RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PRDM15P57071 1507 aaPredicted RBP24.76■■□□□ 1.55
VPS4A-202ENST00000562754 KIF3BO15066 747 aa24.76■■□□□ 1.55
VPS4A-202ENST00000562754 KDM5DQ9BY66 1539 aa24.74■■□□□ 1.55
VPS4A-202ENST00000562754 HRCP23327 699 aa24.73■■□□□ 1.55
VPS4A-202ENST00000562754 VWDEQ8N2E2 1590 aa24.72■■□□□ 1.55
VPS4A-202ENST00000562754 IQGAP3Q86VI3 1631 aa24.71■■□□□ 1.55
VPS4A-202ENST00000562754 PZPP20742 1482 aa24.69■■□□□ 1.54
VPS4A-202ENST00000562754 CEP152O94986 1710 aa24.67■■□□□ 1.54
VPS4A-202ENST00000562754 NUP155O75694 1391 aa24.67■■□□□ 1.54
VPS4A-202ENST00000562754 FAM135AQ9P2D6 1515 aa24.66■■□□□ 1.54
VPS4A-202ENST00000562754 ARID4BQ4LE39 1312 aaPredicted RBP24.66■■□□□ 1.54
VPS4A-202ENST00000562754 TRIM52Q96A61 297 aa24.66■■□□□ 1.54
VPS4A-202ENST00000562754 GGT6Q6P531 493 aa24.65■■□□□ 1.54
VPS4A-202ENST00000562754 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.65■■□□□ 1.54
VPS4A-202ENST00000562754 ABCC3O15438 1527 aa24.65■■□□□ 1.54
VPS4A-202ENST00000562754 ZC3H13Q5T200 1668 aaKnown RBP24.64■■□□□ 1.53
VPS4A-202ENST00000562754 ACIN1Q9UKV3 1341 aaKnown RBP24.62■■□□□ 1.53
VPS4A-202ENST00000562754 MLECQ14165 292 aa24.62■■□□□ 1.53
VPS4A-202ENST00000562754 TET3O43151 1660 aa24.62■■□□□ 1.53
VPS4A-202ENST00000562754 LMTK2Q8IWU2 1503 aa24.61■■□□□ 1.53
VPS4A-202ENST00000562754 KANK1Q14678 1352 aa24.61■■□□□ 1.53
VPS4A-202ENST00000562754 CLTCQ00610 1675 aaKnown RBP24.59■■□□□ 1.53
VPS4A-202ENST00000562754 CAMSAP1Q5T5Y3 1602 aa24.59■■□□□ 1.53
VPS4A-202ENST00000562754 DHX57Q6P158 1386 aaKnown RBP24.58■■□□□ 1.53
VPS4A-202ENST00000562754 FER1L4A9Z1Z3 1794 aa24.58■■□□□ 1.53
VPS4A-202ENST00000562754 EFCAB6Q5THR3 1501 aa24.57■■□□□ 1.52
VPS4A-202ENST00000562754 ADAMTSL3P82987 1691 aa24.57■■□□□ 1.52
VPS4A-202ENST00000562754 E9PCH4 1651 aa24.56■■□□□ 1.52
VPS4A-202ENST00000562754 MADDQ8WXG6 1647 aa24.55■■□□□ 1.52
VPS4A-202ENST00000562754 MPHOSPH9Q99550 1183 aa24.54■■□□□ 1.52
VPS4A-202ENST00000562754 PPP6R1Q9UPN7 881 aa24.54■■□□□ 1.52
VPS4A-202ENST00000562754 SLC4A1APQ9BWU0 796 aaKnown RBP24.53■■□□□ 1.52
VPS4A-202ENST00000562754 WASHC2CQ9Y4E1 1318 aa24.53■■□□□ 1.52
VPS4A-202ENST00000562754 MROH2AA6NES4 1674 aa24.52■■□□□ 1.52
VPS4A-202ENST00000562754 RIMS1Q86UR5 1692 aaKnown RBP24.5■■□□□ 1.51
VPS4A-202ENST00000562754 CNTLNQ9NXG0 1405 aa24.49■■□□□ 1.51
VPS4A-202ENST00000562754 PKD2Q13563 968 aa24.48■■□□□ 1.51
VPS4A-202ENST00000562754 NPATQ14207 1427 aa24.48■■□□□ 1.51
VPS4A-202ENST00000562754 ARHGAP31Q2M1Z3 1444 aa24.46■■□□□ 1.51
VPS4A-202ENST00000562754 FOXD1Q16676 465 aa24.45■■□□□ 1.5
VPS4A-202ENST00000562754 RPRD2Q5VT52 1461 aaKnown RBP24.45■■□□□ 1.5
VPS4A-202ENST00000562754 C3P01024 1663 aa24.43■■□□□ 1.5
VPS4A-202ENST00000562754 SPHKAPQ2M3C7 1700 aa24.43■■□□□ 1.5
VPS4A-202ENST00000562754 CFAP65Q6ZU64 1925 aaKnown RBP24.42■■□□□ 1.5
VPS4A-202ENST00000562754 ESF1Q9H501 851 aaKnown RBP24.42■■□□□ 1.5
VPS4A-202ENST00000562754 PREX1Q8TCU6 1659 aa24.42■■□□□ 1.5
VPS4A-202ENST00000562754 ZMYM3Q14202 1370 aa24.41■■□□□ 1.5
VPS4A-202ENST00000562754 PLA2R1Q13018 1463 aa24.4■■□□□ 1.5
VPS4A-202ENST00000562754 ERVK-7P63135 1459 aa24.38■■□□□ 1.49
VPS4A-202ENST00000562754 PTPRTO14522 1441 aa24.38■■□□□ 1.49
VPS4A-202ENST00000562754 ANKRD30BQ9BXX2 1392 aa24.38■■□□□ 1.49
VPS4A-202ENST00000562754 TRPM2O94759 1503 aa24.37■■□□□ 1.49
VPS4A-202ENST00000562754 SYNMO15061 1565 aa24.37■■□□□ 1.49
VPS4A-202ENST00000562754 SPATA31D1Q6ZQQ2 1576 aa24.37■■□□□ 1.49
VPS4A-202ENST00000562754 NOS1P29475 1434 aa24.36■■□□□ 1.49
VPS4A-202ENST00000562754 CCER1Q8TC90 406 aaPredicted RBP24.36■■□□□ 1.49
VPS4A-202ENST00000562754 FBXO31Q5XUX0 539 aaPredicted RBP24.33■■□□□ 1.49
VPS4A-202ENST00000562754 UGGT1Q9NYU2 1555 aa24.33■■□□□ 1.48
VPS4A-202ENST00000562754 PTPRMP28827 1452 aa24.32■■□□□ 1.48
VPS4A-202ENST00000562754 CLTCL1P53675 1640 aa24.32■■□□□ 1.48
VPS4A-202ENST00000562754 KDM4FA0A1W2PPD8 638 aa24.31■■□□□ 1.48
VPS4A-202ENST00000562754 CEBPAP49715 358 aaPredicted RBP24.31■■□□□ 1.48
VPS4A-202ENST00000562754 PIK3C2BO00750 1634 aa24.3■■□□□ 1.48
VPS4A-202ENST00000562754 CLSPNQ9HAW4 1339 aa24.29■■□□□ 1.48
VPS4A-202ENST00000562754 PLPPR3Q6T4P5 718 aa24.25■■□□□ 1.47
VPS4A-202ENST00000562754 TNRQ92752 1358 aa24.25■■□□□ 1.47
VPS4A-202ENST00000562754 CCDC144AA2RUR9 1427 aa24.25■■□□□ 1.47
VPS4A-202ENST00000562754 SIN3AQ96ST3 1273 aa24.23■■□□□ 1.47
VPS4A-202ENST00000562754 MYO3AQ8NEV4 1616 aa24.22■■□□□ 1.47
VPS4A-202ENST00000562754 KIF1BO60333 1816 aa24.19■■□□□ 1.46
VPS4A-202ENST00000562754 ADGRB3O60242 1522 aa24.18■■□□□ 1.46
VPS4A-202ENST00000562754 NLRP1Q9C000 1473 aa24.16■■□□□ 1.46
VPS4A-202ENST00000562754 MYO5BQ9ULV0 1848 aa24.16■■□□□ 1.46
VPS4A-202ENST00000562754 TMEM131LA2VDJ0 1609 aa24.15■■□□□ 1.46
VPS4A-202ENST00000562754 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
VPS4A-202ENST00000562754 IDI1Q13907 227 aa24.15■■□□□ 1.46
VPS4A-202ENST00000562754 SLC52A1Q9NWF4 448 aa24.15■■□□□ 1.46
VPS4A-202ENST00000562754 SPATA31E1Q6ZUB1 1445 aa24.15■■□□□ 1.46
VPS4A-202ENST00000562754 ZNF142P52746 1687 aaPredicted RBP24.15■■□□□ 1.46
VPS4A-202ENST00000562754 NEURL4Q96JN8 1562 aa24.14■■□□□ 1.45
VPS4A-202ENST00000562754 SETD1BQ9UPS6 1966 aaKnown RBP24.14■■□□□ 1.45
VPS4A-202ENST00000562754 UBR1Q8IWV7 1749 aa24.13■■□□□ 1.45
VPS4A-202ENST00000562754 KDM5AP29375 1690 aaKnown RBP24.12■■□□□ 1.45
VPS4A-202ENST00000562754 CEP170BQ9Y4F5 1589 aaPredicted RBP24.12■■□□□ 1.45
VPS4A-202ENST00000562754 A2ML1A8K2U0 1454 aa24.1■■□□□ 1.45
VPS4A-202ENST00000562754 IFT172Q9UG01 1749 aa24.07■■□□□ 1.44
VPS4A-202ENST00000562754 CHGAP10645 457 aaKnown RBP24.05■■□□□ 1.44
VPS4A-202ENST00000562754 UHRF1BP1Q6BDS2 1440 aa24.04■■□□□ 1.44
VPS4A-202ENST00000562754 TONSLQ96HA7 1378 aa24.03■■□□□ 1.44
VPS4A-202ENST00000562754 NEXMIFQ5QGS0 1516 aa24.03■■□□□ 1.44
VPS4A-202ENST00000562754 PPLO60437 1756 aa24.03■■□□□ 1.44
VPS4A-202ENST00000562754 RGL3Q3MIN7 710 aa24.02■■□□□ 1.44
VPS4A-202ENST00000562754 L3MBTL2Q969R5 705 aa24■■□□□ 1.43
VPS4A-202ENST00000562754 STAG3Q9UJ98 1225 aa23.99■■□□□ 1.43
VPS4A-202ENST00000562754 ZFYVE9O95405 1425 aa23.97■■□□□ 1.43
VPS4A-202ENST00000562754 SLIT1O75093 1534 aa23.96■■□□□ 1.43
VPS4A-202ENST00000562754 LMTK3Q96Q04 1460 aa23.96■■□□□ 1.43
VPS4A-202ENST00000562754 ARHGAP23Q9P227 1491 aa23.96■■□□□ 1.43
VPS4A-202ENST00000562754 ZNF326Q5BKZ1 582 aaKnown RBP23.96■■□□□ 1.43
VPS4A-202ENST00000562754 MYOM2P54296 1465 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms