RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 FBXO31Q5XUX0 539 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-216ENST00000554975 PHF23Q9BUL5 403 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-216ENST00000554975 PLEKHH2Q8IVE3 1493 aa17.51■□□□□ 0.39
SHMT2-216ENST00000554975 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-216ENST00000554975 TNRQ92752 1358 aa17.51■□□□□ 0.39
SHMT2-216ENST00000554975 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.5■□□□□ 0.39
SHMT2-216ENST00000554975 CFDP1Q9UEE9 299 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-216ENST00000554975 DEPDC5O75140 1603 aa17.49■□□□□ 0.39
SHMT2-216ENST00000554975 IQGAP1P46940 1657 aa17.48■□□□□ 0.39
SHMT2-216ENST00000554975 ZNF644Q9H582 1327 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-216ENST00000554975 PZPP20742 1482 aa17.48■□□□□ 0.39
SHMT2-216ENST00000554975 MBD5Q9P267 1494 aa17.47■□□□□ 0.39
SHMT2-216ENST00000554975 TIAM1Q13009 1591 aa17.47■□□□□ 0.39
SHMT2-216ENST00000554975 MED14O60244 1454 aa17.46■□□□□ 0.39
SHMT2-216ENST00000554975 CCNB3Q8WWL7 1395 aa17.46■□□□□ 0.39
SHMT2-216ENST00000554975 RNF17Q9BXT8 1623 aaKnown RBP17.46■□□□□ 0.39
SHMT2-216ENST00000554975 KDM5DQ9BY66 1539 aa17.46■□□□□ 0.39
SHMT2-216ENST00000554975 NPHP4O75161 1426 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-216ENST00000554975 RGS17Q9UGC6 210 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-216ENST00000554975 LRRC7Q96NW7 1537 aa17.45■□□□□ 0.38
SHMT2-216ENST00000554975 UGGT1Q9NYU2 1555 aa17.45■□□□□ 0.38
SHMT2-216ENST00000554975 XIRP1Q702N8 1843 aaKnown RBP17.44■□□□□ 0.38
SHMT2-216ENST00000554975 DHX29Q7Z478 1369 aaKnown RBP17.43■□□□□ 0.38
SHMT2-216ENST00000554975 ANKLE2Q86XL3 938 aa17.43■□□□□ 0.38
SHMT2-216ENST00000554975 SYNMO15061 1565 aa17.43■□□□□ 0.38
SHMT2-216ENST00000554975 ZC3H13Q5T200 1668 aaKnown RBP17.42■□□□□ 0.38
SHMT2-216ENST00000554975 RTEL1-TNFRSF6BF6WH68 1400 aa17.41■□□□□ 0.38
SHMT2-216ENST00000554975 CFAP65Q6ZU64 1925 aaKnown RBP17.41■□□□□ 0.38
SHMT2-216ENST00000554975 MIA2Q96PC5 1412 aa17.4■□□□□ 0.38
SHMT2-216ENST00000554975 NLRP1Q9C000 1473 aa17.4■□□□□ 0.38
SHMT2-216ENST00000554975 KIF3BO15066 747 aa17.4■□□□□ 0.38
SHMT2-216ENST00000554975 FAM135AQ9P2D6 1515 aa17.4■□□□□ 0.38
SHMT2-216ENST00000554975 THEMISQ8N1K5 641 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-216ENST00000554975 LOC105371045A0A1W2PR82 267 aa17.37■□□□□ 0.37
SHMT2-216ENST00000554975 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
SHMT2-216ENST00000554975 WASHC2CQ9Y4E1 1318 aa17.35■□□□□ 0.37
SHMT2-216ENST00000554975 SETD1AO15047 1707 aaKnown RBP17.35■□□□□ 0.37
SHMT2-216ENST00000554975 UBR1Q8IWV7 1749 aa17.35■□□□□ 0.37
SHMT2-216ENST00000554975 EHBP1L1Q8N3D4 1523 aa17.32■□□□□ 0.36
SHMT2-216ENST00000554975 CCDC141Q6ZP82 1450 aa17.32■□□□□ 0.36
SHMT2-216ENST00000554975 CAMSAP2Q08AD1 1489 aa17.31■□□□□ 0.36
SHMT2-216ENST00000554975 CEP152O94986 1710 aa17.31■□□□□ 0.36
SHMT2-216ENST00000554975 POTEAQ6S8J7 498 aa17.31■□□□□ 0.36
SHMT2-216ENST00000554975 ABCC3O15438 1527 aa17.31■□□□□ 0.36
SHMT2-216ENST00000554975 ERVK-7P63135 1459 aa17.29■□□□□ 0.36
SHMT2-216ENST00000554975 CEP162Q5TB80 1403 aa17.29■□□□□ 0.36
SHMT2-216ENST00000554975 MROH1Q8NDA8 1641 aa17.29■□□□□ 0.36
SHMT2-216ENST00000554975 NCOA2Q15596 1464 aa17.27■□□□□ 0.36
SHMT2-216ENST00000554975 SCAF11Q99590 1463 aaKnown RBP17.26■□□□□ 0.35
SHMT2-216ENST00000554975 ARHGEF5Q12774 1597 aa17.25■□□□□ 0.35
SHMT2-216ENST00000554975 ROBO1Q9Y6N7 1651 aa17.25■□□□□ 0.35
SHMT2-216ENST00000554975 LTKP29376 864 aa17.23■□□□□ 0.35
SHMT2-216ENST00000554975 TRIM26Q12899 539 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-216ENST00000554975 ARHGAP23Q9P227 1491 aa17.23■□□□□ 0.35
SHMT2-216ENST00000554975 SLIT1O75093 1534 aa17.22■□□□□ 0.35
SHMT2-216ENST00000554975 FAM135BQ49AJ0 1406 aa17.21■□□□□ 0.35
SHMT2-216ENST00000554975 EIF2AK4Q9P2K8 1649 aaKnown RBP17.21■□□□□ 0.35
SHMT2-216ENST00000554975 HRCP23327 699 aa17.2■□□□□ 0.34
SHMT2-216ENST00000554975 PCGF6Q9BYE7 350 aa17.2■□□□□ 0.34
SHMT2-216ENST00000554975 MAP3K1Q13233 1512 aa17.19■□□□□ 0.34
SHMT2-216ENST00000554975 MAST1Q9Y2H9 1570 aa17.19■□□□□ 0.34
SHMT2-216ENST00000554975 PIK3C2BO00750 1634 aa17.18■□□□□ 0.34
SHMT2-216ENST00000554975 TXNDC2Q86VQ3 553 aa17.17■□□□□ 0.34
SHMT2-216ENST00000554975 RSPH4AQ5TD94 716 aa17.16■□□□□ 0.34
SHMT2-216ENST00000554975 TMEM94Q12767 1356 aa17.15■□□□□ 0.34
SHMT2-216ENST00000554975 PHLPP1O60346 1717 aa17.15■□□□□ 0.34
SHMT2-216ENST00000554975 RBM33Q96EV2 1170 aaKnown RBP17.14■□□□□ 0.33
SHMT2-216ENST00000554975 TSPY4P0CV99 314 aa17.12■□□□□ 0.33
SHMT2-216ENST00000554975 TSPY10P0CW01 314 aa17.12■□□□□ 0.33
SHMT2-216ENST00000554975 TET3O43151 1660 aa17.1■□□□□ 0.33
SHMT2-216ENST00000554975 PRDM15P57071 1507 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-216ENST00000554975 TMEM2Q9UHN6 1383 aa17.09■□□□□ 0.33
SHMT2-216ENST00000554975 NWD1Q149M9 1564 aa17.09■□□□□ 0.33
SHMT2-216ENST00000554975 KDM5AP29375 1690 aaKnown RBP17.08■□□□□ 0.32
SHMT2-216ENST00000554975 COL16A1Q07092 1604 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-216ENST00000554975 ARHGAP31Q2M1Z3 1444 aa17.08■□□□□ 0.32
SHMT2-216ENST00000554975 LRP6O75581 1613 aa17.07■□□□□ 0.32
SHMT2-216ENST00000554975 LRRC9Q6ZRR7 1453 aa17.07■□□□□ 0.32
SHMT2-216ENST00000554975 EID1Q9Y6B2 187 aa17.07■□□□□ 0.32
SHMT2-216ENST00000554975 DUOX2Q9NRD8 1548 aa17.06■□□□□ 0.32
SHMT2-216ENST00000554975 KCNA6P17658 529 aa17.06■□□□□ 0.32
SHMT2-216ENST00000554975 PROSER2Q86WR7 435 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-216ENST00000554975 SLC26A8Q96RN1 970 aa17.06■□□□□ 0.32
SHMT2-216ENST00000554975 EFCAB6Q5THR3 1501 aa17.06■□□□□ 0.32
SHMT2-216ENST00000554975 CROCC2H7BZ55 1655 aa17.04■□□□□ 0.32
SHMT2-216ENST00000554975 UPF1Q92900 1129 aaKnown RBP eCLIP17.04■□□□□ 0.32
SHMT2-216ENST00000554975 CHD2O14647 1828 aaKnown RBP17.04■□□□□ 0.32
SHMT2-216ENST00000554975 MYO5BQ9ULV0 1848 aa17.04■□□□□ 0.32
SHMT2-216ENST00000554975 NKTRP30414 1462 aaKnown RBP17.04■□□□□ 0.32
SHMT2-216ENST00000554975 JCADQ9P266 1359 aa17.03■□□□□ 0.32
SHMT2-216ENST00000554975 IDI1Q13907 227 aa17■□□□□ 0.31
SHMT2-216ENST00000554975 TRIM52Q96A61 297 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 SLAIN2Q9P270 581 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 SHPRHQ149N8 1683 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 ADGRB3O60242 1522 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 MSH6P52701 1360 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 KIF15Q9NS87 1388 aa16.99■□□□□ 0.31
SHMT2-216ENST00000554975 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHMT2-216ENST00000554975 STAG3Q9UJ98 1225 aa16.98■□□□□ 0.31
SHMT2-216ENST00000554975 ERBINQ96RT1 1412 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms