RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 ABCC5O15440 1437 aa18.23■□□□□ 0.51
HDAC4-216ENST00000544989 DAPK1P53355 1430 aa18.22■□□□□ 0.51
HDAC4-216ENST00000544989 DISP3Q9P2K9 1392 aa18.21■□□□□ 0.51
HDAC4-216ENST00000544989 DNMT1P26358 1616 aaKnown RBP18.21■□□□□ 0.51
HDAC4-216ENST00000544989 DUOX2Q9NRD8 1548 aa18.21■□□□□ 0.51
HDAC4-216ENST00000544989 EIF2AK4Q9P2K8 1649 aaKnown RBP18.2■□□□□ 0.5
HDAC4-216ENST00000544989 CROCC2H7BZ55 1655 aa18.19■□□□□ 0.5
HDAC4-216ENST00000544989 CLTCQ00610 1675 aaKnown RBP18.19■□□□□ 0.5
HDAC4-216ENST00000544989 DMRT2Q9Y5R5 561 aa18.19■□□□□ 0.5
HDAC4-216ENST00000544989 WASHC2CQ9Y4E1 1318 aa18.19■□□□□ 0.5
HDAC4-216ENST00000544989 KDM5DQ9BY66 1539 aa18.18■□□□□ 0.5
HDAC4-216ENST00000544989 ANKRD30AQ9BXX3 1397 aa18.18■□□□□ 0.5
HDAC4-216ENST00000544989 KIF15Q9NS87 1388 aa18.18■□□□□ 0.5
HDAC4-216ENST00000544989 ERBINQ96RT1 1412 aa18.17■□□□□ 0.5
HDAC4-216ENST00000544989 FAM50AQ14320 339 aaKnown RBP18.17■□□□□ 0.5
HDAC4-216ENST00000544989 RNF17Q9BXT8 1623 aaKnown RBP18.16■□□□□ 0.5
HDAC4-216ENST00000544989 PTPRTO14522 1441 aa18.15■□□□□ 0.5
HDAC4-216ENST00000544989 PTPRKQ15262 1439 aa18.15■□□□□ 0.5
HDAC4-216ENST00000544989 IQSEC2Q5JU85 1478 aa18.14■□□□□ 0.5
HDAC4-216ENST00000544989 RRP7BPQ9NSQ0 103 aa18.14■□□□□ 0.49
HDAC4-216ENST00000544989 SPATA31D1Q6ZQQ2 1576 aa18.13■□□□□ 0.49
HDAC4-216ENST00000544989 NCOA1Q15788 1441 aa18.12■□□□□ 0.49
HDAC4-216ENST00000544989 ADGRL2O95490 1459 aa18.12■□□□□ 0.49
HDAC4-216ENST00000544989 PZPP20742 1482 aa18.12■□□□□ 0.49
HDAC4-216ENST00000544989 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.495e-9■■■■■ 340.8
HDAC4-216ENST00000544989 LTBP4Q8N2S1 1624 aa18.11■□□□□ 0.49
HDAC4-216ENST00000544989 ZC3H13Q5T200 1668 aaKnown RBP18.11■□□□□ 0.49
HDAC4-216ENST00000544989 CHIC2Q9UKJ5 165 aa18.1■□□□□ 0.49
HDAC4-216ENST00000544989 KANK1Q14678 1352 aa18.08■□□□□ 0.49
HDAC4-216ENST00000544989 ABCC3O15438 1527 aa18.08■□□□□ 0.48
HDAC4-216ENST00000544989 TNRQ92752 1358 aa18.07■□□□□ 0.48
HDAC4-216ENST00000544989 PRDM15P57071 1507 aaPredicted RBP18.06■□□□□ 0.48
HDAC4-216ENST00000544989 ZNF142P52746 1687 aaPredicted RBP18.06■□□□□ 0.48
HDAC4-216ENST00000544989 MYO3AQ8NEV4 1616 aa18.05■□□□□ 0.48
HDAC4-216ENST00000544989 A2ML1A8K2U0 1454 aa18.05■□□□□ 0.48
HDAC4-216ENST00000544989 MROH1Q8NDA8 1641 aa18.05■□□□□ 0.48
HDAC4-216ENST00000544989 ROCK1Q13464 1354 aa18.04■□□□□ 0.48
HDAC4-216ENST00000544989 CEP170BQ9Y4F5 1589 aaPredicted RBP18.04■□□□□ 0.48
HDAC4-216ENST00000544989 NLRP1Q9C000 1473 aa18.03■□□□□ 0.48
HDAC4-216ENST00000544989 ARHGAP31Q2M1Z3 1444 aa18.03■□□□□ 0.48
HDAC4-216ENST00000544989 PLA2R1Q13018 1463 aa18.02■□□□□ 0.48
HDAC4-216ENST00000544989 DEPDC5O75140 1603 aa18.02■□□□□ 0.48
HDAC4-216ENST00000544989 PKD2Q13563 968 aa18.02■□□□□ 0.48
HDAC4-216ENST00000544989 FBXO31Q5XUX0 539 aaPredicted RBP18.02■□□□□ 0.48
HDAC4-216ENST00000544989 ANKRD50Q9ULJ7 1429 aa18.02■□□□□ 0.48
HDAC4-216ENST00000544989 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
HDAC4-216ENST00000544989 CAMSAP1Q5T5Y3 1602 aa18.01■□□□□ 0.47
HDAC4-216ENST00000544989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18■□□□□ 0.479e-7■■□□□ 12.4
HDAC4-216ENST00000544989 RRBP1Q9P2E9 1410 aaKnown RBP17.98■□□□□ 0.47
HDAC4-216ENST00000544989 LMTK2Q8IWU2 1503 aa17.98■□□□□ 0.47
HDAC4-216ENST00000544989 THEMISQ8N1K5 641 aaPredicted RBP17.98■□□□□ 0.47
HDAC4-216ENST00000544989 ERVK-7P63135 1459 aa17.98■□□□□ 0.47
HDAC4-216ENST00000544989 CEP152O94986 1710 aa17.98■□□□□ 0.47
HDAC4-216ENST00000544989 VWDEQ8N2E2 1590 aa17.96■□□□□ 0.47
HDAC4-216ENST00000544989 UGGT1Q9NYU2 1555 aa17.93■□□□□ 0.46
HDAC4-216ENST00000544989 ITGAEP38570 1179 aa17.93■□□□□ 0.46
HDAC4-216ENST00000544989 RPRD2Q5VT52 1461 aaKnown RBP17.91■□□□□ 0.46
HDAC4-216ENST00000544989 ANKLE2Q86XL3 938 aa17.91■□□□□ 0.46
HDAC4-216ENST00000544989 NCKAP5LQ9HCH0 1330 aa17.91■□□□□ 0.46
HDAC4-216ENST00000544989 EFCAB6Q5THR3 1501 aa17.89■□□□□ 0.45
HDAC4-216ENST00000544989 UNC13BO14795 1591 aa17.88■□□□□ 0.45
HDAC4-216ENST00000544989 CFAP65Q6ZU64 1925 aaKnown RBP17.86■□□□□ 0.45
HDAC4-216ENST00000544989 SLC52A1Q9NWF4 448 aa17.86■□□□□ 0.45
HDAC4-216ENST00000544989 TET3O43151 1660 aa17.85■□□□□ 0.45
HDAC4-216ENST00000544989 NOS1P29475 1434 aa17.85■□□□□ 0.45
HDAC4-216ENST00000544989 STAG3Q9UJ98 1225 aa17.84■□□□□ 0.45
HDAC4-216ENST00000544989 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
HDAC4-216ENST00000544989 NUP155O75694 1391 aa17.83■□□□□ 0.45
HDAC4-216ENST00000544989 MED14O60244 1454 aa17.82■□□□□ 0.44
HDAC4-216ENST00000544989 KDM5AP29375 1690 aaKnown RBP17.82■□□□□ 0.44
HDAC4-216ENST00000544989 GCC2Q8IWJ2 1684 aa17.82■□□□□ 0.44
HDAC4-216ENST00000544989 IQGAP3Q86VI3 1631 aa17.82■□□□□ 0.44
HDAC4-216ENST00000544989 UBR1Q8IWV7 1749 aa17.81■□□□□ 0.44
HDAC4-216ENST00000544989 EID1Q9Y6B2 187 aa17.81■□□□□ 0.44
HDAC4-216ENST00000544989 NPHP4O75161 1426 aaPredicted RBP17.81■□□□□ 0.44
HDAC4-216ENST00000544989 IDI1Q13907 227 aa17.8■□□□□ 0.44
HDAC4-216ENST00000544989 NEURL4Q96JN8 1562 aa17.79■□□□□ 0.44
HDAC4-216ENST00000544989 SLIT1O75093 1534 aa17.79■□□□□ 0.44
HDAC4-216ENST00000544989 HFM1A2PYH4 1435 aa17.79■□□□□ 0.44
HDAC4-216ENST00000544989 NAIPQ13075 1403 aa17.79■□□□□ 0.44
HDAC4-216ENST00000544989 ARHGAP23Q9P227 1491 aa17.78■□□□□ 0.44
HDAC4-216ENST00000544989 SYNMO15061 1565 aa17.78■□□□□ 0.44
HDAC4-216ENST00000544989 ZNF335Q9H4Z2 1342 aaPredicted RBP17.77■□□□□ 0.44
HDAC4-216ENST00000544989 SCAF11Q99590 1463 aaKnown RBP17.77■□□□□ 0.44
HDAC4-216ENST00000544989 PIK3C2BO00750 1634 aa17.77■□□□□ 0.44
HDAC4-216ENST00000544989 TMEM2Q9UHN6 1383 aa17.77■□□□□ 0.43
HDAC4-216ENST00000544989 UBAP1LF5GYI3 381 aa17.76■□□□□ 0.43
HDAC4-216ENST00000544989 TXNDC2Q86VQ3 553 aa17.76■□□□□ 0.43
HDAC4-216ENST00000544989 ACIN1Q9UKV3 1341 aaKnown RBP17.75■□□□□ 0.43
HDAC4-216ENST00000544989 HDGFP51858 240 aaKnown RBP17.75■□□□□ 0.43
HDAC4-216ENST00000544989 ADGRB3O60242 1522 aa17.75■□□□□ 0.43
HDAC4-216ENST00000544989 IQGAP1P46940 1657 aa17.74■□□□□ 0.43
HDAC4-216ENST00000544989 E9PCH4 1651 aa17.73■□□□□ 0.43
HDAC4-216ENST00000544989 CPS1P31327 1500 aa17.72■□□□□ 0.43
HDAC4-216ENST00000544989 MED1Q15648 1581 aaPredicted RBP17.72■□□□□ 0.43
HDAC4-216ENST00000544989 LTKP29376 864 aa17.71■□□□□ 0.43
HDAC4-216ENST00000544989 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.68■□□□□ 0.42
HDAC4-216ENST00000544989 TRIM52Q96A61 297 aa17.68■□□□□ 0.42
HDAC4-216ENST00000544989 PPP1R15AO75807 674 aaPredicted RBP17.65■□□□□ 0.42
HDAC4-216ENST00000544989 CHGAP10645 457 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms