RNA–Protein interactions for RNA: ENST00000559222.5

CASC4-209, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 742 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-209ENST00000559222 MROH2AA6NES4 1674 aa28.76■■■□□ 2.19
CASC4-209ENST00000559222 NCOA1Q15788 1441 aa28.74■■■□□ 2.19
CASC4-209ENST00000559222 ANKRD30AQ9BXX3 1397 aa28.72■■■□□ 2.19
CASC4-209ENST00000559222 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.72■■■□□ 2.197e-7■■■■■ 52.8
CASC4-209ENST00000559222 ITGAEP38570 1179 aa28.7■■■□□ 2.18
CASC4-209ENST00000559222 ERBINQ96RT1 1412 aa28.69■■■□□ 2.18
CASC4-209ENST00000559222 CNTLNQ9NXG0 1405 aa28.69■■■□□ 2.18
CASC4-209ENST00000559222 CEP152O94986 1710 aa28.68■■■□□ 2.18
CASC4-209ENST00000559222 KDM5DQ9BY66 1539 aa28.67■■■□□ 2.18
CASC4-209ENST00000559222 DEPDC5O75140 1603 aa28.66■■■□□ 2.18
CASC4-209ENST00000559222 ESF1Q9H501 851 aaKnown RBP28.64■■■□□ 2.18
CASC4-209ENST00000559222 PRDM15P57071 1507 aaPredicted RBP28.63■■■□□ 2.17
CASC4-209ENST00000559222 LMTK3Q96Q04 1460 aa28.62■■■□□ 2.17
CASC4-209ENST00000559222 ABCC3O15438 1527 aa28.62■■■□□ 2.17
CASC4-209ENST00000559222 ZMYM3Q14202 1370 aa28.62■■■□□ 2.17
CASC4-209ENST00000559222 PREX1Q8TCU6 1659 aa28.61■■■□□ 2.17
CASC4-209ENST00000559222 ZC3H13Q5T200 1668 aaKnown RBP28.61■■■□□ 2.17
CASC4-209ENST00000559222 FAM135AQ9P2D6 1515 aa28.59■■■□□ 2.17
CASC4-209ENST00000559222 ROCK1Q13464 1354 aa28.59■■■□□ 2.17
CASC4-209ENST00000559222 ANKRD50Q9ULJ7 1429 aa28.57■■■□□ 2.16
CASC4-209ENST00000559222 CAMSAP1Q5T5Y3 1602 aa28.57■■■□□ 2.16
CASC4-209ENST00000559222 PPP6R1Q9UPN7 881 aa28.55■■■□□ 2.16
CASC4-209ENST00000559222 WASHC2CQ9Y4E1 1318 aa28.53■■■□□ 2.16
CASC4-209ENST00000559222 VWDEQ8N2E2 1590 aa28.53■■■□□ 2.16
CASC4-209ENST00000559222 GCC2Q8IWJ2 1684 aa28.51■■■□□ 2.15
CASC4-209ENST00000559222 MYO3AQ8NEV4 1616 aa28.51■■■□□ 2.15
CASC4-209ENST00000559222 UNC13BO14795 1591 aa28.5■■■□□ 2.15
CASC4-209ENST00000559222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.5■■■□□ 2.151e-6■■■□□ 16.9
CASC4-209ENST00000559222 PZPP20742 1482 aa28.5■■■□□ 2.15
CASC4-209ENST00000559222 SETD1BQ9UPS6 1966 aaKnown RBP28.5■■■□□ 2.15
CASC4-209ENST00000559222 NPATQ14207 1427 aa28.49■■■□□ 2.15
CASC4-209ENST00000559222 CFAP65Q6ZU64 1925 aaKnown RBP28.47■■■□□ 2.15
CASC4-209ENST00000559222 FBXO31Q5XUX0 539 aaPredicted RBP28.47■■■□□ 2.15
CASC4-209ENST00000559222 HSPA2P54652 639 aa28.46■■■□□ 2.15
CASC4-209ENST00000559222 UHRF1BP1Q6BDS2 1440 aa28.44■■■□□ 2.14
CASC4-209ENST00000559222 LMTK2Q8IWU2 1503 aa28.43■■■□□ 2.14
CASC4-209ENST00000559222 NAIPQ13075 1403 aa28.43■■■□□ 2.14
CASC4-209ENST00000559222 ZNF142P52746 1687 aaPredicted RBP28.42■■■□□ 2.14
CASC4-209ENST00000559222 SPATA31D1Q6ZQQ2 1576 aa28.4■■■□□ 2.14
CASC4-209ENST00000559222 ERVK-7P63135 1459 aa28.39■■■□□ 2.13
CASC4-209ENST00000559222 EFCAB6Q5THR3 1501 aa28.38■■■□□ 2.13
CASC4-209ENST00000559222 KANK1Q14678 1352 aa28.38■■■□□ 2.13
CASC4-209ENST00000559222 CEP170BQ9Y4F5 1589 aaPredicted RBP28.38■■■□□ 2.13
CASC4-209ENST00000559222 IQGAP3Q86VI3 1631 aa28.37■■■□□ 2.13
CASC4-209ENST00000559222 TNRQ92752 1358 aa28.37■■■□□ 2.13
CASC4-209ENST00000559222 TET3O43151 1660 aa28.36■■■□□ 2.13
CASC4-209ENST00000559222 HFM1A2PYH4 1435 aa28.35■■■□□ 2.13
CASC4-209ENST00000559222 ARHGAP31Q2M1Z3 1444 aa28.35■■■□□ 2.13
CASC4-209ENST00000559222 STRCQ7RTU9 1775 aa28.33■■■□□ 2.13
CASC4-209ENST00000559222 E9PCH4 1651 aa28.31■■■□□ 2.12
CASC4-209ENST00000559222 SYNMO15061 1565 aa28.29■■■□□ 2.12
CASC4-209ENST00000559222 A2ML1A8K2U0 1454 aa28.28■■■□□ 2.12
CASC4-209ENST00000559222 NUP155O75694 1391 aa28.26■■■□□ 2.12
CASC4-209ENST00000559222 NLRP1Q9C000 1473 aa28.22■■■□□ 2.11
CASC4-209ENST00000559222 NOS1P29475 1434 aa28.21■■■□□ 2.11
CASC4-209ENST00000559222 PIK3C2BO00750 1634 aa28.21■■■□□ 2.11
CASC4-209ENST00000559222 UBR1Q8IWV7 1749 aa28.21■■■□□ 2.11
CASC4-209ENST00000559222 RPRD2Q5VT52 1461 aaKnown RBP28.19■■■□□ 2.1
CASC4-209ENST00000559222 UGGT1Q9NYU2 1555 aa28.18■■■□□ 2.1
CASC4-209ENST00000559222 PLA2R1Q13018 1463 aa28.14■■■□□ 2.09
CASC4-209ENST00000559222 POLR1AO95602 1720 aaPredicted RBP28.13■■■□□ 2.09
CASC4-209ENST00000559222 MYO5BQ9ULV0 1848 aa28.12■■■□□ 2.09
CASC4-209ENST00000559222 SPHKAPQ2M3C7 1700 aa28.12■■■□□ 2.09
CASC4-209ENST00000559222 NCKAP5LQ9HCH0 1330 aa28.11■■■□□ 2.09
CASC4-209ENST00000559222 TRIM52Q96A61 297 aa28.1■■■□□ 2.09
CASC4-209ENST00000559222 NEURL4Q96JN8 1562 aa28.1■■■□□ 2.09
CASC4-209ENST00000559222 SETD5Q9C0A6 1442 aa28.09■■■□□ 2.09
CASC4-209ENST00000559222 FBXO41Q8TF61 875 aa28.09■■■□□ 2.09
CASC4-209ENST00000559222 IDI1Q13907 227 aa28.07■■■□□ 2.08
CASC4-209ENST00000559222 ADGRB3O60242 1522 aa28.07■■■□□ 2.08
CASC4-209ENST00000559222 KDM5AP29375 1690 aaKnown RBP28.05■■■□□ 2.08
CASC4-209ENST00000559222 RAB3GAP2Q9H2M9 1393 aa28.05■■■□□ 2.08
CASC4-209ENST00000559222 TMEM131LA2VDJ0 1609 aa28.02■■■□□ 2.08
CASC4-209ENST00000559222 CLTCL1P53675 1640 aa28■■■□□ 2.07
CASC4-209ENST00000559222 THEMISQ8N1K5 641 aaPredicted RBP28■■■□□ 2.07
CASC4-209ENST00000559222 ARHGAP23Q9P227 1491 aa28■■■□□ 2.07
CASC4-209ENST00000559222 PTPRTO14522 1441 aa28■■■□□ 2.07
CASC4-209ENST00000559222 SLIT1O75093 1534 aa27.99■■■□□ 2.07
CASC4-209ENST00000559222 PKD2Q13563 968 aa27.98■■■□□ 2.07
CASC4-209ENST00000559222 TRPM2O94759 1503 aa27.97■■■□□ 2.07
CASC4-209ENST00000559222 SLC4A1APQ9BWU0 796 aaKnown RBP27.97■■■□□ 2.07
CASC4-209ENST00000559222 FOXD1Q16676 465 aa27.96■■■□□ 2.07
CASC4-209ENST00000559222 SLC52A1Q9NWF4 448 aa27.95■■■□□ 2.06
CASC4-209ENST00000559222 IQGAP1P46940 1657 aa27.94■■■□□ 2.06
CASC4-209ENST00000559222 TMEM2Q9UHN6 1383 aa27.92■■■□□ 2.06
CASC4-209ENST00000559222 STAG3Q9UJ98 1225 aa27.92■■■□□ 2.06
CASC4-209ENST00000559222 MED14O60244 1454 aa27.91■■■□□ 2.06
CASC4-209ENST00000559222 SCAF11Q99590 1463 aaKnown RBP27.91■■■□□ 2.06
CASC4-209ENST00000559222 LTKP29376 864 aa27.91■■■□□ 2.06
CASC4-209ENST00000559222 ANKLE2Q86XL3 938 aa27.9■■■□□ 2.06
CASC4-209ENST00000559222 MPHOSPH9Q99550 1183 aa27.9■■■□□ 2.06
CASC4-209ENST00000559222 DMRT2Q9Y5R5 561 aa27.9■■■□□ 2.06
CASC4-209ENST00000559222 NPHP4O75161 1426 aaPredicted RBP27.9■■■□□ 2.06
CASC4-209ENST00000559222 CHGAP10645 457 aaKnown RBP27.87■■■□□ 2.05
CASC4-209ENST00000559222 ZFYVE9O95405 1425 aa27.86■■■□□ 2.05
CASC4-209ENST00000559222 KIF1BO60333 1816 aa27.86■■■□□ 2.05
CASC4-209ENST00000559222 LTBP4Q8N2S1 1624 aa27.85■■■□□ 2.05
CASC4-209ENST00000559222 TXNDC2Q86VQ3 553 aa27.84■■■□□ 2.05
CASC4-209ENST00000559222 RIMS2Q9UQ26 1411 aa27.83■■■□□ 2.05
CASC4-209ENST00000559222 ZNF335Q9H4Z2 1342 aaPredicted RBP27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms