RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 NISCHQ9Y2I1 1504 aa40.86■■■■■ 4.13
SHOX-204ENST00000554971 CCDC180Q9P1Z9 1646 aa36.13■■■■□ 3.37
SHOX-204ENST00000554971 ABCC9O60706 1549 aa34.97■■■■□ 3.19
SHOX-204ENST00000554971 ZCCHC6Q5VYS8 1495 aaKnown RBP34.15■■■■□ 3.06
SHOX-204ENST00000554971 DCAF8L2P0C7V8 631 aa33.89■■■■□ 3.02
SHOX-204ENST00000554971 NACADO15069 1562 aa33.83■■■■□ 3.01
SHOX-204ENST00000554971 DCAF1Q9Y4B6 1507 aa33.8■■■■□ 3
SHOX-204ENST00000554971 MYO15BQ96JP2 1530 aa33.77■■■■□ 3
SHOX-204ENST00000554971 RB1CC1Q8TDY2 1594 aa33.77■■■■□ 3
SHOX-204ENST00000554971 UNC13AQ9UPW8 1703 aa33.19■■■□□ 2.9
SHOX-204ENST00000554971 SCRIBQ14160 1630 aa33.04■■■□□ 2.88
SHOX-204ENST00000554971 BICRAQ9NZM4 1560 aa32.86■■■□□ 2.85
SHOX-204ENST00000554971 PABPN1Q86U42 306 aaKnown RBP eCLIP32.74■■■□□ 2.83
SHOX-204ENST00000554971 SHROOM4Q9ULL8 1493 aa32.54■■■□□ 2.8
SHOX-204ENST00000554971 EIF4G1Q04637 1599 aaKnown RBP31.9■■■□□ 2.7
SHOX-204ENST00000554971 CECR2Q9BXF3 1484 aa31.84■■■□□ 2.69
SHOX-204ENST00000554971 DNAJC5BQ9UF47 199 aa31.79■■■□□ 2.68
SHOX-204ENST00000554971 CC2D2AQ9P2K1 1620 aa31.67■■■□□ 2.66
SHOX-204ENST00000554971 SMARCA4P51532 1647 aa31.64■■■□□ 2.66
SHOX-204ENST00000554971 BAZ1AQ9NRL2 1556 aaPredicted RBP31.61■■■□□ 2.65
SHOX-204ENST00000554971 MROH2BQ7Z745 1585 aa31.54■■■□□ 2.64
SHOX-204ENST00000554971 ATAD2BQ9ULI0 1458 aa31.34■■■□□ 2.61
SHOX-204ENST00000554971 PEG3Q9GZU2 1588 aa31.32■■■□□ 2.6
SHOX-204ENST00000554971 RSF1Q96T23 1441 aaPredicted RBP31.3■■■□□ 2.6
SHOX-204ENST00000554971 SMARCA2P51531 1590 aa31.28■■■□□ 2.6
SHOX-204ENST00000554971 WIZO95785 1651 aa31.24■■■□□ 2.59
SHOX-204ENST00000554971 NCAPD3P42695 1498 aa31.24■■■□□ 2.59
SHOX-204ENST00000554971 HMGXB3Q12766 1538 aa31.13■■■□□ 2.57
SHOX-204ENST00000554971 BAZ1BQ9UIG0 1483 aaKnown RBP31.07■■■□□ 2.56
SHOX-204ENST00000554971 TOP2AP11388 1531 aaKnown RBP30.86■■■□□ 2.53
SHOX-204ENST00000554971 SUPT5HO00267 1087 aaKnown RBP30.77■■■□□ 2.52
SHOX-204ENST00000554971 CCDC88BA6NC98 1476 aa30.52■■■□□ 2.48
SHOX-204ENST00000554971 NESP48681 1621 aa30.44■■■□□ 2.46
SHOX-204ENST00000554971 LAMC3Q9Y6N6 1575 aa30.34■■■□□ 2.45
SHOX-204ENST00000554971 CADPSQ9ULU8 1353 aa30.33■■■□□ 2.45
SHOX-204ENST00000554971 CFTRP13569 1480 aa30.28■■■□□ 2.44
SHOX-204ENST00000554971 PRDM2Q13029 1718 aa30.13■■■□□ 2.41
SHOX-204ENST00000554971 KIF21AQ7Z4S6 1674 aa30.11■■■□□ 2.41
SHOX-204ENST00000554971 PDS5BQ9NTI5 1447 aa30.07■■■□□ 2.4
SHOX-204ENST00000554971 ERCC6Q03468 1493 aa30.03■■■□□ 2.4
SHOX-204ENST00000554971 FANCD2Q9BXW9 1451 aa30■■■□□ 2.39
SHOX-204ENST00000554971 CEP164Q9UPV0 1460 aa29.9■■■□□ 2.38
SHOX-204ENST00000554971 THOC2Q8NI27 1593 aaKnown RBP29.88■■■□□ 2.37
SHOX-204ENST00000554971 MRC2Q9UBG0 1479 aa29.78■■■□□ 2.36
SHOX-204ENST00000554971 URB2Q14146 1524 aaKnown RBP29.73■■■□□ 2.35
SHOX-204ENST00000554971 WDR62O43379 1518 aa29.71■■■□□ 2.35
SHOX-204ENST00000554971 TOPBP1Q92547 1522 aa29.59■■■□□ 2.33
SHOX-204ENST00000554971 ABCC8Q09428 1581 aa29.59■■■□□ 2.33
SHOX-204ENST00000554971 DNMBPQ6XZF7 1577 aa29.58■■■□□ 2.33
SHOX-204ENST00000554971 CUX2O14529 1486 aa29.57■■■□□ 2.32
SHOX-204ENST00000554971 CUX1P39880 1505 aa29.55■■■□□ 2.32
SHOX-204ENST00000554971 WRNQ14191 1432 aaPredicted RBP eCLIP29.46■■■□□ 2.31
SHOX-204ENST00000554971 SYNJ1O43426 1573 aa29.45■■■□□ 2.3
SHOX-204ENST00000554971 TOP2BQ02880 1626 aa29.39■■■□□ 2.3
SHOX-204ENST00000554971 BIVM-ERCC5R4GMW8 1640 aa29.39■■■□□ 2.3
SHOX-204ENST00000554971 POLA1P09884 1462 aaPredicted RBP29.39■■■□□ 2.3
SHOX-204ENST00000554971 FGD5Q6ZNL6 1462 aa29.36■■■□□ 2.29
SHOX-204ENST00000554971 TARBP1Q13395 1621 aaKnown RBP29.28■■■□□ 2.28
SHOX-204ENST00000554971 RAD54L2Q9Y4B4 1467 aa29.26■■■□□ 2.27
SHOX-204ENST00000554971 IFT140Q96RY7 1462 aa29.24■■■□□ 2.27
SHOX-204ENST00000554971 SOGA1O94964 1423 aa29.2■■■□□ 2.27
SHOX-204ENST00000554971 ZNF608Q9ULD9 1512 aaPredicted RBP29.17■■■□□ 2.26
SHOX-204ENST00000554971 WDR97A6NE52 1622 aa29.16■■■□□ 2.26
SHOX-204ENST00000554971 ABCA10Q8WWZ4 1543 aa29.08■■■□□ 2.25
SHOX-204ENST00000554971 EIF4G3O43432 1585 aaKnown RBP29.07■■■□□ 2.24
SHOX-204ENST00000554971 AQRO60306 1485 aaKnown RBP eCLIP29.04■■■□□ 2.24
SHOX-204ENST00000554971 TDRD9Q8NDG6 1382 aaKnown RBP29.03■■■□□ 2.24
SHOX-204ENST00000554971 TRIM41Q8WV44 630 aa29■■■□□ 2.23
SHOX-204ENST00000554971 CHIC1Q5VXU3 224 aa28.99■■■□□ 2.23
SHOX-204ENST00000554971 ABCA5Q8WWZ7 1642 aa28.97■■■□□ 2.23
SHOX-204ENST00000554971 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
SHOX-204ENST00000554971 PBRM1Q86U86 1689 aa28.87■■■□□ 2.21
SHOX-204ENST00000554971 GRIN2BQ13224 1484 aa28.82■■■□□ 2.2
SHOX-204ENST00000554971 RUSC2Q8N2Y8 1516 aa28.77■■■□□ 2.2
SHOX-204ENST00000554971 KIF27Q86VH2 1401 aa28.77■■■□□ 2.2
SHOX-204ENST00000554971 SNAPC4Q5SXM2 1469 aa28.76■■■□□ 2.19
SHOX-204ENST00000554971 ERICH3Q5RHP9 1530 aa28.73■■■□□ 2.19
SHOX-204ENST00000554971 MAGI1Q96QZ7 1491 aaPredicted RBP28.7■■■□□ 2.19
SHOX-204ENST00000554971 IGF1RP08069 1367 aa28.66■■■□□ 2.18
SHOX-204ENST00000554971 ADAMTS12P58397 1594 aa28.65■■■□□ 2.18
SHOX-204ENST00000554971 CHD1O14646 1710 aa28.64■■■□□ 2.18
SHOX-204ENST00000554971 SYNJ2O15056 1496 aa28.59■■■□□ 2.17
SHOX-204ENST00000554971 FHAD1B1AJZ9 1412 aa28.55■■■□□ 2.16
SHOX-204ENST00000554971 CUL7Q14999 1698 aa28.55■■■□□ 2.16
SHOX-204ENST00000554971 FBLN2P98095 1184 aa28.53■■■□□ 2.16
SHOX-204ENST00000554971 CHMP7Q8WUX9 453 aaPredicted RBP28.49■■■□□ 2.15
SHOX-204ENST00000554971 GRIN2AQ12879 1464 aa28.48■■■□□ 2.15
SHOX-204ENST00000554971 CARMIL1Q5VZK9 1371 aa28.47■■■□□ 2.15
SHOX-204ENST00000554971 EEA1Q15075 1411 aa28.46■■■□□ 2.15
SHOX-204ENST00000554971 FAM9AQ8IZU1 332 aaPredicted RBP28.43■■■□□ 2.14
SHOX-204ENST00000554971 OSCARQ8IYS5 282 aa28.4■■■□□ 2.14
SHOX-204ENST00000554971 CSRNP3Q8WYN3 585 aa28.4■■■□□ 2.14
SHOX-204ENST00000554971 PRXQ9BXM0 1461 aa28.4■■■□□ 2.14
SHOX-204ENST00000554971 CEP170Q5SW79 1584 aa28.37■■■□□ 2.13
SHOX-204ENST00000554971 RAPGEF2Q9Y4G8 1499 aa28.34■■■□□ 2.13
SHOX-204ENST00000554971 NUP160Q12769 1436 aa28.34■■■□□ 2.13
SHOX-204ENST00000554971 CLASP1Q7Z460 1538 aa28.31■■■□□ 2.12
SHOX-204ENST00000554971 KIF21BO75037 1637 aa28.23■■■□□ 2.11
SHOX-204ENST00000554971 DNAJC5Q9H3Z4 198 aa28.2■■■□□ 2.1
SHOX-204ENST00000554971 KIAA0586Q9BVV6 1533 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms