RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 FAM135AQ9P2D6 1515 aa44.31■■■■■ 4.68
CCM2-219ENST00000544363 FOXD1Q16676 465 aa44.31■■■■■ 4.68
CCM2-219ENST00000544363 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.3■■■■■ 4.68
CCM2-219ENST00000544363 NEUROD1Q13562 356 aa44.29■■■■■ 4.68
CCM2-219ENST00000544363 PKD2Q13563 968 aa44.28■■■■■ 4.68
CCM2-219ENST00000544363 IQGAP3Q86VI3 1631 aa44.28■■■■■ 4.68
CCM2-219ENST00000544363 DIP2CQ9Y2E4 1556 aa44.27■■■■■ 4.68
CCM2-219ENST00000544363 TRHP20396 242 aaPredicted RBP44.26■■■■■ 4.68
CCM2-219ENST00000544363 DEPDC5O75140 1603 aa44.26■■■■■ 4.68
CCM2-219ENST00000544363 ANKRD30BQ9BXX2 1392 aa44.26■■■■■ 4.68
CCM2-219ENST00000544363 KIF3BO15066 747 aa44.24■■■■■ 4.67
CCM2-219ENST00000544363 COL17A1Q9UMD9 1497 aaPredicted RBP44.23■■■■■ 4.67
CCM2-219ENST00000544363 YEATS2Q9ULM3 1422 aa44.22■■■■■ 4.67
CCM2-219ENST00000544363 TIMELESSQ9UNS1 1208 aa44.2■■■■■ 4.67
CCM2-219ENST00000544363 BCORL1Q5H9F3 1711 aa44.13■■■■■ 4.65
CCM2-219ENST00000544363 PRDM15P57071 1507 aaPredicted RBP44.12■■■■■ 4.65
CCM2-219ENST00000544363 KANK1Q14678 1352 aa44.11■■■■■ 4.65
CCM2-219ENST00000544363 MROH1Q8NDA8 1641 aa44.11■■■■■ 4.65
CCM2-219ENST00000544363 RNF17Q9BXT8 1623 aaKnown RBP44.11■■■■■ 4.65
CCM2-219ENST00000544363 VWDEQ8N2E2 1590 aa44.1■■■■■ 4.65
CCM2-219ENST00000544363 ATP10AO60312 1499 aa44.06■■■■■ 4.64
CCM2-219ENST00000544363 TONSLQ96HA7 1378 aa44.05■■■■■ 4.64
CCM2-219ENST00000544363 RPRD2Q5VT52 1461 aaKnown RBP44.02■■■■■ 4.64
CCM2-219ENST00000544363 REREQ9P2R6 1566 aa43.99■■■■■ 4.63
CCM2-219ENST00000544363 TET3O43151 1660 aa43.97■■■■■ 4.63
CCM2-219ENST00000544363 ARHGEF40Q8TER5 1519 aa43.94■■■■■ 4.63
CCM2-219ENST00000544363 GGT6Q6P531 493 aa43.94■■■■■ 4.62
CCM2-219ENST00000544363 LMTK2Q8IWU2 1503 aa43.92■■■■■ 4.62
CCM2-219ENST00000544363 E9PCH4 1651 aa43.9■■■■■ 4.62
CCM2-219ENST00000544363 PPP1R15AO75807 674 aaPredicted RBP43.88■■■■■ 4.61
CCM2-219ENST00000544363 AGLP35573 1532 aa43.87■■■■■ 4.61
CCM2-219ENST00000544363 PLA2R1Q13018 1463 aa43.87■■■■■ 4.61
CCM2-219ENST00000544363 CEP152O94986 1710 aa43.84■■■■■ 4.61
CCM2-219ENST00000544363 EFCAB6Q5THR3 1501 aa43.81■■■■■ 4.6
CCM2-219ENST00000544363 ABCC3O15438 1527 aa43.79■■■■■ 4.6
CCM2-219ENST00000544363 CCDC144AA2RUR9 1427 aa43.79■■■■■ 4.6
CCM2-219ENST00000544363 WASHC2CQ9Y4E1 1318 aa43.78■■■■■ 4.6
CCM2-219ENST00000544363 L3MBTL2Q969R5 705 aa43.77■■■■■ 4.6
CCM2-219ENST00000544363 PTPRTO14522 1441 aa43.75■■■■■ 4.59
CCM2-219ENST00000544363 SIGLEC1Q9BZZ2 1709 aa43.73■■■■■ 4.59
CCM2-219ENST00000544363 SPHKAPQ2M3C7 1700 aa43.72■■■■■ 4.59
CCM2-219ENST00000544363 ZC3H13Q5T200 1668 aaKnown RBP43.71■■■■■ 4.59
CCM2-219ENST00000544363 TRPM2O94759 1503 aa43.7■■■■■ 4.59
CCM2-219ENST00000544363 CAMSAP1Q5T5Y3 1602 aa43.66■■■■■ 4.58
CCM2-219ENST00000544363 PPP6R1Q9UPN7 881 aa43.66■■■■■ 4.58
CCM2-219ENST00000544363 NPATQ14207 1427 aa43.63■■■■■ 4.58
CCM2-219ENST00000544363 ARHGAP31Q2M1Z3 1444 aa43.59■■■■■ 4.57
CCM2-219ENST00000544363 CLTCL1P53675 1640 aa43.53■■■■■ 4.56
CCM2-219ENST00000544363 ZNF316A6NFI3 1004 aaPredicted RBP43.51■■■■■ 4.56
CCM2-219ENST00000544363 MLECQ14165 292 aa43.5■■■■■ 4.55
CCM2-219ENST00000544363 ARID4BQ4LE39 1312 aaPredicted RBP43.49■■■■■ 4.55
CCM2-219ENST00000544363 CNTLNQ9NXG0 1405 aa43.48■■■■■ 4.55
CCM2-219ENST00000544363 SPATA31E1Q6ZUB1 1445 aa43.46■■■■■ 4.55
CCM2-219ENST00000544363 CFAP65Q6ZU64 1925 aaKnown RBP43.45■■■■■ 4.55
CCM2-219ENST00000544363 NOS1P29475 1434 aa43.45■■■■■ 4.55
CCM2-219ENST00000544363 RGL3Q3MIN7 710 aa43.43■■■■■ 4.54
CCM2-219ENST00000544363 CLTCQ00610 1675 aaKnown RBP43.43■■■■■ 4.54
CCM2-219ENST00000544363 NBPF8Q3BBV2 869 aa43.42■■■■■ 4.54
CCM2-219ENST00000544363 UGGT1Q9NYU2 1555 aa43.41■■■■■ 4.54
CCM2-219ENST00000544363 DCAF11Q8TEB1 546 aa43.4■■■■■ 4.54
CCM2-219ENST00000544363 UHRF1BP1Q6BDS2 1440 aa43.38■■■■■ 4.53
CCM2-219ENST00000544363 NEURL4Q96JN8 1562 aa43.38■■■■■ 4.53
CCM2-219ENST00000544363 ESF1Q9H501 851 aaKnown RBP43.33■■■■■ 4.53
CCM2-219ENST00000544363 KDM2AQ9Y2K7 1162 aa43.33■■■■■ 4.53
CCM2-219ENST00000544363 KIF1BO60333 1816 aa43.33■■■■■ 4.53
CCM2-219ENST00000544363 SYNMO15061 1565 aa43.32■■■■■ 4.53
CCM2-219ENST00000544363 PREX1Q8TCU6 1659 aa43.32■■■■■ 4.53
CCM2-219ENST00000544363 PIK3C2BO00750 1634 aa43.27■■■■■ 4.52
CCM2-219ENST00000544363 ZNF326Q5BKZ1 582 aaKnown RBP43.27■■■■■ 4.52
CCM2-219ENST00000544363 ERVK-7P63135 1459 aa43.26■■■■■ 4.52
CCM2-219ENST00000544363 FBXO31Q5XUX0 539 aaPredicted RBP43.23■■■■■ 4.51
CCM2-219ENST00000544363 ZMYM3Q14202 1370 aa43.22■■■■■ 4.51
CCM2-219ENST00000544363 ADGRB3O60242 1522 aa43.22■■■■■ 4.51
CCM2-219ENST00000544363 SLC52A1Q9NWF4 448 aa43.22■■■■■ 4.51
CCM2-219ENST00000544363 PRAG1Q86YV5 1406 aa43.21■■■■■ 4.51
CCM2-219ENST00000544363 STAC3Q96MF2 364 aa43.21■■■■■ 4.51
CCM2-219ENST00000544363 MROH2AA6NES4 1674 aa43.18■■■■■ 4.5
CCM2-219ENST00000544363 SPATA31D1Q6ZQQ2 1576 aa43.17■■■■■ 4.5
CCM2-219ENST00000544363 RALGAPBQ86X10 1494 aa43.16■■■■■ 4.5
CCM2-219ENST00000544363 IDI1Q13907 227 aa43.15■■■■■ 4.5
CCM2-219ENST00000544363 CHGAP10645 457 aaKnown RBP43.14■■■■■ 4.5
CCM2-219ENST00000544363 EIF4G2P78344 907 aaKnown RBP eCLIP43.08■■■■■ 4.49
CCM2-219ENST00000544363 TRPM1Q7Z4N2 1603 aa43.06■■■■■ 4.48
CCM2-219ENST00000544363 IFT172Q9UG01 1749 aa43.05■■■■■ 4.48
CCM2-219ENST00000544363 FER1L4A9Z1Z3 1794 aa43.05■■■■■ 4.48
CCM2-219ENST00000544363 MADDQ8WXG6 1647 aa43.04■■■■■ 4.48
CCM2-219ENST00000544363 RPGRIP1LQ68CZ1 1315 aa43.04■■■■■ 4.48
CCM2-219ENST00000544363 MYOM2P54296 1465 aa43.03■■■■■ 4.48
CCM2-219ENST00000544363 HSPA5P11021 654 aaKnown RBP43.02■■■■■ 4.48
CCM2-219ENST00000544363 HIRIP3Q9BW71 556 aaPredicted RBP43.01■■■■■ 4.48
CCM2-219ENST00000544363 TMEM131LA2VDJ0 1609 aa42.99■■■■■ 4.47
CCM2-219ENST00000544363 ROCK2O75116 1388 aaKnown RBP42.98■■■■■ 4.47
CCM2-219ENST00000544363 PPLO60437 1756 aa42.96■■■■■ 4.47
CCM2-219ENST00000544363 CARD11Q9BXL7 1154 aa42.96■■■■■ 4.47
CCM2-219ENST00000544363 TNRQ92752 1358 aa42.93■■■■■ 4.46
CCM2-219ENST00000544363 GPRASP1Q5JY77 1395 aa42.93■■■■■ 4.46
CCM2-219ENST00000544363 NRXN1Q9ULB1 1477 aa42.92■■■■■ 4.46
CCM2-219ENST00000544363 C3P01024 1663 aa42.91■■■■■ 4.46
CCM2-219ENST00000544363 ADGRF5Q8IZF2 1346 aa42.91■■■■■ 4.46
CCM2-219ENST00000544363 NBPF1Q3BBV0 1214 aa42.9■■■■■ 4.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms