RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 RNF17Q9BXT8 1623 aaKnown RBP16.5■□□□□ 0.23
HMGA2-209ENST00000539662 HSPA2P54652 639 aa16.5■□□□□ 0.23
HMGA2-209ENST00000539662 CNTLNQ9NXG0 1405 aa16.5■□□□□ 0.23
HMGA2-209ENST00000539662 EIF2AK4Q9P2K8 1649 aaKnown RBP16.49■□□□□ 0.23
HMGA2-209ENST00000539662 ITGAEP38570 1179 aa16.49■□□□□ 0.23
HMGA2-209ENST00000539662 ADGRL2O95490 1459 aa16.48■□□□□ 0.23
HMGA2-209ENST00000539662 PREX1Q8TCU6 1659 aa16.48■□□□□ 0.23
HMGA2-209ENST00000539662 ANKRD30AQ9BXX3 1397 aa16.47■□□□□ 0.23
HMGA2-209ENST00000539662 CEP152O94986 1710 aa16.46■□□□□ 0.23
HMGA2-209ENST00000539662 RRBP1Q9P2E9 1410 aaKnown RBP16.45■□□□□ 0.22
HMGA2-209ENST00000539662 KDM5DQ9BY66 1539 aa16.45■□□□□ 0.22
HMGA2-209ENST00000539662 FBXO31Q5XUX0 539 aaPredicted RBP16.45■□□□□ 0.22
HMGA2-209ENST00000539662 ABCC3O15438 1527 aa16.45■□□□□ 0.22
HMGA2-209ENST00000539662 ERBINQ96RT1 1412 aa16.45■□□□□ 0.22
HMGA2-209ENST00000539662 WASHC2CQ9Y4E1 1318 aa16.45■□□□□ 0.22
HMGA2-209ENST00000539662 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
HMGA2-209ENST00000539662 DEPDC5O75140 1603 aa16.43■□□□□ 0.22
HMGA2-209ENST00000539662 SETD1BQ9UPS6 1966 aaKnown RBP16.43■□□□□ 0.22
HMGA2-209ENST00000539662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.42■□□□□ 0.22
HMGA2-209ENST00000539662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.42■□□□□ 0.221e-6■□□□□ 10.3
HMGA2-209ENST00000539662 PRDM15P57071 1507 aaPredicted RBP16.41■□□□□ 0.22
HMGA2-209ENST00000539662 NPATQ14207 1427 aa16.4■□□□□ 0.22
HMGA2-209ENST00000539662 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
HMGA2-209ENST00000539662 MYO3AQ8NEV4 1616 aa16.4■□□□□ 0.22
HMGA2-209ENST00000539662 CFAP65Q6ZU64 1925 aaKnown RBP16.39■□□□□ 0.21
HMGA2-209ENST00000539662 CAMSAP1Q5T5Y3 1602 aa16.39■□□□□ 0.21
HMGA2-209ENST00000539662 PZPP20742 1482 aa16.39■□□□□ 0.21
HMGA2-209ENST00000539662 ZC3H13Q5T200 1668 aaKnown RBP16.39■□□□□ 0.21
HMGA2-209ENST00000539662 FAM135AQ9P2D6 1515 aa16.39■□□□□ 0.21
HMGA2-209ENST00000539662 ANKRD50Q9ULJ7 1429 aa16.38■□□□□ 0.21
HMGA2-209ENST00000539662 ROCK1Q13464 1354 aa16.38■□□□□ 0.21
HMGA2-209ENST00000539662 STRCQ7RTU9 1775 aa16.37■□□□□ 0.21
HMGA2-209ENST00000539662 VWDEQ8N2E2 1590 aa16.37■□□□□ 0.21
HMGA2-209ENST00000539662 CEP170BQ9Y4F5 1589 aaPredicted RBP16.34■□□□□ 0.21
HMGA2-209ENST00000539662 ZNF142P52746 1687 aaPredicted RBP16.34■□□□□ 0.21
HMGA2-209ENST00000539662 TNRQ92752 1358 aa16.33■□□□□ 0.2
HMGA2-209ENST00000539662 UNC13BO14795 1591 aa16.32■□□□□ 0.2
HMGA2-209ENST00000539662 ERVK-7P63135 1459 aa16.32■□□□□ 0.2
HMGA2-209ENST00000539662 SPATA31D1Q6ZQQ2 1576 aa16.32■□□□□ 0.2
HMGA2-209ENST00000539662 LMTK2Q8IWU2 1503 aa16.3■□□□□ 0.2
HMGA2-209ENST00000539662 A2ML1A8K2U0 1454 aa16.29■□□□□ 0.2
HMGA2-209ENST00000539662 KANK1Q14678 1352 aa16.29■□□□□ 0.2
HMGA2-209ENST00000539662 NAIPQ13075 1403 aa16.28■□□□□ 0.2
HMGA2-209ENST00000539662 ARHGAP31Q2M1Z3 1444 aa16.28■□□□□ 0.2
HMGA2-209ENST00000539662 EFCAB6Q5THR3 1501 aa16.28■□□□□ 0.2
HMGA2-209ENST00000539662 GCC2Q8IWJ2 1684 aa16.27■□□□□ 0.19
HMGA2-209ENST00000539662 NCKAP5LQ9HCH0 1330 aa16.26■□□□□ 0.19
HMGA2-209ENST00000539662 SYNMO15061 1565 aa16.26■□□□□ 0.19
HMGA2-209ENST00000539662 TET3O43151 1660 aa16.25■□□□□ 0.19
HMGA2-209ENST00000539662 IQGAP3Q86VI3 1631 aa16.25■□□□□ 0.19
HMGA2-209ENST00000539662 E9PCH4 1651 aa16.24■□□□□ 0.19
HMGA2-209ENST00000539662 NUP155O75694 1391 aa16.23■□□□□ 0.19
HMGA2-209ENST00000539662 NLRP1Q9C000 1473 aa16.22■□□□□ 0.19
HMGA2-209ENST00000539662 UGGT1Q9NYU2 1555 aa16.22■□□□□ 0.19
HMGA2-209ENST00000539662 PIK3C2BO00750 1634 aa16.22■□□□□ 0.19
HMGA2-209ENST00000539662 UBR1Q8IWV7 1749 aa16.22■□□□□ 0.19
HMGA2-209ENST00000539662 HFM1A2PYH4 1435 aa16.21■□□□□ 0.19
HMGA2-209ENST00000539662 NOS1P29475 1434 aa16.21■□□□□ 0.19
HMGA2-209ENST00000539662 PLA2R1Q13018 1463 aa16.2■□□□□ 0.18
HMGA2-209ENST00000539662 NEURL4Q96JN8 1562 aa16.19■□□□□ 0.18
HMGA2-209ENST00000539662 IDI1Q13907 227 aa16.19■□□□□ 0.18
HMGA2-209ENST00000539662 POLR1AO95602 1720 aaPredicted RBP16.17■□□□□ 0.18
HMGA2-209ENST00000539662 PTPRTO14522 1441 aa16.17■□□□□ 0.18
HMGA2-209ENST00000539662 RPRD2Q5VT52 1461 aaKnown RBP16.16■□□□□ 0.18
HMGA2-209ENST00000539662 MYO5BQ9ULV0 1848 aa16.15■□□□□ 0.18
HMGA2-209ENST00000539662 THEMISQ8N1K5 641 aaPredicted RBP16.15■□□□□ 0.18
HMGA2-209ENST00000539662 PKD2Q13563 968 aa16.14■□□□□ 0.17
HMGA2-209ENST00000539662 DMRT2Q9Y5R5 561 aa16.14■□□□□ 0.17
HMGA2-209ENST00000539662 LTKP29376 864 aa16.13■□□□□ 0.17
HMGA2-209ENST00000539662 TRIM52Q96A61 297 aa16.13■□□□□ 0.17
HMGA2-209ENST00000539662 ARHGAP23Q9P227 1491 aa16.11■□□□□ 0.17
HMGA2-209ENST00000539662 ANKLE2Q86XL3 938 aa16.11■□□□□ 0.17
HMGA2-209ENST00000539662 LTBP4Q8N2S1 1624 aa16.11■□□□□ 0.17
HMGA2-209ENST00000539662 ADGRB3O60242 1522 aa16.1■□□□□ 0.17
HMGA2-209ENST00000539662 SLIT1O75093 1534 aa16.1■□□□□ 0.17
HMGA2-209ENST00000539662 ZNF335Q9H4Z2 1342 aaPredicted RBP16.1■□□□□ 0.17
HMGA2-209ENST00000539662 SPHKAPQ2M3C7 1700 aa16.1■□□□□ 0.17
HMGA2-209ENST00000539662 TMEM131LA2VDJ0 1609 aa16.09■□□□□ 0.17
HMGA2-209ENST00000539662 KDM5AP29375 1690 aaKnown RBP16.09■□□□□ 0.17
HMGA2-209ENST00000539662 SLC52A1Q9NWF4 448 aa16.09■□□□□ 0.17
HMGA2-209ENST00000539662 NPHP4O75161 1426 aaPredicted RBP16.09■□□□□ 0.17
HMGA2-209ENST00000539662 MED14O60244 1454 aa16.09■□□□□ 0.17
HMGA2-209ENST00000539662 FOXD1Q16676 465 aa16.08■□□□□ 0.16
HMGA2-209ENST00000539662 STAG3Q9UJ98 1225 aa16.08■□□□□ 0.16
HMGA2-209ENST00000539662 TMEM2Q9UHN6 1383 aa16.08■□□□□ 0.16
HMGA2-209ENST00000539662 SETD5Q9C0A6 1442 aa16.08■□□□□ 0.16
HMGA2-209ENST00000539662 IQGAP1P46940 1657 aa16.08■□□□□ 0.16
HMGA2-209ENST00000539662 TXNDC2Q86VQ3 553 aa16.07■□□□□ 0.16
HMGA2-209ENST00000539662 SENP3Q9H4L4 574 aaPredicted RBP16.07■□□□□ 0.16
HMGA2-209ENST00000539662 CLTCL1P53675 1640 aa16.06■□□□□ 0.16
HMGA2-209ENST00000539662 SCAF11Q99590 1463 aaKnown RBP16.06■□□□□ 0.16
HMGA2-209ENST00000539662 CERKQ8TCT0 537 aa16.06■□□□□ 0.16
HMGA2-209ENST00000539662 RAB3GAP2Q9H2M9 1393 aa16.05■□□□□ 0.16
HMGA2-209ENST00000539662 CHGAP10645 457 aaKnown RBP16.05■□□□□ 0.16
HMGA2-209ENST00000539662 ILDR1Q86SU0 546 aaPredicted RBP16.05■□□□□ 0.16
HMGA2-209ENST00000539662 SLC4A1APQ9BWU0 796 aaKnown RBP16.05■□□□□ 0.16
HMGA2-209ENST00000539662 STRCP1A6NGW2 1772 aa16.04■□□□□ 0.16
HMGA2-209ENST00000539662 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
HMGA2-209ENST00000539662 ZFYVE9O95405 1425 aa16.02■□□□□ 0.16
HMGA2-209ENST00000539662 MPHOSPH9Q99550 1183 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms