RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 KCNH8Q96L42 1107 aa11.27□□□□□ -0.61
SMAD3-212ENST00000559937 EIF2AK4Q9P2K8 1649 aaKnown RBP11.27□□□□□ -0.61
SMAD3-212ENST00000559937 RTEL1-TNFRSF6BF6WH68 1400 aa11.26□□□□□ -0.61
SMAD3-212ENST00000559937 DEPDC5O75140 1603 aa11.26□□□□□ -0.61
SMAD3-212ENST00000559937 INO80Q9ULG1 1556 aaPredicted RBP11.25□□□□□ -0.61
SMAD3-212ENST00000559937 EFCAB2Q5VUJ9 269 aa11.25□□□□□ -0.61
SMAD3-212ENST00000559937 WDR7Q9Y4E6 1490 aa11.25□□□□□ -0.61
SMAD3-212ENST00000559937 NPM1P06748 294 aaKnown RBP eCLIP11.24□□□□□ -0.61
SMAD3-212ENST00000559937 USP47Q96K76 1375 aa11.24□□□□□ -0.61
SMAD3-212ENST00000559937 ZFYVE16Q7Z3T8 1539 aa11.24□□□□□ -0.61
SMAD3-212ENST00000559937 E9PCH4 1651 aa11.24□□□□□ -0.61
SMAD3-212ENST00000559937 ROCK2O75116 1388 aaKnown RBP11.23□□□□□ -0.61
SMAD3-212ENST00000559937 CCDC144AA2RUR9 1427 aa11.22□□□□□ -0.61
SMAD3-212ENST00000559937 TET3O43151 1660 aa11.22□□□□□ -0.61
SMAD3-212ENST00000559937 CEP152O94986 1710 aa11.22□□□□□ -0.61
SMAD3-212ENST00000559937 KIF7Q2M1P5 1343 aa11.22□□□□□ -0.61
SMAD3-212ENST00000559937 CFAP74Q9C0B2 1584 aa11.22□□□□□ -0.61
SMAD3-212ENST00000559937 SPHKAPQ2M3C7 1700 aa11.21□□□□□ -0.61
SMAD3-212ENST00000559937 RNF17Q9BXT8 1623 aaKnown RBP11.2□□□□□ -0.62
SMAD3-212ENST00000559937 PLA2R1Q13018 1463 aa11.2□□□□□ -0.62
SMAD3-212ENST00000559937 C11orf95C9JLR9 678 aaPredicted RBP11.2□□□□□ -0.62
SMAD3-212ENST00000559937 SUPT16HQ9Y5B9 1047 aaKnown RBP11.2□□□□□ -0.62
SMAD3-212ENST00000559937 VWDEQ8N2E2 1590 aa11.2□□□□□ -0.62
SMAD3-212ENST00000559937 NEURL4Q96JN8 1562 aa11.2□□□□□ -0.62
SMAD3-212ENST00000559937 ATP7AQ04656 1500 aa11.19□□□□□ -0.62
SMAD3-212ENST00000559937 PRAG1Q86YV5 1406 aa11.19□□□□□ -0.62
SMAD3-212ENST00000559937 FAM69CQ0P6D2 419 aa11.19□□□□□ -0.62
SMAD3-212ENST00000559937 TRAPPC8Q9Y2L5 1435 aa11.18□□□□□ -0.62
SMAD3-212ENST00000559937 GPRASP1Q5JY77 1395 aa11.18□□□□□ -0.62
SMAD3-212ENST00000559937 PRKRIP1Q9H875 184 aaPredicted RBP11.18□□□□□ -0.62
SMAD3-212ENST00000559937 TRPM2O94759 1503 aa11.18□□□□□ -0.62
SMAD3-212ENST00000559937 PRDM15P57071 1507 aaPredicted RBP11.18□□□□□ -0.62
SMAD3-212ENST00000559937 A2MP01023 1474 aa11.18□□□□□ -0.62
SMAD3-212ENST00000559937 FANCAO15360 1455 aa11.17□□□□□ -0.62
SMAD3-212ENST00000559937 DHX29Q7Z478 1369 aaKnown RBP11.16□□□□□ -0.62
SMAD3-212ENST00000559937 KIAA1210Q9ULL0 1709 aa11.15□□□□□ -0.62
SMAD3-212ENST00000559937 SPAG9O60271 1321 aaKnown RBP11.15□□□□□ -0.62
SMAD3-212ENST00000559937 KIF13AQ9H1H9 1805 aa11.15□□□□□ -0.62
SMAD3-212ENST00000559937 KTN1Q86UP2 1357 aaKnown RBP11.15□□□□□ -0.63
SMAD3-212ENST00000559937 MADDQ8WXG6 1647 aa11.14□□□□□ -0.63
SMAD3-212ENST00000559937 KIDINS220Q9ULH0 1771 aa11.14□□□□□ -0.63
SMAD3-212ENST00000559937 CARD11Q9BXL7 1154 aa11.14□□□□□ -0.63
SMAD3-212ENST00000559937 IQGAP1P46940 1657 aa11.14□□□□□ -0.63
SMAD3-212ENST00000559937 MROH1Q8NDA8 1641 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 ADGRL1O94910 1474 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 PTPRTO14522 1441 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 ASXL2Q76L83 1435 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 DCAF11Q8TEB1 546 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 STAC3Q96MF2 364 aa11.13□□□□□ -0.63
SMAD3-212ENST00000559937 KIF1BO60333 1816 aa11.12□□□□□ -0.63
SMAD3-212ENST00000559937 NEFLP07196 543 aa11.12□□□□□ -0.63
SMAD3-212ENST00000559937 ZNF326Q5BKZ1 582 aaKnown RBP11.12□□□□□ -0.63
SMAD3-212ENST00000559937 CLTCL1P53675 1640 aa11.12□□□□□ -0.63
SMAD3-212ENST00000559937 IFT172Q9UG01 1749 aa11.11□□□□□ -0.63
SMAD3-212ENST00000559937 KANK1Q14678 1352 aa11.11□□□□□ -0.63
SMAD3-212ENST00000559937 COL17A1Q9UMD9 1497 aaPredicted RBP11.11□□□□□ -0.63
SMAD3-212ENST00000559937 DIP2BQ9P265 1576 aa11.11□□□□□ -0.63
SMAD3-212ENST00000559937 LMTK2Q8IWU2 1503 aa11.1□□□□□ -0.63
SMAD3-212ENST00000559937 HNRNPUQ00839 825 aaKnown RBP eCLIP11.1□□□□□ -0.632e-6■□□□□ 10.6
SMAD3-212ENST00000559937 ZNF518AQ6AHZ1 1483 aa11.1□□□□□ -0.63
SMAD3-212ENST00000559937 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.09□□□□□ -0.634e-8■■□□□ 12.6
SMAD3-212ENST00000559937 KDM2AQ9Y2K7 1162 aa11.09□□□□□ -0.63
SMAD3-212ENST00000559937 EFCAB6Q5THR3 1501 aa11.09□□□□□ -0.63
SMAD3-212ENST00000559937 SCAPERQ9BY12 1400 aa11.09□□□□□ -0.63
SMAD3-212ENST00000559937 ZBED9Q6R2W3 1325 aa11.09□□□□□ -0.63
SMAD3-212ENST00000559937 MRS2Q9HD23 443 aa11.08□□□□□ -0.64
SMAD3-212ENST00000559937 HECW2Q9P2P5 1572 aa11.07□□□□□ -0.64
SMAD3-212ENST00000559937 ST20-MTHFSA0A0A6YYL1 179 aa11.07□□□□□ -0.64
SMAD3-212ENST00000559937 ERICH6BQ5W0A0 696 aa11.06□□□□□ -0.64
SMAD3-212ENST00000559937 MLH3Q9UHC1 1453 aa11.06□□□□□ -0.64
SMAD3-212ENST00000559937 PPRC1Q5VV67 1664 aaKnown RBP11.05□□□□□ -0.64
SMAD3-212ENST00000559937 FKBP8Q14318 412 aa11.05□□□□□ -0.64
SMAD3-212ENST00000559937 CCDC184Q52MB2 194 aa11.05□□□□□ -0.64
SMAD3-212ENST00000559937 AEBP2Q6ZN18 517 aaPredicted RBP11.05□□□□□ -0.64
SMAD3-212ENST00000559937 AFAP1Q8N556 730 aa11.05□□□□□ -0.64
SMAD3-212ENST00000559937 MAP3K4Q9Y6R4 1608 aa11.05□□□□□ -0.64
SMAD3-212ENST00000559937 MYOM2P54296 1465 aa11.05□□□□□ -0.64
SMAD3-212ENST00000559937 ZMYM4Q5VZL5 1548 aa11.04□□□□□ -0.64
SMAD3-212ENST00000559937 BRD4O60885 1362 aaPredicted RBP11.04□□□□□ -0.64
SMAD3-212ENST00000559937 POGZQ7Z3K3 1410 aa11.04□□□□□ -0.64
SMAD3-212ENST00000559937 RALBP1Q15311 655 aa11.04□□□□□ -0.64
SMAD3-212ENST00000559937 NEO1Q92859 1461 aa11.04□□□□□ -0.64
SMAD3-212ENST00000559937 WASHC2CQ9Y4E1 1318 aa11.04□□□□□ -0.64
SMAD3-212ENST00000559937 GLI2P10070 1586 aa11.03□□□□□ -0.64
SMAD3-212ENST00000559937 MYO3AQ8NEV4 1616 aa11.02□□□□□ -0.64
SMAD3-212ENST00000559937 MROH2AA6NES4 1674 aa11.02□□□□□ -0.64
SMAD3-212ENST00000559937 RGL3Q3MIN7 710 aa11.02□□□□□ -0.65
SMAD3-212ENST00000559937 MYBBP1AQ9BQG0 1328 aaKnown RBP11.02□□□□□ -0.65
SMAD3-212ENST00000559937 SYNMO15061 1565 aa11.02□□□□□ -0.65
SMAD3-212ENST00000559937 INSRP06213 1382 aa11.02□□□□□ -0.65
SMAD3-212ENST00000559937 ABCA6Q8N139 1617 aa11.02□□□□□ -0.65
SMAD3-212ENST00000559937 ZC3H13Q5T200 1668 aaKnown RBP11.01□□□□□ -0.65
SMAD3-212ENST00000559937 CD109Q6YHK3 1445 aa11.01□□□□□ -0.65
SMAD3-212ENST00000559937 SCAF11Q99590 1463 aaKnown RBP11.01□□□□□ -0.65
SMAD3-212ENST00000559937 PPLO60437 1756 aa11.01□□□□□ -0.65
SMAD3-212ENST00000559937 FAM9BQ8IZU0 186 aa11.01□□□□□ -0.65
SMAD3-212ENST00000559937 FRMPD1Q5SYB0 1578 aa11.01□□□□□ -0.65
SMAD3-212ENST00000559937 KDM5AP29375 1690 aaKnown RBP11.01□□□□□ -0.65
SMAD3-212ENST00000559937 LRPPRCP42704 1394 aaKnown RBP11.01□□□□□ -0.65
SMAD3-212ENST00000559937 PARD3Q8TEW0 1356 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms