RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.6
GTF3C1-203ENST00000562609 CLASP1Q7Z460 1538 aa18.81■□□□□ 0.6
GTF3C1-203ENST00000562609 SYCP2Q9BX26 1530 aa18.8■□□□□ 0.6
GTF3C1-203ENST00000562609 FAM9BQ8IZU0 186 aa18.8■□□□□ 0.6
GTF3C1-203ENST00000562609 KIAA1107Q9UPP5 1409 aa18.8■□□□□ 0.6
GTF3C1-203ENST00000562609 TEX14Q8IWB6 1497 aa18.8■□□□□ 0.6
GTF3C1-203ENST00000562609 PREX2Q70Z35 1606 aa18.79■□□□□ 0.6
GTF3C1-203ENST00000562609 CCDC141Q6ZP82 1450 aa18.78■□□□□ 0.6
GTF3C1-203ENST00000562609 ZBED9Q6R2W3 1325 aa18.77■□□□□ 0.6
GTF3C1-203ENST00000562609 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.6
GTF3C1-203ENST00000562609 PPM1GO15355 546 aaPredicted RBP18.76■□□□□ 0.59
GTF3C1-203ENST00000562609 KDM2AQ9Y2K7 1162 aa18.76■□□□□ 0.59
GTF3C1-203ENST00000562609 GSE1Q14687 1217 aa18.75■□□□□ 0.59
GTF3C1-203ENST00000562609 RSPH6AQ9H0K4 717 aa18.75■□□□□ 0.59
GTF3C1-203ENST00000562609 ZCCHC11Q5TAX3 1644 aaKnown RBP18.75■□□□□ 0.59
GTF3C1-203ENST00000562609 ARHGEF5Q12774 1597 aa18.73■□□□□ 0.59
GTF3C1-203ENST00000562609 ARHGEF12Q9NZN5 1544 aa18.72■□□□□ 0.59
GTF3C1-203ENST00000562609 RSPH4AQ5TD94 716 aa18.71■□□□□ 0.59
GTF3C1-203ENST00000562609 CNGB1Q14028 1251 aaPredicted RBP18.7■□□□□ 0.58
GTF3C1-203ENST00000562609 POLR3GLQ9BT43 218 aa18.7■□□□□ 0.58
GTF3C1-203ENST00000562609 MYO5CQ9NQX4 1742 aa18.7■□□□□ 0.58
GTF3C1-203ENST00000562609 EFCAB2Q5VUJ9 269 aa18.69■□□□□ 0.58
GTF3C1-203ENST00000562609 AFAP1Q8N556 730 aa18.69■□□□□ 0.58
GTF3C1-203ENST00000562609 MRS2Q9HD23 443 aa18.69■□□□□ 0.58
GTF3C1-203ENST00000562609 RGL3Q3MIN7 710 aa18.68■□□□□ 0.58
GTF3C1-203ENST00000562609 DCAF11Q8TEB1 546 aa18.67■□□□□ 0.58
GTF3C1-203ENST00000562609 PLCH2O75038 1416 aa18.67■□□□□ 0.58
GTF3C1-203ENST00000562609 PLEKHH2Q8IVE3 1493 aa18.66■□□□□ 0.58
GTF3C1-203ENST00000562609 FRAT1Q92837 279 aaPredicted RBP18.65■□□□□ 0.58
GTF3C1-203ENST00000562609 TRAPPC8Q9Y2L5 1435 aa18.65■□□□□ 0.58
GTF3C1-203ENST00000562609 UHRF1BP1LA0JNW5 1464 aa18.64■□□□□ 0.58
GTF3C1-203ENST00000562609 FAM135AQ9P2D6 1515 aa18.64■□□□□ 0.57
GTF3C1-203ENST00000562609 GLIPR1L2Q4G1C9 344 aa18.64■□□□□ 0.57
GTF3C1-203ENST00000562609 CCDC7Q96M83 1385 aa18.63■□□□□ 0.57
GTF3C1-203ENST00000562609 KIF7Q2M1P5 1343 aa18.63■□□□□ 0.57
GTF3C1-203ENST00000562609 PRKRIP1Q9H875 184 aaPredicted RBP18.62■□□□□ 0.57
GTF3C1-203ENST00000562609 PDE4AP27815 886 aa18.61■□□□□ 0.57
GTF3C1-203ENST00000562609 OSCARQ8IYS5 282 aa18.61■□□□□ 0.57
GTF3C1-203ENST00000562609 FAM43AQ8N2R8 423 aa18.61■□□□□ 0.57
GTF3C1-203ENST00000562609 SPATA31E1Q6ZUB1 1445 aa18.61■□□□□ 0.57
GTF3C1-203ENST00000562609 ZMYND15Q9H091 742 aa18.6■□□□□ 0.57
GTF3C1-203ENST00000562609 SMG6Q86US8 1419 aaKnown RBP18.6■□□□□ 0.57
GTF3C1-203ENST00000562609 NFKBIBQ15653 356 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 USP47Q96K76 1375 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 RNF123Q5XPI4 1314 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 KDM5DQ9BY66 1539 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 CARD11Q9BXL7 1154 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 VSIG10Q8N0Z9 540 aa18.59■□□□□ 0.57
GTF3C1-203ENST00000562609 SPAG9O60271 1321 aaKnown RBP18.58■□□□□ 0.56
GTF3C1-203ENST00000562609 NUDCQ9Y266 331 aa18.58■□□□□ 0.56
GTF3C1-203ENST00000562609 TCERG1O14776 1098 aaKnown RBP18.57■□□□□ 0.56
GTF3C1-203ENST00000562609 CNTLNQ9NXG0 1405 aa18.56■□□□□ 0.56
GTF3C1-203ENST00000562609 WDR7Q9Y4E6 1490 aa18.56■□□□□ 0.56
GTF3C1-203ENST00000562609 BACH2Q9BYV9 841 aa18.55■□□□□ 0.56
GTF3C1-203ENST00000562609 CCDC144AA2RUR9 1427 aa18.55■□□□□ 0.56
GTF3C1-203ENST00000562609 ABCC1P33527 1531 aa18.55■□□□□ 0.56
GTF3C1-203ENST00000562609 MAST1Q9Y2H9 1570 aa18.55■□□□□ 0.56
GTF3C1-203ENST00000562609 PLA2R1Q13018 1463 aa18.54■□□□□ 0.56
GTF3C1-203ENST00000562609 ST20-MTHFSA0A0A6YYL1 179 aa18.53■□□□□ 0.56
GTF3C1-203ENST00000562609 ASXL2Q76L83 1435 aa18.52■□□□□ 0.56
GTF3C1-203ENST00000562609 FANCAO15360 1455 aa18.52■□□□□ 0.55
GTF3C1-203ENST00000562609 DUOX2Q9NRD8 1548 aa18.51■□□□□ 0.55
GTF3C1-203ENST00000562609 PLXNC1O60486 1568 aa18.51■□□□□ 0.55
GTF3C1-203ENST00000562609 NBPF1Q3BBV0 1214 aa18.51■□□□□ 0.55
GTF3C1-203ENST00000562609 NPM1P06748 294 aaKnown RBP eCLIP18.5■□□□□ 0.55
GTF3C1-203ENST00000562609 BCORL1Q5H9F3 1711 aa18.5■□□□□ 0.55
GTF3C1-203ENST00000562609 DDRGK1Q96HY6 314 aa18.5■□□□□ 0.55
GTF3C1-203ENST00000562609 UNC13BO14795 1591 aa18.49■□□□□ 0.55
GTF3C1-203ENST00000562609 SCAPERQ9BY12 1400 aa18.49■□□□□ 0.55
GTF3C1-203ENST00000562609 ROCK2O75116 1388 aaKnown RBP18.48■□□□□ 0.55
GTF3C1-203ENST00000562609 UHRF1BP1Q6BDS2 1440 aa18.47■□□□□ 0.55
GTF3C1-203ENST00000562609 SENP3-EIF4A1A0A087X0R7 540 aa18.47■□□□□ 0.55
GTF3C1-203ENST00000562609 KIF3BO15066 747 aa18.47■□□□□ 0.55
GTF3C1-203ENST00000562609 SLC4A3P48751 1232 aa18.47■□□□□ 0.55
GTF3C1-203ENST00000562609 KDM5CP41229 1560 aa18.47■□□□□ 0.55
GTF3C1-203ENST00000562609 PLEKHG5O94827 1062 aa18.46■□□□□ 0.55
GTF3C1-203ENST00000562609 ERBINQ96RT1 1412 aa18.46■□□□□ 0.55
GTF3C1-203ENST00000562609 MS4A1P11836 297 aa18.46■□□□□ 0.55
GTF3C1-203ENST00000562609 RALGAPBQ86X10 1494 aa18.46■□□□□ 0.55
GTF3C1-203ENST00000562609 PODXL2Q9NZ53 605 aa18.45■□□□□ 0.54
GTF3C1-203ENST00000562609 ADGRL1O94910 1474 aa18.45■□□□□ 0.54
GTF3C1-203ENST00000562609 IQGAP3Q86VI3 1631 aa18.44■□□□□ 0.54
GTF3C1-203ENST00000562609 ZFYVE16Q7Z3T8 1539 aa18.43■□□□□ 0.54
GTF3C1-203ENST00000562609 EXOC6Q8TAG9 804 aa18.43■□□□□ 0.54
GTF3C1-203ENST00000562609 A2MP01023 1474 aa18.42■□□□□ 0.54
GTF3C1-203ENST00000562609 DAXXQ9UER7 740 aaPredicted RBP18.42■□□□□ 0.54
GTF3C1-203ENST00000562609 ABCA9Q8IUA7 1624 aa18.41■□□□□ 0.54
GTF3C1-203ENST00000562609 PRAG1Q86YV5 1406 aa18.41■□□□□ 0.54
GTF3C1-203ENST00000562609 RRAGDQ9NQL2 400 aaPredicted RBP18.4■□□□□ 0.54
GTF3C1-203ENST00000562609 FRAT2O75474 233 aaPredicted RBP18.39■□□□□ 0.53
GTF3C1-203ENST00000562609 POLR1AO95602 1720 aaPredicted RBP18.39■□□□□ 0.53
GTF3C1-203ENST00000562609 MAGI2Q86UL8 1455 aa18.39■□□□□ 0.53
GTF3C1-203ENST00000562609 ATP7AQ04656 1500 aa18.38■□□□□ 0.53
GTF3C1-203ENST00000562609 RTEL1-TNFRSF6BF6WH68 1400 aa18.38■□□□□ 0.53
GTF3C1-203ENST00000562609 ARAP3Q8WWN8 1544 aa18.37■□□□□ 0.53
GTF3C1-203ENST00000562609 DHX29Q7Z478 1369 aaKnown RBP18.37■□□□□ 0.53
GTF3C1-203ENST00000562609 HSP90AA2PQ14568 343 aaPredicted RBP18.37■□□□□ 0.53
GTF3C1-203ENST00000562609 RRP1P56182 461 aaKnown RBP18.35■□□□□ 0.53
GTF3C1-203ENST00000562609 CYB5RLQ6IPT4 315 aa18.35■□□□□ 0.53
GTF3C1-203ENST00000562609 E9PCH4 1651 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms