RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CLIP1P30622 1438 aa7.98□□□□□ -1.13
LIMS1-214ENST00000542845 HNRNPMP52272 730 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIMS1-214ENST00000542845 ANKLE2Q86XL3 938 aa7.98□□□□□ -1.13
LIMS1-214ENST00000542845 ITSN2Q9NZM3 1697 aa7.98□□□□□ -1.13
LIMS1-214ENST00000542845 SETD1AO15047 1707 aaKnown RBP7.98□□□□□ -1.13
LIMS1-214ENST00000542845 DNMT1P26358 1616 aaKnown RBP7.97□□□□□ -1.13
LIMS1-214ENST00000542845 SPAG9O60271 1321 aaKnown RBP7.97□□□□□ -1.13
LIMS1-214ENST00000542845 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMS1-214ENST00000542845 FBXO31Q5XUX0 539 aaPredicted RBP7.96□□□□□ -1.14
LIMS1-214ENST00000542845 ALKQ9UM73 1620 aa7.96□□□□□ -1.14
LIMS1-214ENST00000542845 TROQ12816 1431 aaPredicted RBP7.95□□□□□ -1.14
LIMS1-214ENST00000542845 A2ML1A8K2U0 1454 aa7.95□□□□□ -1.14
LIMS1-214ENST00000542845 ABCC1P33527 1531 aa7.94□□□□□ -1.14
LIMS1-214ENST00000542845 NEURL4Q96JN8 1562 aa7.94□□□□□ -1.14
LIMS1-214ENST00000542845 UBTFP17480 764 aaKnown RBP7.94□□□□□ -1.14
LIMS1-214ENST00000542845 THEMISQ8N1K5 641 aaPredicted RBP7.94□□□□□ -1.14
LIMS1-214ENST00000542845 SAMD9LQ8IVG5 1584 aa7.93□□□□□ -1.14
LIMS1-214ENST00000542845 VWDEQ8N2E2 1590 aa7.93□□□□□ -1.14
LIMS1-214ENST00000542845 PREX2Q70Z35 1606 aa7.93□□□□□ -1.14
LIMS1-214ENST00000542845 NPHP4O75161 1426 aaPredicted RBP7.93□□□□□ -1.14
LIMS1-214ENST00000542845 LRRIQ1Q96JM4 1722 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 STRCP1A6NGW2 1772 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 AMER1Q5JTC6 1135 aaPredicted RBP7.92□□□□□ -1.14
LIMS1-214ENST00000542845 TRIM52Q96A61 297 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 TNRQ92752 1358 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 FMN1Q68DA7 1419 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 A2MP01023 1474 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 LRRC7Q96NW7 1537 aa7.92□□□□□ -1.14
LIMS1-214ENST00000542845 UPF1Q92900 1129 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMS1-214ENST00000542845 CDC42BPAQ5VT25 1732 aa7.91□□□□□ -1.14
LIMS1-214ENST00000542845 RNF17Q9BXT8 1623 aaKnown RBP7.9□□□□□ -1.14
LIMS1-214ENST00000542845 ATP7AQ04656 1500 aa7.9□□□□□ -1.14
LIMS1-214ENST00000542845 SYCP2Q9BX26 1530 aa7.9□□□□□ -1.14
LIMS1-214ENST00000542845 IQGAP1P46940 1657 aa7.89□□□□□ -1.15
LIMS1-214ENST00000542845 KIF3BO15066 747 aa7.89□□□□□ -1.15
LIMS1-214ENST00000542845 SLC24A1O60721 1099 aa7.89□□□□□ -1.15
LIMS1-214ENST00000542845 MYCNP04198 464 aaPredicted RBP7.89□□□□□ -1.15
LIMS1-214ENST00000542845 RTN4Q9NQC3 1192 aaKnown RBP7.89□□□□□ -1.15
LIMS1-214ENST00000542845 UGGT1Q9NYU2 1555 aa7.88□□□□□ -1.15
LIMS1-214ENST00000542845 WASHC2CQ9Y4E1 1318 aa7.88□□□□□ -1.15
LIMS1-214ENST00000542845 SLC4A2P04920 1241 aa7.88□□□□□ -1.15
LIMS1-214ENST00000542845 FAM135AQ9P2D6 1515 aa7.88□□□□□ -1.15
LIMS1-214ENST00000542845 FKBP8Q14318 412 aa7.87□□□□□ -1.15
LIMS1-214ENST00000542845 MEX3CQ5U5Q3 659 aaKnown RBP7.87□□□□□ -1.15
LIMS1-214ENST00000542845 RBM33Q96EV2 1170 aaKnown RBP7.87□□□□□ -1.15
LIMS1-214ENST00000542845 CFDP1Q9UEE9 299 aaPredicted RBP7.87□□□□□ -1.15
LIMS1-214ENST00000542845 ADGBQ8N7X0 1667 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 CFAP65Q6ZU64 1925 aaKnown RBP7.86□□□□□ -1.15
LIMS1-214ENST00000542845 PLXNC1O60486 1568 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 ABCB7O75027 752 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 XIRP1Q702N8 1843 aaKnown RBP7.86□□□□□ -1.15
LIMS1-214ENST00000542845 MED14O60244 1454 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 ARHGAP35Q9NRY4 1499 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 MIA2Q96PC5 1412 aa7.86□□□□□ -1.15
LIMS1-214ENST00000542845 DEPDC5O75140 1603 aa7.85□□□□□ -1.15
LIMS1-214ENST00000542845 SYNMO15061 1565 aa7.85□□□□□ -1.15
LIMS1-214ENST00000542845 INO80Q9ULG1 1556 aaPredicted RBP7.84□□□□□ -1.15
LIMS1-214ENST00000542845 ROBO1Q9Y6N7 1651 aa7.84□□□□□ -1.15
LIMS1-214ENST00000542845 FAM135BQ49AJ0 1406 aa7.84□□□□□ -1.15
LIMS1-214ENST00000542845 ZNF644Q9H582 1327 aaPredicted RBP7.83□□□□□ -1.16
LIMS1-214ENST00000542845 PZPP20742 1482 aa7.83□□□□□ -1.16
LIMS1-214ENST00000542845 TXNDC2Q86VQ3 553 aa7.83□□□□□ -1.16
LIMS1-214ENST00000542845 PROSER2Q86WR7 435 aaPredicted RBP7.83□□□□□ -1.16
LIMS1-214ENST00000542845 EEA1Q15075 1411 aa7.83□□□□□ -1.16
LIMS1-214ENST00000542845 PHLPP1O60346 1717 aa7.83□□□□□ -1.16
LIMS1-214ENST00000542845 CCNB3Q8WWL7 1395 aa7.83□□□□□ -1.16
LIMS1-214ENST00000542845 GPATCH8Q9UKJ3 1502 aaKnown RBP7.83□□□□□ -1.16
LIMS1-214ENST00000542845 NLRP1Q9C000 1473 aa7.82□□□□□ -1.16
LIMS1-214ENST00000542845 ATXN8OSP0DMR3 200 aa7.82□□□□□ -1.16
LIMS1-214ENST00000542845 RXRBP28702 533 aa7.82□□□□□ -1.16
LIMS1-214ENST00000542845 ZNF772Q68DY9 489 aaPredicted RBP7.82□□□□□ -1.16
LIMS1-214ENST00000542845 DHX29Q7Z478 1369 aaKnown RBP7.82□□□□□ -1.16
LIMS1-214ENST00000542845 CCDC18Q5T9S5 1454 aa7.81□□□□□ -1.16
LIMS1-214ENST00000542845 NUTM2BA6NNL0 878 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-214ENST00000542845 NUTM2EB1AL46 878 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-214ENST00000542845 LTKP29376 864 aa7.81□□□□□ -1.16
LIMS1-214ENST00000542845 NUTM2AQ8IVF1 878 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-214ENST00000542845 ZC3H13Q5T200 1668 aaKnown RBP7.81□□□□□ -1.16
LIMS1-214ENST00000542845 KDM5DQ9BY66 1539 aa7.81□□□□□ -1.16
LIMS1-214ENST00000542845 PLEKHH2Q8IVE3 1493 aa7.81□□□□□ -1.16
LIMS1-214ENST00000542845 NUTM2DQ5VT03 806 aaPredicted RBP7.8□□□□□ -1.16
LIMS1-214ENST00000542845 BCANQ96GW7 911 aa7.8□□□□□ -1.16
LIMS1-214ENST00000542845 EID1Q9Y6B2 187 aa7.8□□□□□ -1.16
LIMS1-214ENST00000542845 TMEM94Q12767 1356 aa7.8□□□□□ -1.16
LIMS1-214ENST00000542845 JCADQ9P266 1359 aa7.8□□□□□ -1.16
LIMS1-214ENST00000542845 KIAA1107Q9UPP5 1409 aa7.79□□□□□ -1.16
LIMS1-214ENST00000542845 SLC26A8Q96RN1 970 aa7.79□□□□□ -1.16
LIMS1-214ENST00000542845 SLAIN2Q9P270 581 aa7.79□□□□□ -1.16
LIMS1-214ENST00000542845 STAG3Q9UJ98 1225 aa7.79□□□□□ -1.16
LIMS1-214ENST00000542845 ZNF219Q9P2Y4 722 aaPredicted RBP7.78□□□□□ -1.16
LIMS1-214ENST00000542845 UBR1Q8IWV7 1749 aa7.78□□□□□ -1.16
LIMS1-214ENST00000542845 CASKIN1Q8WXD9 1431 aa7.78□□□□□ -1.16
LIMS1-214ENST00000542845 SCAF11Q99590 1463 aaKnown RBP7.77□□□□□ -1.17
LIMS1-214ENST00000542845 CHRDL2Q6WN34 429 aa7.77□□□□□ -1.17
LIMS1-214ENST00000542845 ZRANB1Q9UGI0 708 aa7.77□□□□□ -1.17
LIMS1-214ENST00000542845 KCNA6P17658 529 aa7.76□□□□□ -1.17
LIMS1-214ENST00000542845 LRP6O75581 1613 aa7.76□□□□□ -1.17
LIMS1-214ENST00000542845 RTEL1-TNFRSF6BF6WH68 1400 aa7.76□□□□□ -1.17
LIMS1-214ENST00000542845 MSH6P52701 1360 aa7.75□□□□□ -1.17
LIMS1-214ENST00000542845 MTUS2Q5JR59 1369 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms