1.85
SMPD3-203ENST00000563226 FRMPD1Q5SYB0 1578 aa26.56■■□□□ 1.84
SMPD3-203ENST00000563226 MLH3Q9UHC1 1453 aa26.56■■□□□ 1.84
SMPD3-203ENST00000563226 NEO1Q92859 1461 aa26.55■■□□□ 1.84
SMPD3-203ENST00000563226 MAP3K4Q9Y6R4 1608 aa26.55■■□□□ 1.84
SMPD3-203ENST00000563226 ST20-MTHFSA0A0A6YYL1 179 aa26.54■■□□□ 1.84
SMPD3-203ENST00000563226 NBPF1Q3BBV0 1214 aa26.54■■□□□ 1.84
SMPD3-203ENST00000563226 ABCA6Q8N139 1617 aa26.54■■□□□ 1.84
SMPD3-203ENST00000563226 RNF17Q9BXT8 1623 aaKnown RBP26.53■■□□□ 1.84
SMPD3-203ENST00000563226 POLR3GLQ9BT43 218 aa26.52■■□□□ 1.84
SMPD3-203ENST00000563226 PPRC1Q5VV67 1664 aaKnown RBP26.51■■□□□ 1.83
SMPD3-203ENST00000563226 EFCAB6Q5THR3 1501 aa26.51■■□□□ 1.83
SMPD3-203ENST00000563226 GPRASP1Q5JY77 1395 aa26.51■■□□□ 1.83
SMPD3-203ENST00000563226 LAMC1P11047 1609 aa26.5■■□□□ 1.83
SMPD3-203ENST00000563226 PRKRIP1Q9H875 184 aaPredicted RBP26.5■■□□□ 1.83
SMPD3-203ENST00000563226 RAPGEF3O95398 923 aa26.48■■□□□ 1.83
SMPD3-203ENST00000563226 ARID4BQ4LE39 1312 aaPredicted RBP26.48■■□□□ 1.83
SMPD3-203ENST00000563226 MADDQ8WXG6 1647 aa26.47■■□□□ 1.83
SMPD3-203ENST00000563226 UGGT1Q9NYU2 1555 aa26.47■■□□□ 1.83
SMPD3-203ENST00000563226 RICTORQ6R327 1708 aa26.46■■□□□ 1.83
SMPD3-203ENST00000563226 LMTK2Q8IWU2 1503 aa26.46■■□□□ 1.83
SMPD3-203ENST00000563226 GLI2P10070 1586 aa26.45■■□□□ 1.83
SMPD3-203ENST00000563226 CCDC184Q52MB2 194 aa26.45■■□□□ 1.83
SMPD3-203ENST00000563226 DIP2CQ9Y2E4 1556 aa26.41■■□□□ 1.82
SMPD3-203ENST00000563226 DIP2BQ9P265 1576 aa26.39■■□□□ 1.81
SMPD3-203ENST00000563226 GGT6Q6P531 493 aa26.37■■□□□ 1.81
SMPD3-203ENST00000563226 KIF1BO60333 1816 aa26.37■■□□□ 1.81
SMPD3-203ENST00000563226 NEURL4Q96JN8 1562 aa26.37■■□□□ 1.81
SMPD3-203ENST00000563226 MROH2AA6NES4 1674 aa26.36■■□□□ 1.81
SMPD3-203ENST00000563226 CFAP65Q6ZU64 1925 aaKnown RBP26.36■■□□□ 1.81
SMPD3-203ENST00000563226 NPATQ14207 1427 aa26.33■■□□□ 1.81
SMPD3-203ENST00000563226 ABCC3O15438 1527 aa26.33■■□□□ 1.81
SMPD3-203ENST00000563226 TSPOAP1O95153 1857 aa26.32■■□□□ 1.8
SMPD3-203ENST00000563226 IQGAP1P46940 1657 aa26.32■■□□□ 1.8
SMPD3-203ENST00000563226 FAM69CQ0P6D2 419 aa26.32■■□□□ 1.8
SMPD3-203ENST00000563226 YEATS2Q9ULM3 1422 aa26.32■■□□□ 1.8
SMPD3-203ENST00000563226 COL17A1Q9UMD9 1497 aaPredicted RBP26.32■■□□□ 1.8
SMPD3-203ENST00000563226 CNGB1Q14028 1251 aaPredicted RBP26.32■■□□□ 1.8
SMPD3-203ENST00000563226 TESK2Q96S53 571 aa26.32■■□□□ 1.8
SMPD3-203ENST00000563226 IFT172Q9UG01 1749 aa26.31■■□□□ 1.8
SMPD3-203ENST00000563226 MRS2Q9HD23 443 aa26.3■■□□□ 1.8
SMPD3-203ENST00000563226 DISP3Q9P2K9 1392 aa26.29■■□□□ 1.8
SMPD3-203ENST00000563226 CAMSAP1Q5T5Y3 1602 aa26.29■■□□□ 1.8
SMPD3-203ENST00000563226 HNRNPUQ00839 825 aaKnown RBP eCLIP26.27■■□□□ 1.8
SMPD3-203ENST00000563226 SIGLEC1Q9BZZ2 1709 aa26.26■■□□□ 1.8
SMPD3-203ENST00000563226 WASHC2CQ9Y4E1 1318 aa26.26■■□□□ 1.8
SMPD3-203ENST00000563226 STAC3Q96MF2 364 aa26.26■■□□□ 1.79
SMPD3-203ENST00000563226 ADGRB3O60242 1522 aa26.26■■□□□ 1.79
SMPD3-203ENST00000563226 KIAA1210Q9ULL0 1709 aa26.26■■□□□ 1.79
SMPD3-203ENST00000563226 MYOM2P54296 1465 aa26.25■■□□□ 1.79
SMPD3-203ENST00000563226 ZMYM4Q5VZL5 1548 aa26.23■■□□□ 1.79
SMPD3-203ENST00000563226 FAM9BQ8IZU0 186 aa26.23■■□□□ 1.79
SMPD3-203ENST00000563226 ADGRF5Q8IZF2 1346 aa26.21■■□□□ 1.79
SMPD3-203ENST00000563226 SCAF11Q99590 1463 aaKnown RBP26.21■■□□□ 1.79
SMPD3-203ENST00000563226 SUPT16HQ9Y5B9 1047 aaKnown RBP26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms