RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	YY1	P25490	414 aa		11.95	□□□□□ -0.5
LDHA-223	ENST00000545215	NEURL4	Q96JN8	1562 aa		11.95	□□□□□ -0.5
LDHA-223	ENST00000545215	RERE	Q9P2R6	1566 aa		11.95	□□□□□ -0.5
LDHA-223	ENST00000545215	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.94	□□□□□ -0.5	1e-17	■■□□□ 13.5
LDHA-223	ENST00000545215	SPOCK2	Q92563	424 aa		11.93	□□□□□ -0.5
LDHA-223	ENST00000545215	MROH2A	A6NES4	1674 aa		11.92	□□□□□ -0.5
LDHA-223	ENST00000545215	LRP5	O75197	1615 aa		11.91	□□□□□ -0.5
LDHA-223	ENST00000545215	POLR1A	O95602	1720 aa	Predicted RBP	11.91	□□□□□ -0.5
LDHA-223	ENST00000545215	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.91	□□□□□ -0.5
LDHA-223	ENST00000545215	STAG3	Q9UJ98	1225 aa		11.89	□□□□□ -0.51
LDHA-223	ENST00000545215	DNMT1	P26358	1616 aa	Known RBP	11.89	□□□□□ -0.51
LDHA-223	ENST00000545215	STRCP1	A6NGW2	1772 aa		11.89	□□□□□ -0.51
LDHA-223	ENST00000545215	DIP2C	Q9Y2E4	1556 aa		11.89	□□□□□ -0.51
LDHA-223	ENST00000545215	JCAD	Q9P266	1359 aa		11.89	□□□□□ -0.51
LDHA-223	ENST00000545215	KLHL34	Q8N239	644 aa		11.88	□□□□□ -0.51
LDHA-223	ENST00000545215	ZNF692	Q9BU19	519 aa	Predicted RBP	11.88	□□□□□ -0.51
LDHA-223	ENST00000545215	SYNM	O15061	1565 aa		11.88	□□□□□ -0.51
LDHA-223	ENST00000545215	A2ML1	A8K2U0	1454 aa		11.88	□□□□□ -0.51
LDHA-223	ENST00000545215	ANKLE2	Q86XL3	938 aa		11.87	□□□□□ -0.51
LDHA-223	ENST00000545215	SENP3-EIF4A1	A0A087X0R7	540 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	NUTM2E	B1AL46	878 aa	Predicted RBP	11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	SSUH2	Q9Y2M2	353 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	RAPGEF6	Q8TEU7	1601 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	PLEKHD1	A6NEE1	506 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	SPDYE2B	A6NHP3	402 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	SPDYE6	P0CI01	402 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	SPDYE2	Q495Y8	402 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	MEX3C	Q5U5Q3	659 aa	Known RBP	11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	AFAP1	Q8N556	730 aa		11.86	□□□□□ -0.51
LDHA-223	ENST00000545215	MED14	O60244	1454 aa		11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	ZNF518A	Q6AHZ1	1483 aa		11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	CDK13	Q14004	1512 aa	Known RBP	11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	LRP6	O75581	1613 aa		11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	DSG3	P32926	999 aa		11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	VSIG10	Q8N0Z9	540 aa		11.85	□□□□□ -0.51
LDHA-223	ENST00000545215	RGS12	O14924	1447 aa		11.84	□□□□□ -0.51
LDHA-223	ENST00000545215	PLCH2	O75038	1416 aa		11.84	□□□□□ -0.51
LDHA-223	ENST00000545215	NPHP4	O75161	1426 aa	Predicted RBP	11.84	□□□□□ -0.51
LDHA-223	ENST00000545215	ECM2	O94769	699 aa	Predicted RBP	11.84	□□□□□ -0.51
LDHA-223	ENST00000545215	MYT1L	Q9UL68	1186 aa		11.84	□□□□□ -0.51
LDHA-223	ENST00000545215	KDM5C	P41229	1560 aa		11.83	□□□□□ -0.52
LDHA-223	ENST00000545215	SPATA31A6	Q5VVP1	1343 aa		11.82	□□□□□ -0.52
LDHA-223	ENST00000545215	ATAD2	Q6PL18	1390 aa		11.82	□□□□□ -0.52
LDHA-223	ENST00000545215	BBX	Q8WY36	941 aa	Predicted RBP	11.82	□□□□□ -0.52
LDHA-223	ENST00000545215	ROBO1	Q9Y6N7	1651 aa		11.81	□□□□□ -0.52
LDHA-223	ENST00000545215	ABCA6	Q8N139	1617 aa		11.81	□□□□□ -0.52
LDHA-223	ENST00000545215	CCDC125	Q86Z20	511 aa		11.81	□□□□□ -0.52
LDHA-223	ENST00000545215	EFCAB2	Q5VUJ9	269 aa		11.8	□□□□□ -0.52
LDHA-223	ENST00000545215	PLCD3	Q8N3E9	789 aa		11.79	□□□□□ -0.52
LDHA-223	ENST00000545215	BCAN	Q96GW7	911 aa		11.79	□□□□□ -0.52
LDHA-223	ENST00000545215	MLH3	Q9UHC1	1453 aa		11.79	□□□□□ -0.52
LDHA-223	ENST00000545215	DEPDC5	O75140	1603 aa		11.79	□□□□□ -0.52
LDHA-223	ENST00000545215	RBM6	P78332	1123 aa	Known RBP	11.78	□□□□□ -0.52
LDHA-223	ENST00000545215	XIRP1	Q702N8	1843 aa	Known RBP	11.78	□□□□□ -0.52
LDHA-223	ENST00000545215	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.78	□□□□□ -0.52
LDHA-223	ENST00000545215	PHLPP1	O60346	1717 aa		11.76	□□□□□ -0.53
LDHA-223	ENST00000545215	NUP153	P49790	1475 aa	Known RBP	11.75	□□□□□ -0.53
LDHA-223	ENST00000545215	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.75	□□□□□ -0.53
LDHA-223	ENST00000545215	IQGAP1	P46940	1657 aa		11.75	□□□□□ -0.53
LDHA-223	ENST00000545215	CLTC	Q00610	1675 aa	Known RBP	11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	CTTNBP2	Q8WZ74	1663 aa		11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	AFF2	P51816	1311 aa		11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	P3H3	Q8IVL6	736 aa		11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	QTRT2	Q9H974	415 aa	Known RBP	11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	FGD6	Q6ZV73	1430 aa		11.74	□□□□□ -0.53
LDHA-223	ENST00000545215	RGL2	O15211	777 aa		11.73	□□□□□ -0.53
LDHA-223	ENST00000545215	SLC34A2	O95436	690 aa		11.73	□□□□□ -0.53
LDHA-223	ENST00000545215	MIER1	Q8N108	512 aa		11.73	□□□□□ -0.53
LDHA-223	ENST00000545215	ABCC1	P33527	1531 aa		11.73	□□□□□ -0.53
LDHA-223	ENST00000545215	NHSL1	Q5SYE7	1610 aa		11.73	□□□□□ -0.53
LDHA-223	ENST00000545215	KDM5D	Q9BY66	1539 aa		11.72	□□□□□ -0.53
LDHA-223	ENST00000545215	C1QTNF8	P60827	252 aa		11.72	□□□□□ -0.53
LDHA-223	ENST00000545215	HRC	P23327	699 aa		11.7	□□□□□ -0.54
LDHA-223	ENST00000545215	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.7	□□□□□ -0.54
LDHA-223	ENST00000545215	KDM2A	Q9Y2K7	1162 aa		11.7	□□□□□ -0.54
LDHA-223	ENST00000545215	COL16A1	Q07092	1604 aa	Predicted RBP	11.7	□□□□□ -0.54
LDHA-223	ENST00000545215	LRRC9	Q6ZRR7	1453 aa		11.69	□□□□□ -0.54
LDHA-223	ENST00000545215	NGLY1	Q96IV0	654 aa		11.68	□□□□□ -0.54
LDHA-223	ENST00000545215	EP400	Q96L91	3159 aa		11.67	□□□□□ -0.54
LDHA-223	ENST00000545215	ITSN2	Q9NZM3	1697 aa		11.67	□□□□□ -0.54
LDHA-223	ENST00000545215	SLAIN2	Q9P270	581 aa		11.66	□□□□□ -0.54
LDHA-223	ENST00000545215	PCDH10	Q9P2E7	1040 aa		11.66	□□□□□ -0.54
LDHA-223	ENST00000545215	TNR	Q92752	1358 aa		11.66	□□□□□ -0.54
LDHA-223	ENST00000545215	NWD1	Q149M9	1564 aa		11.65	□□□□□ -0.54
LDHA-223	ENST00000545215	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.65	□□□□□ -0.54
LDHA-223	ENST00000545215	CFAP44	Q96MT7	982 aa		11.65	□□□□□ -0.54
LDHA-223	ENST00000545215	KIDINS220	Q9ULH0	1771 aa		11.65	□□□□□ -0.54
LDHA-223	ENST00000545215	SHPRH	Q149N8	1683 aa		11.65	□□□□□ -0.55
LDHA-223	ENST00000545215	TMEM94	Q12767	1356 aa		11.64	□□□□□ -0.55
LDHA-223	ENST00000545215	FAM135A	Q9P2D6	1515 aa		11.64	□□□□□ -0.55
LDHA-223	ENST00000545215	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.63	□□□□□ -0.55
LDHA-223	ENST00000545215	TAOK2	Q9UL54	1235 aa		11.63	□□□□□ -0.55
LDHA-223	ENST00000545215	ZC3H13	Q5T200	1668 aa	Known RBP	11.63	□□□□□ -0.55
LDHA-223	ENST00000545215	UGGT1	Q9NYU2	1555 aa		11.63	□□□□□ -0.55
LDHA-223	ENST00000545215	MYO5C	Q9NQX4	1742 aa		11.62	□□□□□ -0.55
LDHA-223	ENST00000545215	PSD	A5PKW4	1024 aa	Predicted RBP	11.61	□□□□□ -0.55

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