RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CROCC2H7BZ55 1655 aa11.26□□□□□ -0.61
LIMA1-216ENST00000552909 PTPRKQ15262 1439 aa11.25□□□□□ -0.61
LIMA1-216ENST00000552909 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
LIMA1-216ENST00000552909 SHANK2Q9UPX8 1470 aa11.24□□□□□ -0.61
LIMA1-216ENST00000552909 ITGAEP38570 1179 aa11.24□□□□□ -0.61
LIMA1-216ENST00000552909 KIF15Q9NS87 1388 aa11.24□□□□□ -0.61
LIMA1-216ENST00000552909 NCOA1Q15788 1441 aa11.22□□□□□ -0.61
LIMA1-216ENST00000552909 ZMYM3Q14202 1370 aa11.22□□□□□ -0.61
LIMA1-216ENST00000552909 C3P01024 1663 aa11.21□□□□□ -0.61
LIMA1-216ENST00000552909 CLTCQ00610 1675 aaKnown RBP11.21□□□□□ -0.62
LIMA1-216ENST00000552909 DUOX2Q9NRD8 1548 aa11.21□□□□□ -0.62
LIMA1-216ENST00000552909 ANKRD30AQ9BXX3 1397 aa11.21□□□□□ -0.62
LIMA1-216ENST00000552909 CNTLNQ9NXG0 1405 aa11.19□□□□□ -0.62
LIMA1-216ENST00000552909 RRBP1Q9P2E9 1410 aaKnown RBP11.19□□□□□ -0.62
LIMA1-216ENST00000552909 WASHC2CQ9Y4E1 1318 aa11.19□□□□□ -0.62
LIMA1-216ENST00000552909 PPP6R1Q9UPN7 881 aa11.19□□□□□ -0.62
LIMA1-216ENST00000552909 LMTK3Q96Q04 1460 aa11.19□□□□□ -0.62
LIMA1-216ENST00000552909 HSPA2P54652 639 aa11.18□□□□□ -0.62
LIMA1-216ENST00000552909 BCL11AQ9H165 835 aa11.18□□□□□ -0.62
LIMA1-216ENST00000552909 ADGRL2O95490 1459 aa11.18□□□□□ -0.62
LIMA1-216ENST00000552909 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIMA1-216ENST00000552909 SETD1BQ9UPS6 1966 aaKnown RBP11.18□□□□□ -0.62
LIMA1-216ENST00000552909 YTHDC1Q96MU7 727 aaKnown RBP11.17□□□□□ -0.62
LIMA1-216ENST00000552909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.17□□□□□ -0.628e-10■■■□□ 17.1
LIMA1-216ENST00000552909 MROH1Q8NDA8 1641 aa11.17□□□□□ -0.62
LIMA1-216ENST00000552909 EIF2AK4Q9P2K8 1649 aaKnown RBP11.17□□□□□ -0.62
LIMA1-216ENST00000552909 FBXO31Q5XUX0 539 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-216ENST00000552909 ERBINQ96RT1 1412 aa11.17□□□□□ -0.62
LIMA1-216ENST00000552909 MROH2AA6NES4 1674 aa11.16□□□□□ -0.62
LIMA1-216ENST00000552909 RNF17Q9BXT8 1623 aaKnown RBP11.16□□□□□ -0.62
LIMA1-216ENST00000552909 KDM5DQ9BY66 1539 aa11.15□□□□□ -0.62
LIMA1-216ENST00000552909 ANKRD50Q9ULJ7 1429 aa11.15□□□□□ -0.63
LIMA1-216ENST00000552909 ZNF316A6NFI3 1004 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-216ENST00000552909 ROCK1Q13464 1354 aa11.14□□□□□ -0.63
LIMA1-216ENST00000552909 CFAP65Q6ZU64 1925 aaKnown RBP11.14□□□□□ -0.63
LIMA1-216ENST00000552909 ABCC3O15438 1527 aa11.14□□□□□ -0.63
LIMA1-216ENST00000552909 PREX1Q8TCU6 1659 aa11.13□□□□□ -0.63
LIMA1-216ENST00000552909 CEP152O94986 1710 aa11.13□□□□□ -0.63
LIMA1-216ENST00000552909 PRDM15P57071 1507 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-216ENST00000552909 ANP32EQ9BTT0 268 aa11.12□□□□□ -0.63
LIMA1-216ENST00000552909 NPATQ14207 1427 aa11.12□□□□□ -0.63
LIMA1-216ENST00000552909 UHRF1BP1Q6BDS2 1440 aa11.12□□□□□ -0.63
LIMA1-216ENST00000552909 DEPDC5O75140 1603 aa11.12□□□□□ -0.63
LIMA1-216ENST00000552909 PZPP20742 1482 aa11.11□□□□□ -0.63
LIMA1-216ENST00000552909 FAM135AQ9P2D6 1515 aa11.11□□□□□ -0.63
LIMA1-216ENST00000552909 ZC3H13Q5T200 1668 aaKnown RBP11.09□□□□□ -0.63
LIMA1-216ENST00000552909 VWDEQ8N2E2 1590 aa11.09□□□□□ -0.63
LIMA1-216ENST00000552909 CAMSAP1Q5T5Y3 1602 aa11.08□□□□□ -0.63
LIMA1-216ENST00000552909 KANK1Q14678 1352 aa11.08□□□□□ -0.64
LIMA1-216ENST00000552909 TNRQ92752 1358 aa11.08□□□□□ -0.64
LIMA1-216ENST00000552909 NAIPQ13075 1403 aa11.08□□□□□ -0.64
LIMA1-216ENST00000552909 MYO3AQ8NEV4 1616 aa11.07□□□□□ -0.64
LIMA1-216ENST00000552909 CLSPNQ9HAW4 1339 aa11.07□□□□□ -0.64
LIMA1-216ENST00000552909 ERVK-7P63135 1459 aa11.06□□□□□ -0.64
LIMA1-216ENST00000552909 ARHGAP31Q2M1Z3 1444 aa11.06□□□□□ -0.64
LIMA1-216ENST00000552909 STRCQ7RTU9 1775 aa11.05□□□□□ -0.64
LIMA1-216ENST00000552909 CEP170BQ9Y4F5 1589 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-216ENST00000552909 LMTK2Q8IWU2 1503 aa11.05□□□□□ -0.64
LIMA1-216ENST00000552909 NUP155O75694 1391 aa11.05□□□□□ -0.64
LIMA1-216ENST00000552909 UNC13BO14795 1591 aa11.05□□□□□ -0.64
LIMA1-216ENST00000552909 SPATA31D1Q6ZQQ2 1576 aa11.05□□□□□ -0.64
LIMA1-216ENST00000552909 MIER1Q8N108 512 aa11.04□□□□□ -0.64
LIMA1-216ENST00000552909 A2ML1A8K2U0 1454 aa11.04□□□□□ -0.64
LIMA1-216ENST00000552909 HFM1A2PYH4 1435 aa11.04□□□□□ -0.64
LIMA1-216ENST00000552909 EFCAB6Q5THR3 1501 aa11.03□□□□□ -0.64
LIMA1-216ENST00000552909 ZNF142P52746 1687 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-216ENST00000552909 NCKAP5LQ9HCH0 1330 aa11.03□□□□□ -0.64
LIMA1-216ENST00000552909 GCC2Q8IWJ2 1684 aa11.02□□□□□ -0.65
LIMA1-216ENST00000552909 NLRP1Q9C000 1473 aa11.01□□□□□ -0.65
LIMA1-216ENST00000552909 IDI1Q13907 227 aa11.01□□□□□ -0.65
LIMA1-216ENST00000552909 IQGAP3Q86VI3 1631 aa11.01□□□□□ -0.65
LIMA1-216ENST00000552909 UGGT1Q9NYU2 1555 aa11□□□□□ -0.65
LIMA1-216ENST00000552909 TET3O43151 1660 aa11□□□□□ -0.65
LIMA1-216ENST00000552909 NOS1P29475 1434 aa11□□□□□ -0.65
LIMA1-216ENST00000552909 TRIM52Q96A61 297 aa11□□□□□ -0.65
LIMA1-216ENST00000552909 SYNMO15061 1565 aa11□□□□□ -0.65
LIMA1-216ENST00000552909 E9PCH4 1651 aa10.99□□□□□ -0.65
LIMA1-216ENST00000552909 THEMISQ8N1K5 641 aaPredicted RBP10.99□□□□□ -0.65
LIMA1-216ENST00000552909 SUPT16HQ9Y5B9 1047 aaKnown RBP10.99□□□□□ -0.65
LIMA1-216ENST00000552909 TSHZ2Q9NRE2 1034 aa10.98□□□□□ -0.65
LIMA1-216ENST00000552909 PLA2R1Q13018 1463 aa10.98□□□□□ -0.65
LIMA1-216ENST00000552909 RPRD2Q5VT52 1461 aaKnown RBP10.98□□□□□ -0.65
LIMA1-216ENST00000552909 PIK3C2BO00750 1634 aa10.97□□□□□ -0.65
LIMA1-216ENST00000552909 DMRT2Q9Y5R5 561 aa10.97□□□□□ -0.65
LIMA1-216ENST00000552909 UBR1Q8IWV7 1749 aa10.97□□□□□ -0.65
LIMA1-216ENST00000552909 PKD2Q13563 968 aa10.96□□□□□ -0.66
LIMA1-216ENST00000552909 ANKLE2Q86XL3 938 aa10.96□□□□□ -0.66
LIMA1-216ENST00000552909 SLC52A1Q9NWF4 448 aa10.96□□□□□ -0.66
LIMA1-216ENST00000552909 LTKP29376 864 aa10.95□□□□□ -0.66
LIMA1-216ENST00000552909 STAG3Q9UJ98 1225 aa10.95□□□□□ -0.66
LIMA1-216ENST00000552909 PTPRTO14522 1441 aa10.95□□□□□ -0.66
LIMA1-216ENST00000552909 SETD5Q9C0A6 1442 aa10.95□□□□□ -0.66
LIMA1-216ENST00000552909 FOXD1Q16676 465 aa10.94□□□□□ -0.66
LIMA1-216ENST00000552909 SLC4A1APQ9BWU0 796 aaKnown RBP10.94□□□□□ -0.66
LIMA1-216ENST00000552909 NEURL4Q96JN8 1562 aa10.94□□□□□ -0.66
LIMA1-216ENST00000552909 RAB3GAP2Q9H2M9 1393 aa10.93□□□□□ -0.66
LIMA1-216ENST00000552909 CHGAP10645 457 aaKnown RBP10.93□□□□□ -0.66
LIMA1-216ENST00000552909 TXNDC2Q86VQ3 553 aa10.93□□□□□ -0.66
LIMA1-216ENST00000552909 POLR1AO95602 1720 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-216ENST00000552909 MYO5BQ9ULV0 1848 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms