RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 AEBP2Q6ZN18 517 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-214ENST00000542845 CHIC1Q5VXU3 224 aa12.69□□□□□ -0.38
LIMS1-214ENST00000542845 NISCHQ9Y2I1 1504 aa12.22□□□□□ -0.45
LIMS1-214ENST00000542845 SENP3Q9H4L4 574 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-214ENST00000542845 POTEDQ86YR6 584 aa11.63□□□□□ -0.55
LIMS1-214ENST00000542845 ABCC9O60706 1549 aa11.61□□□□□ -0.55
LIMS1-214ENST00000542845 PHF23Q9BUL5 403 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-214ENST00000542845 DNAJC5BQ9UF47 199 aa11.25□□□□□ -0.61
LIMS1-214ENST00000542845 CCDC180Q9P1Z9 1646 aa11.11□□□□□ -0.63
LIMS1-214ENST00000542845 FOXD1Q16676 465 aa10.95□□□□□ -0.66
LIMS1-214ENST00000542845 PABPN1Q86U42 306 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMS1-214ENST00000542845 RB1CC1Q8TDY2 1594 aa10.81□□□□□ -0.68
LIMS1-214ENST00000542845 DCAF8L2P0C7V8 631 aa10.74□□□□□ -0.69
LIMS1-214ENST00000542845 UNC13AQ9UPW8 1703 aa10.61□□□□□ -0.71
LIMS1-214ENST00000542845 NACADO15069 1562 aa10.6□□□□□ -0.71
LIMS1-214ENST00000542845 DNAJC5Q9H3Z4 198 aa10.59□□□□□ -0.71
LIMS1-214ENST00000542845 BICRAQ9NZM4 1560 aa10.49□□□□□ -0.73
LIMS1-214ENST00000542845 CECR2Q9BXF3 1484 aa10.47□□□□□ -0.73
LIMS1-214ENST00000542845 CC2D2AQ9P2K1 1620 aa10.43□□□□□ -0.74
LIMS1-214ENST00000542845 MSH5O43196 834 aa10.38□□□□□ -0.75
LIMS1-214ENST00000542845 EIF4G1Q04637 1599 aaKnown RBP10.28□□□□□ -0.76
LIMS1-214ENST00000542845 MYO15BQ96JP2 1530 aa10.23□□□□□ -0.77
LIMS1-214ENST00000542845 SCRIBQ14160 1630 aa10.2□□□□□ -0.78
LIMS1-214ENST00000542845 SHROOM4Q9ULL8 1493 aa10.19□□□□□ -0.78
LIMS1-214ENST00000542845 PIAS4Q8N2W9 510 aaPredicted RBP10.12□□□□□ -0.79
LIMS1-214ENST00000542845 TRIM41Q8WV44 630 aa10.1□□□□□ -0.79
LIMS1-214ENST00000542845 CUX2O14529 1486 aa10.07□□□□□ -0.8
LIMS1-214ENST00000542845 ERCC6Q03468 1493 aa10.06□□□□□ -0.8
LIMS1-214ENST00000542845 ZCCHC6Q5VYS8 1495 aaKnown RBP10.01□□□□□ -0.81
LIMS1-214ENST00000542845 DCAF1Q9Y4B6 1507 aa9.98□□□□□ -0.81
LIMS1-214ENST00000542845 PPP6R1Q9UPN7 881 aa9.92□□□□□ -0.82
LIMS1-214ENST00000542845 PLPPR3Q6T4P5 718 aa9.87□□□□□ -0.83
LIMS1-214ENST00000542845 ADRA2BP18089 450 aa9.86□□□□□ -0.83
LIMS1-214ENST00000542845 NESP48681 1621 aa9.85□□□□□ -0.83
LIMS1-214ENST00000542845 NCAPD3P42695 1498 aa9.79□□□□□ -0.84
LIMS1-214ENST00000542845 SMARCA2P51531 1590 aa9.76□□□□□ -0.85
LIMS1-214ENST00000542845 THOC2Q8NI27 1593 aaKnown RBP9.75□□□□□ -0.85
LIMS1-214ENST00000542845 ATAD2BQ9ULI0 1458 aa9.72□□□□□ -0.85
LIMS1-214ENST00000542845 KIF21AQ7Z4S6 1674 aa9.71□□□□□ -0.85
LIMS1-214ENST00000542845 HMGXB3Q12766 1538 aa9.66□□□□□ -0.86
LIMS1-214ENST00000542845 OSCARQ8IYS5 282 aa9.65□□□□□ -0.86
LIMS1-214ENST00000542845 LAMC3Q9Y6N6 1575 aa9.65□□□□□ -0.86
LIMS1-214ENST00000542845 BAZ1BQ9UIG0 1483 aaKnown RBP9.65□□□□□ -0.87
LIMS1-214ENST00000542845 PDS5BQ9NTI5 1447 aa9.64□□□□□ -0.87
LIMS1-214ENST00000542845 SMARCA4P51532 1647 aa9.63□□□□□ -0.87
LIMS1-214ENST00000542845 BAZ1AQ9NRL2 1556 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-214ENST00000542845 TRHP20396 242 aaPredicted RBP9.58□□□□□ -0.88
LIMS1-214ENST00000542845 MRC2Q9UBG0 1479 aa9.57□□□□□ -0.88
LIMS1-214ENST00000542845 RIMBP3CA6NJZ7 1639 aa9.54□□□□□ -0.88
LIMS1-214ENST00000542845 RIMBP3BA6NNM3 1639 aa9.54□□□□□ -0.88
LIMS1-214ENST00000542845 RIMBP3Q9UFD9 1639 aa9.54□□□□□ -0.88
LIMS1-214ENST00000542845 WDR62O43379 1518 aa9.51□□□□□ -0.89
LIMS1-214ENST00000542845 CADPSQ9ULU8 1353 aa9.51□□□□□ -0.89
LIMS1-214ENST00000542845 CYB5RLQ6IPT4 315 aa9.5□□□□□ -0.89
LIMS1-214ENST00000542845 CEP164Q9UPV0 1460 aa9.47□□□□□ -0.89
LIMS1-214ENST00000542845 PEG3Q9GZU2 1588 aa9.46□□□□□ -0.9
LIMS1-214ENST00000542845 MROH2BQ7Z745 1585 aa9.45□□□□□ -0.9
LIMS1-214ENST00000542845 ARHGEF11O15085 1522 aa9.44□□□□□ -0.9
LIMS1-214ENST00000542845 FANCD2Q9BXW9 1451 aa9.42□□□□□ -0.9
LIMS1-214ENST00000542845 URB2Q14146 1524 aaKnown RBP9.36□□□□□ -0.91
LIMS1-214ENST00000542845 FBLN2P98095 1184 aa9.36□□□□□ -0.91
LIMS1-214ENST00000542845 WIZO95785 1651 aa9.36□□□□□ -0.91
LIMS1-214ENST00000542845 ZNF608Q9ULD9 1512 aaPredicted RBP9.34□□□□□ -0.91
LIMS1-214ENST00000542845 ARAP1Q96P48 1450 aa9.32□□□□□ -0.92
LIMS1-214ENST00000542845 CFTRP13569 1480 aa9.29□□□□□ -0.92
LIMS1-214ENST00000542845 CHD1O14646 1710 aa9.29□□□□□ -0.92
LIMS1-214ENST00000542845 IFT140Q96RY7 1462 aa9.27□□□□□ -0.93
LIMS1-214ENST00000542845 EIF4G3O43432 1585 aaKnown RBP9.24□□□□□ -0.93
LIMS1-214ENST00000542845 AQRO60306 1485 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMS1-214ENST00000542845 CACNB1Q02641 598 aaPredicted RBP9.21□□□□□ -0.94
LIMS1-214ENST00000542845 RSF1Q96T23 1441 aaPredicted RBP9.21□□□□□ -0.94
LIMS1-214ENST00000542845 MAPK8IP2Q13387 824 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-214ENST00000542845 PRDM2Q13029 1718 aa9.19□□□□□ -0.94
LIMS1-214ENST00000542845 DMRT2Q9Y5R5 561 aa9.19□□□□□ -0.94
LIMS1-214ENST00000542845 TOPBP1Q92547 1522 aa9.19□□□□□ -0.94
LIMS1-214ENST00000542845 ILDR1Q86SU0 546 aaPredicted RBP9.18□□□□□ -0.94
LIMS1-214ENST00000542845 CHMP7Q8WUX9 453 aaPredicted RBP9.16□□□□□ -0.94
LIMS1-214ENST00000542845 TOP2AP11388 1531 aaKnown RBP9.13□□□□□ -0.95
LIMS1-214ENST00000542845 TARBP1Q13395 1621 aaKnown RBP9.13□□□□□ -0.95
LIMS1-214ENST00000542845 TDRD9Q8NDG6 1382 aaKnown RBP9.12□□□□□ -0.95
LIMS1-214ENST00000542845 ABCC8Q09428 1581 aa9.12□□□□□ -0.95
LIMS1-214ENST00000542845 DNMBPQ6XZF7 1577 aa9.11□□□□□ -0.95
LIMS1-214ENST00000542845 RAD54L2Q9Y4B4 1467 aa9.09□□□□□ -0.95
LIMS1-214ENST00000542845 SYNJ1O43426 1573 aa9.09□□□□□ -0.95
LIMS1-214ENST00000542845 CLASP1Q7Z460 1538 aa9.09□□□□□ -0.95
LIMS1-214ENST00000542845 CCDC88BA6NC98 1476 aa9.08□□□□□ -0.96
LIMS1-214ENST00000542845 SNAPC4Q5SXM2 1469 aa9.08□□□□□ -0.96
LIMS1-214ENST00000542845 EHMT2Q96KQ7 1210 aa9.08□□□□□ -0.96
LIMS1-214ENST00000542845 GAPVD1Q14C86 1478 aa9.08□□□□□ -0.96
LIMS1-214ENST00000542845 POLA1P09884 1462 aaPredicted RBP9.07□□□□□ -0.96
LIMS1-214ENST00000542845 SOGA1O94964 1423 aa9.06□□□□□ -0.96
LIMS1-214ENST00000542845 KCNA4P22459 653 aa9.05□□□□□ -0.96
LIMS1-214ENST00000542845 KDM4FA0A1W2PPD8 638 aa9.01□□□□□ -0.97
LIMS1-214ENST00000542845 SYNJ2O15056 1496 aa9□□□□□ -0.97
LIMS1-214ENST00000542845 MAGI1Q96QZ7 1491 aaPredicted RBP9□□□□□ -0.97
LIMS1-214ENST00000542845 KIF13AQ9H1H9 1805 aa9□□□□□ -0.97
LIMS1-214ENST00000542845 ERCC6L2Q5T890 1561 aa8.99□□□□□ -0.97
LIMS1-214ENST00000542845 GRIN2BQ13224 1484 aa8.99□□□□□ -0.97
LIMS1-214ENST00000542845 FGD5Q6ZNL6 1462 aa8.97□□□□□ -0.97
LIMS1-214ENST00000542845 FAM69CQ0P6D2 419 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms