RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MLH3Q9UHC1 1453 aa17.43■□□□□ 0.38
VPS29-208ENST00000550267 SPATA31D1Q6ZQQ2 1576 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 TRAPPC8Q9Y2L5 1435 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 LTBP4Q8N2S1 1624 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 ESF1Q9H501 851 aaKnown RBP17.41■□□□□ 0.38
VPS29-208ENST00000550267 STAG3Q9UJ98 1225 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 AGLP35573 1532 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 LRRIQ1Q96JM4 1722 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 CDC42BPBQ9Y5S2 1711 aa17.41■□□□□ 0.38
VPS29-208ENST00000550267 ABCC1P33527 1531 aa17.39■□□□□ 0.37
VPS29-208ENST00000550267 CD44P16070 742 aaKnown RBP17.39■□□□□ 0.37
VPS29-208ENST00000550267 SPDYE4A6NLX3 237 aa17.38■□□□□ 0.37
VPS29-208ENST00000550267 PREX2Q70Z35 1606 aa17.38■□□□□ 0.37
VPS29-208ENST00000550267 SETD1BQ9UPS6 1966 aaKnown RBP17.38■□□□□ 0.37
VPS29-208ENST00000550267 NCOA1Q15788 1441 aa17.38■□□□□ 0.37
VPS29-208ENST00000550267 ITSN2Q9NZM3 1697 aa17.36■□□□□ 0.37
VPS29-208ENST00000550267 CNTLNQ9NXG0 1405 aa17.35■□□□□ 0.37
VPS29-208ENST00000550267 IQSEC2Q5JU85 1478 aa17.35■□□□□ 0.37
VPS29-208ENST00000550267 KIDINS220Q9ULH0 1771 aa17.34■□□□□ 0.37
VPS29-208ENST00000550267 CAMSAP1Q5T5Y3 1602 aa17.32■□□□□ 0.36
VPS29-208ENST00000550267 NPATQ14207 1427 aa17.3■□□□□ 0.36
VPS29-208ENST00000550267 NCKAP5LQ9HCH0 1330 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 SAMD9LQ8IVG5 1584 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 CLCN6P51797 869 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 CREBZFQ9NS37 354 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 MROH2AA6NES4 1674 aa17.29■□□□□ 0.36
VPS29-208ENST00000550267 ZMYM3Q14202 1370 aa17.28■□□□□ 0.36
VPS29-208ENST00000550267 CDC42BPAQ5VT25 1732 aa17.28■□□□□ 0.36
VPS29-208ENST00000550267 CASKIN1Q8WXD9 1431 aa17.28■□□□□ 0.36
VPS29-208ENST00000550267 ZNF335Q9H4Z2 1342 aaPredicted RBP17.27■□□□□ 0.36
VPS29-208ENST00000550267 ZNF777Q9ULD5 760 aaPredicted RBP17.27■□□□□ 0.36
VPS29-208ENST00000550267 SYCP2Q9BX26 1530 aa17.25■□□□□ 0.35
VPS29-208ENST00000550267 SUPT6HQ7KZ85 1726 aaKnown RBP17.24■□□□□ 0.35
VPS29-208ENST00000550267 SPAG9O60271 1321 aaKnown RBP17.24■□□□□ 0.35
VPS29-208ENST00000550267 UBAP1LF5GYI3 381 aa17.24■□□□□ 0.35
VPS29-208ENST00000550267 HNRNPMP52272 730 aaKnown RBP eCLIP17.24■□□□□ 0.35
VPS29-208ENST00000550267 CLTCQ00610 1675 aaKnown RBP17.23■□□□□ 0.35
VPS29-208ENST00000550267 MYO3AQ8NEV4 1616 aa17.22■□□□□ 0.35
VPS29-208ENST00000550267 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.35
VPS29-208ENST00000550267 ZNF142P52746 1687 aaPredicted RBP17.21■□□□□ 0.35
VPS29-208ENST00000550267 ATP7AQ04656 1500 aa17.21■□□□□ 0.34
VPS29-208ENST00000550267 PLA2R1Q13018 1463 aa17.2■□□□□ 0.34
VPS29-208ENST00000550267 PTPRKQ15262 1439 aa17.2■□□□□ 0.34
VPS29-208ENST00000550267 PLXNC1O60486 1568 aa17.19■□□□□ 0.34
VPS29-208ENST00000550267 CEP170BQ9Y4F5 1589 aaPredicted RBP17.19■□□□□ 0.34
VPS29-208ENST00000550267 A2MP01023 1474 aa17.19■□□□□ 0.34
VPS29-208ENST00000550267 TCOF1Q13428 1488 aaKnown RBP17.19■□□□□ 0.34
VPS29-208ENST00000550267 PKD2Q13563 968 aa17.19■□□□□ 0.34
VPS29-208ENST00000550267 INO80Q9ULG1 1556 aaPredicted RBP17.19■□□□□ 0.34
VPS29-208ENST00000550267 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
VPS29-208ENST00000550267 GGT6Q6P531 493 aa17.18■□□□□ 0.34
VPS29-208ENST00000550267 KIAA1107Q9UPP5 1409 aa17.16■□□□□ 0.34
VPS29-208ENST00000550267 LHX8Q68G74 356 aa17.15■□□□□ 0.34
VPS29-208ENST00000550267 ZNF579Q8NAF0 562 aaKnown RBP17.15■□□□□ 0.34
VPS29-208ENST00000550267 CFDP1Q9UEE9 299 aaPredicted RBP17.15■□□□□ 0.34
VPS29-208ENST00000550267 PLEKHH2Q8IVE3 1493 aa17.14■□□□□ 0.33
VPS29-208ENST00000550267 POTEIP0CG38 1075 aa17.14■□□□□ 0.33
VPS29-208ENST00000550267 ZRANB1Q9UGI0 708 aa17.13■□□□□ 0.33
VPS29-208ENST00000550267 CCNB3Q8WWL7 1395 aa17.12■□□□□ 0.33
VPS29-208ENST00000550267 A2ML1A8K2U0 1454 aa17.11■□□□□ 0.33
VPS29-208ENST00000550267 DNMT1P26358 1616 aaKnown RBP17.1■□□□□ 0.33
VPS29-208ENST00000550267 HSPA1LP34931 641 aa17.09■□□□□ 0.33
VPS29-208ENST00000550267 ADGBQ8N7X0 1667 aa17.09■□□□□ 0.33
VPS29-208ENST00000550267 ZNF644Q9H582 1327 aaPredicted RBP17.08■□□□□ 0.32
VPS29-208ENST00000550267 PIP4K2BP78356 416 aa17.08■□□□□ 0.32
VPS29-208ENST00000550267 MED1Q15648 1581 aaPredicted RBP17.07■□□□□ 0.32
VPS29-208ENST00000550267 MTUS2Q5JR59 1369 aa17.06■□□□□ 0.32
VPS29-208ENST00000550267 NEURL4Q96JN8 1562 aa17.06■□□□□ 0.32
VPS29-208ENST00000550267 FBXO31Q5XUX0 539 aaPredicted RBP17.05■□□□□ 0.32
VPS29-208ENST00000550267 MBD5Q9P267 1494 aa17.05■□□□□ 0.32
VPS29-208ENST00000550267 TNRQ92752 1358 aa17.04■□□□□ 0.32
VPS29-208ENST00000550267 TIAM1Q13009 1591 aa17.04■□□□□ 0.32
VPS29-208ENST00000550267 CPS1P31327 1500 aa17.04■□□□□ 0.32
VPS29-208ENST00000550267 SHANK2Q9UPX8 1470 aa17.04■□□□□ 0.32
VPS29-208ENST00000550267 POLR1AO95602 1720 aaPredicted RBP17.04■□□□□ 0.32
VPS29-208ENST00000550267 DHX29Q7Z478 1369 aaKnown RBP17.03■□□□□ 0.32
VPS29-208ENST00000550267 TOM1O60784 492 aa17.03■□□□□ 0.32
VPS29-208ENST00000550267 RTEL1-TNFRSF6BF6WH68 1400 aa17.03■□□□□ 0.32
VPS29-208ENST00000550267 DCBLD2Q96PD2 775 aa17.01■□□□□ 0.31
VPS29-208ENST00000550267 KIF3BO15066 747 aa17■□□□□ 0.31
VPS29-208ENST00000550267 KDM5DQ9BY66 1539 aa17■□□□□ 0.31
VPS29-208ENST00000550267 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17■□□□□ 0.31
VPS29-208ENST00000550267 PZPP20742 1482 aa16.99■□□□□ 0.31
VPS29-208ENST00000550267 MNX1P50219 401 aaPredicted RBP16.99■□□□□ 0.31
VPS29-208ENST00000550267 VWDEQ8N2E2 1590 aa16.98■□□□□ 0.31
VPS29-208ENST00000550267 PAK3O75914 559 aaPredicted RBP16.98■□□□□ 0.31
VPS29-208ENST00000550267 PROM2Q8N271 834 aa16.98■□□□□ 0.31
VPS29-208ENST00000550267 EHBP1L1Q8N3D4 1523 aa16.97■□□□□ 0.31
VPS29-208ENST00000550267 ANKLE2Q86XL3 938 aa16.97■□□□□ 0.31
VPS29-208ENST00000550267 ALKQ9UM73 1620 aa16.96■□□□□ 0.31
VPS29-208ENST00000550267 FAM135AQ9P2D6 1515 aa16.96■□□□□ 0.3
VPS29-208ENST00000550267 NPHP4O75161 1426 aaPredicted RBP16.96■□□□□ 0.3
VPS29-208ENST00000550267 WASHC2CQ9Y4E1 1318 aa16.96■□□□□ 0.3
VPS29-208ENST00000550267 THEMISQ8N1K5 641 aaPredicted RBP16.95■□□□□ 0.3
VPS29-208ENST00000550267 CEP162Q5TB80 1403 aa16.95■□□□□ 0.3
VPS29-208ENST00000550267 MIA2Q96PC5 1412 aa16.95■□□□□ 0.3
VPS29-208ENST00000550267 UGGT1Q9NYU2 1555 aa16.94■□□□□ 0.3
VPS29-208ENST00000550267 CCDC141Q6ZP82 1450 aa16.94■□□□□ 0.3
VPS29-208ENST00000550267 MED14O60244 1454 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms