RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHMT2-209ENST00000553949 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
SHMT2-209ENST00000553949 RAB3GAP2Q9H2M9 1393 aa18.29■□□□□ 0.52
SHMT2-209ENST00000553949 DEPDC5O75140 1603 aa18.27■□□□□ 0.51
SHMT2-209ENST00000553949 MROH1Q8NDA8 1641 aa18.27■□□□□ 0.51
SHMT2-209ENST00000553949 PRDM15P57071 1507 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-209ENST00000553949 ESF1Q9H501 851 aaKnown RBP18.25■□□□□ 0.51
SHMT2-209ENST00000553949 KANK1Q14678 1352 aa18.25■□□□□ 0.51
SHMT2-209ENST00000553949 UNC13BO14795 1591 aa18.25■□□□□ 0.51
SHMT2-209ENST00000553949 WASHC2CQ9Y4E1 1318 aa18.24■□□□□ 0.51
SHMT2-209ENST00000553949 NUP155O75694 1391 aa18.24■□□□□ 0.51
SHMT2-209ENST00000553949 ADAMTSL3P82987 1691 aa18.24■□□□□ 0.51
SHMT2-209ENST00000553949 KDM4FA0A1W2PPD8 638 aa18.23■□□□□ 0.51
SHMT2-209ENST00000553949 HRCP23327 699 aa18.23■□□□□ 0.51
SHMT2-209ENST00000553949 TRIM52Q96A61 297 aa18.23■□□□□ 0.51
SHMT2-209ENST00000553949 KDM5DQ9BY66 1539 aa18.23■□□□□ 0.51
SHMT2-209ENST00000553949 ACIN1Q9UKV3 1341 aaKnown RBP18.23■□□□□ 0.51
SHMT2-209ENST00000553949 ABCC3O15438 1527 aa18.22■□□□□ 0.51
SHMT2-209ENST00000553949 FAM135AQ9P2D6 1515 aa18.22■□□□□ 0.51
SHMT2-209ENST00000553949 CNTLNQ9NXG0 1405 aa18.22■□□□□ 0.51
SHMT2-209ENST00000553949 VWDEQ8N2E2 1590 aa18.21■□□□□ 0.51
SHMT2-209ENST00000553949 MADDQ8WXG6 1647 aa18.21■□□□□ 0.51
SHMT2-209ENST00000553949 LMTK2Q8IWU2 1503 aa18.18■□□□□ 0.5
SHMT2-209ENST00000553949 FER1L4A9Z1Z3 1794 aa18.17■□□□□ 0.5
SHMT2-209ENST00000553949 ZMYM3Q14202 1370 aa18.17■□□□□ 0.5
SHMT2-209ENST00000553949 IQGAP3Q86VI3 1631 aa18.16■□□□□ 0.5
SHMT2-209ENST00000553949 CLTCQ00610 1675 aaKnown RBP18.16■□□□□ 0.5
SHMT2-209ENST00000553949 ZC3H13Q5T200 1668 aaKnown RBP18.16■□□□□ 0.5
SHMT2-209ENST00000553949 PZPP20742 1482 aa18.15■□□□□ 0.5
SHMT2-209ENST00000553949 SLC4A1APQ9BWU0 796 aaKnown RBP18.14■□□□□ 0.49
SHMT2-209ENST00000553949 RIMS1Q86UR5 1692 aaKnown RBP18.14■□□□□ 0.49
SHMT2-209ENST00000553949 CEP152O94986 1710 aa18.14■□□□□ 0.49
SHMT2-209ENST00000553949 PTPRMP28827 1452 aa18.14■□□□□ 0.49
SHMT2-209ENST00000553949 CEBPAP49715 358 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-209ENST00000553949 MPHOSPH9Q99550 1183 aa18.13■□□□□ 0.49
SHMT2-209ENST00000553949 ARHGAP31Q2M1Z3 1444 aa18.13■□□□□ 0.49
SHMT2-209ENST00000553949 EFCAB6Q5THR3 1501 aa18.12■□□□□ 0.49
SHMT2-209ENST00000553949 CAMSAP1Q5T5Y3 1602 aa18.12■□□□□ 0.49
SHMT2-209ENST00000553949 MROH2AA6NES4 1674 aa18.12■□□□□ 0.49
SHMT2-209ENST00000553949 PLPPR3Q6T4P5 718 aa18.11■□□□□ 0.49
SHMT2-209ENST00000553949 NPATQ14207 1427 aa18.11■□□□□ 0.49
SHMT2-209ENST00000553949 TET3O43151 1660 aa18.11■□□□□ 0.49
SHMT2-209ENST00000553949 PKD2Q13563 968 aa18.09■□□□□ 0.49
SHMT2-209ENST00000553949 RPRD2Q5VT52 1461 aaKnown RBP18.08■□□□□ 0.49
SHMT2-209ENST00000553949 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
SHMT2-209ENST00000553949 C3P01024 1663 aa18.07■□□□□ 0.48
SHMT2-209ENST00000553949 FOXD1Q16676 465 aa18.05■□□□□ 0.48
SHMT2-209ENST00000553949 ERVK-7P63135 1459 aa18.05■□□□□ 0.48
SHMT2-209ENST00000553949 E9PCH4 1651 aa18.04■□□□□ 0.48
SHMT2-209ENST00000553949 NOS1P29475 1434 aa18.03■□□□□ 0.48
SHMT2-209ENST00000553949 SPATA31D1Q6ZQQ2 1576 aa18.02■□□□□ 0.48
SHMT2-209ENST00000553949 TNRQ92752 1358 aa18.02■□□□□ 0.47
SHMT2-209ENST00000553949 DHX57Q6P158 1386 aaKnown RBP18.01■□□□□ 0.47
SHMT2-209ENST00000553949 PTPRTO14522 1441 aa18■□□□□ 0.47
SHMT2-209ENST00000553949 PREX1Q8TCU6 1659 aa17.99■□□□□ 0.47
SHMT2-209ENST00000553949 PLA2R1Q13018 1463 aa17.99■□□□□ 0.47
SHMT2-209ENST00000553949 SYNMO15061 1565 aa17.96■□□□□ 0.47
SHMT2-209ENST00000553949 SLC52A1Q9NWF4 448 aa17.96■□□□□ 0.47
SHMT2-209ENST00000553949 ANKRD30BQ9BXX2 1392 aa17.95■□□□□ 0.46
SHMT2-209ENST00000553949 TRPM2O94759 1503 aa17.95■□□□□ 0.46
SHMT2-209ENST00000553949 IDI1Q13907 227 aa17.94■□□□□ 0.46
SHMT2-209ENST00000553949 NLRP1Q9C000 1473 aa17.94■□□□□ 0.46
SHMT2-209ENST00000553949 SPHKAPQ2M3C7 1700 aa17.93■□□□□ 0.46
SHMT2-209ENST00000553949 CFAP65Q6ZU64 1925 aaKnown RBP17.93■□□□□ 0.46
SHMT2-209ENST00000553949 UGGT1Q9NYU2 1555 aa17.92■□□□□ 0.46
SHMT2-209ENST00000553949 UHRF1BP1Q6BDS2 1440 aa17.92■□□□□ 0.46
SHMT2-209ENST00000553949 MYO3AQ8NEV4 1616 aa17.91■□□□□ 0.46
SHMT2-209ENST00000553949 CCDC144AA2RUR9 1427 aa17.91■□□□□ 0.46
SHMT2-209ENST00000553949 AEBP2Q6ZN18 517 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-209ENST00000553949 PIK3C2BO00750 1634 aa17.9■□□□□ 0.46
SHMT2-209ENST00000553949 A2ML1A8K2U0 1454 aa17.89■□□□□ 0.45
SHMT2-209ENST00000553949 SETD1BQ9UPS6 1966 aaKnown RBP17.89■□□□□ 0.45
SHMT2-209ENST00000553949 CLTCL1P53675 1640 aa17.88■□□□□ 0.45
SHMT2-209ENST00000553949 CEP170BQ9Y4F5 1589 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-209ENST00000553949 STAG3Q9UJ98 1225 aa17.87■□□□□ 0.45
SHMT2-209ENST00000553949 CHGAP10645 457 aaKnown RBP17.86■□□□□ 0.45
SHMT2-209ENST00000553949 CCER1Q8TC90 406 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-209ENST00000553949 LMTK3Q96Q04 1460 aa17.86■□□□□ 0.45
SHMT2-209ENST00000553949 ADGRB3O60242 1522 aa17.84■□□□□ 0.45
SHMT2-209ENST00000553949 ZNF142P52746 1687 aaPredicted RBP17.83■□□□□ 0.45
SHMT2-209ENST00000553949 THEMISQ8N1K5 641 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-209ENST00000553949 SIN3AQ96ST3 1273 aa17.83■□□□□ 0.44
SHMT2-209ENST00000553949 CLSPNQ9HAW4 1339 aa17.82■□□□□ 0.44
SHMT2-209ENST00000553949 TMEM131LA2VDJ0 1609 aa17.82■□□□□ 0.44
SHMT2-209ENST00000553949 SPATA31E1Q6ZUB1 1445 aa17.81■□□□□ 0.44
SHMT2-209ENST00000553949 UBR1Q8IWV7 1749 aa17.81■□□□□ 0.44
SHMT2-209ENST00000553949 HSPA2P54652 639 aa17.8■□□□□ 0.44
SHMT2-209ENST00000553949 KDM5AP29375 1690 aaKnown RBP17.8■□□□□ 0.44
SHMT2-209ENST00000553949 NEUROD1Q13562 356 aa17.79■□□□□ 0.44
SHMT2-209ENST00000553949 ZNF326Q5BKZ1 582 aaKnown RBP17.79■□□□□ 0.44
SHMT2-209ENST00000553949 TMEM2Q9UHN6 1383 aa17.79■□□□□ 0.44
SHMT2-209ENST00000553949 RGL3Q3MIN7 710 aa17.78■□□□□ 0.44
SHMT2-209ENST00000553949 NEURL4Q96JN8 1562 aa17.77■□□□□ 0.44
SHMT2-209ENST00000553949 KIF1BO60333 1816 aa17.77■□□□□ 0.43
SHMT2-209ENST00000553949 SLIT1O75093 1534 aa17.76■□□□□ 0.43
SHMT2-209ENST00000553949 ARHGAP23Q9P227 1491 aa17.75■□□□□ 0.43
SHMT2-209ENST00000553949 RPGRIP1LQ68CZ1 1315 aa17.74■□□□□ 0.43
SHMT2-209ENST00000553949 ZFYVE9O95405 1425 aa17.74■□□□□ 0.43
SHMT2-209ENST00000553949 RIMS2Q9UQ26 1411 aa17.74■□□□□ 0.43
SHMT2-209ENST00000553949 TXNDC2Q86VQ3 553 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms