RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 MROH1Q8NDA8 1641 aa25.76■■□□□ 1.71
SHOX-204ENST00000554971 KIF3BO15066 747 aa25.76■■□□□ 1.71
SHOX-204ENST00000554971 MLECQ14165 292 aa25.76■■□□□ 1.71
SHOX-204ENST00000554971 DEPDC5O75140 1603 aa25.74■■□□□ 1.71
SHOX-204ENST00000554971 MADDQ8WXG6 1647 aa25.73■■□□□ 1.71
SHOX-204ENST00000554971 KDM4FA0A1W2PPD8 638 aa25.73■■□□□ 1.71
SHOX-204ENST00000554971 FER1L4A9Z1Z3 1794 aa25.72■■□□□ 1.71
SHOX-204ENST00000554971 GGT6Q6P531 493 aa25.7■■□□□ 1.7
SHOX-204ENST00000554971 PRDM15P57071 1507 aaPredicted RBP25.68■■□□□ 1.7
SHOX-204ENST00000554971 RIMS1Q86UR5 1692 aaKnown RBP25.65■■□□□ 1.7
SHOX-204ENST00000554971 UNC13BO14795 1591 aa25.65■■□□□ 1.7
SHOX-204ENST00000554971 CLTCQ00610 1675 aaKnown RBP25.64■■□□□ 1.7
SHOX-204ENST00000554971 VWDEQ8N2E2 1590 aa25.62■■□□□ 1.69
SHOX-204ENST00000554971 CEP152O94986 1710 aa25.62■■□□□ 1.69
SHOX-204ENST00000554971 KDM5DQ9BY66 1539 aa25.6■■□□□ 1.69
SHOX-204ENST00000554971 SETD5Q9C0A6 1442 aa25.6■■□□□ 1.69
SHOX-204ENST00000554971 ABCC3O15438 1527 aa25.59■■□□□ 1.69
SHOX-204ENST00000554971 ZC3H13Q5T200 1668 aaKnown RBP25.58■■□□□ 1.69
SHOX-204ENST00000554971 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.58■■□□□ 1.69
SHOX-204ENST00000554971 PPP6R1Q9UPN7 881 aa25.57■■□□□ 1.68
SHOX-204ENST00000554971 FAM135AQ9P2D6 1515 aa25.57■■□□□ 1.68
SHOX-204ENST00000554971 MROH2AA6NES4 1674 aa25.57■■□□□ 1.68
SHOX-204ENST00000554971 C3P01024 1663 aa25.56■■□□□ 1.68
SHOX-204ENST00000554971 PTPRMP28827 1452 aa25.56■■□□□ 1.68
SHOX-204ENST00000554971 WASHC2CQ9Y4E1 1318 aa25.55■■□□□ 1.68
SHOX-204ENST00000554971 RAB3GAP2Q9H2M9 1393 aa25.55■■□□□ 1.68
SHOX-204ENST00000554971 IQGAP3Q86VI3 1631 aa25.55■■□□□ 1.68
SHOX-204ENST00000554971 CNTLNQ9NXG0 1405 aa25.54■■□□□ 1.68
SHOX-204ENST00000554971 CAMSAP1Q5T5Y3 1602 aa25.53■■□□□ 1.68
SHOX-204ENST00000554971 LMTK2Q8IWU2 1503 aa25.52■■□□□ 1.68
SHOX-204ENST00000554971 CFAP65Q6ZU64 1925 aaKnown RBP25.51■■□□□ 1.67
SHOX-204ENST00000554971 NUP155O75694 1391 aa25.51■■□□□ 1.67
SHOX-204ENST00000554971 ZMYM3Q14202 1370 aa25.51■■□□□ 1.67
SHOX-204ENST00000554971 KANK1Q14678 1352 aa25.49■■□□□ 1.67
SHOX-204ENST00000554971 CEBPAP49715 358 aaPredicted RBP25.49■■□□□ 1.67
SHOX-204ENST00000554971 ESF1Q9H501 851 aaKnown RBP25.49■■□□□ 1.67
SHOX-204ENST00000554971 TET3O43151 1660 aa25.48■■□□□ 1.67
SHOX-204ENST00000554971 EFCAB6Q5THR3 1501 aa25.47■■□□□ 1.67
SHOX-204ENST00000554971 PZPP20742 1482 aa25.46■■□□□ 1.67
SHOX-204ENST00000554971 NPATQ14207 1427 aa25.44■■□□□ 1.66
SHOX-204ENST00000554971 E9PCH4 1651 aa25.44■■□□□ 1.66
SHOX-204ENST00000554971 PLPPR3Q6T4P5 718 aa25.43■■□□□ 1.66
SHOX-204ENST00000554971 ARHGAP31Q2M1Z3 1444 aa25.42■■□□□ 1.66
SHOX-204ENST00000554971 TRIM52Q96A61 297 aa25.41■■□□□ 1.66
SHOX-204ENST00000554971 CLSPNQ9HAW4 1339 aa25.41■■□□□ 1.66
SHOX-204ENST00000554971 PREX1Q8TCU6 1659 aa25.39■■□□□ 1.66
SHOX-204ENST00000554971 SETD1BQ9UPS6 1966 aaKnown RBP25.39■■□□□ 1.66
SHOX-204ENST00000554971 FBXO31Q5XUX0 539 aaPredicted RBP25.39■■□□□ 1.66
SHOX-204ENST00000554971 SPATA31D1Q6ZQQ2 1576 aa25.36■■□□□ 1.65
SHOX-204ENST00000554971 ERVK-7P63135 1459 aa25.35■■□□□ 1.65
SHOX-204ENST00000554971 RPRD2Q5VT52 1461 aaKnown RBP25.35■■□□□ 1.65
SHOX-204ENST00000554971 SLC4A1APQ9BWU0 796 aaKnown RBP25.33■■□□□ 1.65
SHOX-204ENST00000554971 MPHOSPH9Q99550 1183 aa25.31■■□□□ 1.64
SHOX-204ENST00000554971 SYNMO15061 1565 aa25.31■■□□□ 1.64
SHOX-204ENST00000554971 NOS1P29475 1434 aa25.3■■□□□ 1.64
SHOX-204ENST00000554971 PKD2Q13563 968 aa25.29■■□□□ 1.64
SHOX-204ENST00000554971 ACIN1Q9UKV3 1341 aaKnown RBP25.29■■□□□ 1.64
SHOX-204ENST00000554971 DIEXFQ68CQ4 756 aaKnown RBP25.29■■□□□ 1.64
SHOX-204ENST00000554971 SPHKAPQ2M3C7 1700 aa25.29■■□□□ 1.64
SHOX-204ENST00000554971 MYO3AQ8NEV4 1616 aa25.28■■□□□ 1.64
SHOX-204ENST00000554971 ZNF316A6NFI3 1004 aaPredicted RBP25.27■■□□□ 1.64
SHOX-204ENST00000554971 FOXD1Q16676 465 aa25.27■■□□□ 1.64
SHOX-204ENST00000554971 TNRQ92752 1358 aa25.26■■□□□ 1.63
SHOX-204ENST00000554971 PLA2R1Q13018 1463 aa25.25■■□□□ 1.63
SHOX-204ENST00000554971 PTPRTO14522 1441 aa25.24■■□□□ 1.63
SHOX-204ENST00000554971 UGGT1Q9NYU2 1555 aa25.24■■□□□ 1.63
SHOX-204ENST00000554971 PIK3C2BO00750 1634 aa25.22■■□□□ 1.63
SHOX-204ENST00000554971 ZNF142P52746 1687 aaPredicted RBP25.21■■□□□ 1.63
SHOX-204ENST00000554971 LMTK3Q96Q04 1460 aa25.21■■□□□ 1.63
SHOX-204ENST00000554971 TRPM2O94759 1503 aa25.2■■□□□ 1.62
SHOX-204ENST00000554971 CEP170BQ9Y4F5 1589 aaPredicted RBP25.2■■□□□ 1.62
SHOX-204ENST00000554971 AEBP2Q6ZN18 517 aaPredicted RBP25.19■■□□□ 1.62
SHOX-204ENST00000554971 UHRF1BP1Q6BDS2 1440 aa25.18■■□□□ 1.62
SHOX-204ENST00000554971 NLRP1Q9C000 1473 aa25.17■■□□□ 1.62
SHOX-204ENST00000554971 CLTCL1P53675 1640 aa25.16■■□□□ 1.62
SHOX-204ENST00000554971 IDI1Q13907 227 aa25.16■■□□□ 1.62
SHOX-204ENST00000554971 DHX57Q6P158 1386 aaKnown RBP25.15■■□□□ 1.62
SHOX-204ENST00000554971 UBR1Q8IWV7 1749 aa25.15■■□□□ 1.62
SHOX-204ENST00000554971 A2ML1A8K2U0 1454 aa25.15■■□□□ 1.62
SHOX-204ENST00000554971 MYO5BQ9ULV0 1848 aa25.14■■□□□ 1.62
SHOX-204ENST00000554971 SLC52A1Q9NWF4 448 aa25.12■■□□□ 1.61
SHOX-204ENST00000554971 ANKRD30BQ9BXX2 1392 aa25.11■■□□□ 1.61
SHOX-204ENST00000554971 KDM5AP29375 1690 aaKnown RBP25.1■■□□□ 1.61
SHOX-204ENST00000554971 TMEM131LA2VDJ0 1609 aa25.1■■□□□ 1.61
SHOX-204ENST00000554971 ADGRB3O60242 1522 aa25.08■■□□□ 1.61
SHOX-204ENST00000554971 HSPA2P54652 639 aa25.07■■□□□ 1.6
SHOX-204ENST00000554971 KIF1BO60333 1816 aa25.06■■□□□ 1.6
SHOX-204ENST00000554971 CCDC144AA2RUR9 1427 aa25.04■■□□□ 1.6
SHOX-204ENST00000554971 STRCQ7RTU9 1775 aa25■■□□□ 1.59
SHOX-204ENST00000554971 SLIT1O75093 1534 aa24.98■■□□□ 1.59
SHOX-204ENST00000554971 ARHGAP23Q9P227 1491 aa24.97■■□□□ 1.59
SHOX-204ENST00000554971 SPATA31E1Q6ZUB1 1445 aa24.97■■□□□ 1.59
SHOX-204ENST00000554971 THEMISQ8N1K5 641 aaPredicted RBP24.97■■□□□ 1.59
SHOX-204ENST00000554971 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
SHOX-204ENST00000554971 STAG3Q9UJ98 1225 aa24.96■■□□□ 1.59
SHOX-204ENST00000554971 CHGAP10645 457 aaKnown RBP24.96■■□□□ 1.59
SHOX-204ENST00000554971 TMEM2Q9UHN6 1383 aa24.95■■□□□ 1.58
SHOX-204ENST00000554971 POLR1AO95602 1720 aaPredicted RBP24.94■■□□□ 1.58
SHOX-204ENST00000554971 ZFYVE9O95405 1425 aa24.94■■□□□ 1.58
SHOX-204ENST00000554971 NEURL4Q96JN8 1562 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms