RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 PPP4R2Q9NY27 417 aa17.13■□□□□ 0.33
SFSWAP-208ENST00000539506 CARD11Q9BXL7 1154 aa17.13■□□□□ 0.33
SFSWAP-208ENST00000539506 FANCIQ9NVI1 1328 aa17.13■□□□□ 0.33
SFSWAP-208ENST00000539506 ZBED9Q6R2W3 1325 aa17.12■□□□□ 0.33
SFSWAP-208ENST00000539506 ARHGEF12Q9NZN5 1544 aa17.12■□□□□ 0.33
SFSWAP-208ENST00000539506 FAM135AQ9P2D6 1515 aa17.12■□□□□ 0.33
SFSWAP-208ENST00000539506 SYCP2Q9BX26 1530 aa17.11■□□□□ 0.33
SFSWAP-208ENST00000539506 ST20-MTHFSA0A0A6YYL1 179 aa17.11■□□□□ 0.33
SFSWAP-208ENST00000539506 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.11■□□□□ 0.336e-8■■■■□ 20.3
SFSWAP-208ENST00000539506 SHROOM2Q13796 1616 aa17.1■□□□□ 0.33
SFSWAP-208ENST00000539506 PLA2R1Q13018 1463 aa17.08■□□□□ 0.33
SFSWAP-208ENST00000539506 ARID4BQ4LE39 1312 aaPredicted RBP17.07■□□□□ 0.32
SFSWAP-208ENST00000539506 ARHGAP5Q13017 1502 aa17.07■□□□□ 0.32
SFSWAP-208ENST00000539506 SALL2Q9Y467 1007 aaPredicted RBP17.06■□□□□ 0.32
SFSWAP-208ENST00000539506 RSPH4AQ5TD94 716 aa17.05■□□□□ 0.32
SFSWAP-208ENST00000539506 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.05■□□□□ 0.327e-6■□□□□ 10.8
SFSWAP-208ENST00000539506 RGL3Q3MIN7 710 aa17.04■□□□□ 0.32
SFSWAP-208ENST00000539506 PLEKHH2Q8IVE3 1493 aa17.03■□□□□ 0.32
SFSWAP-208ENST00000539506 NBPF1Q3BBV0 1214 aa17.03■□□□□ 0.32
SFSWAP-208ENST00000539506 ABCC2Q92887 1545 aa17.03■□□□□ 0.32
SFSWAP-208ENST00000539506 NPM2Q86SE8 214 aaKnown RBP17.03■□□□□ 0.32
SFSWAP-208ENST00000539506 ROCK2O75116 1388 aaKnown RBP17.02■□□□□ 0.32
SFSWAP-208ENST00000539506 MAST1Q9Y2H9 1570 aa17.02■□□□□ 0.32
SFSWAP-208ENST00000539506 PRAG1Q86YV5 1406 aa17.02■□□□□ 0.31
SFSWAP-208ENST00000539506 PNISRQ8TF01 805 aaKnown RBP17.02■□□□□ 0.31
SFSWAP-208ENST00000539506 UNC13BO14795 1591 aa17.01■□□□□ 0.31
SFSWAP-208ENST00000539506 CCDC144AA2RUR9 1427 aa17.01■□□□□ 0.31
SFSWAP-208ENST00000539506 NOP58Q9Y2X3 529 aaKnown RBP17■□□□□ 0.31
SFSWAP-208ENST00000539506 TRPM1Q7Z4N2 1603 aa16.99■□□□□ 0.31
SFSWAP-208ENST00000539506 A2MP01023 1474 aa16.99■□□□□ 0.31
SFSWAP-208ENST00000539506 CCDC136Q96JN2 1154 aa16.98■□□□□ 0.31
SFSWAP-208ENST00000539506 MYO5CQ9NQX4 1742 aa16.98■□□□□ 0.31
SFSWAP-208ENST00000539506 ERICH6BQ5W0A0 696 aa16.96■□□□□ 0.31
SFSWAP-208ENST00000539506 RTN4Q9NQC3 1192 aaKnown RBP16.96■□□□□ 0.31
SFSWAP-208ENST00000539506 PLXNC1O60486 1568 aa16.96■□□□□ 0.31
SFSWAP-208ENST00000539506 SMG6Q86US8 1419 aaKnown RBP16.96■□□□□ 0.31
SFSWAP-208ENST00000539506 E9PCH4 1651 aa16.96■□□□□ 0.31
SFSWAP-208ENST00000539506 IQGAP3Q86VI3 1631 aa16.95■□□□□ 0.3
SFSWAP-208ENST00000539506 TMC1Q8TDI8 760 aa16.95■□□□□ 0.3
SFSWAP-208ENST00000539506 PLCH2O75038 1416 aa16.95■□□□□ 0.3
SFSWAP-208ENST00000539506 TRAPPC8Q9Y2L5 1435 aa16.94■□□□□ 0.3
SFSWAP-208ENST00000539506 ZCCHC11Q5TAX3 1644 aaKnown RBP16.93■□□□□ 0.3
SFSWAP-208ENST00000539506 GPRASP1Q5JY77 1395 aa16.93■□□□□ 0.3
SFSWAP-208ENST00000539506 MAGI2Q86UL8 1455 aa16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 TESK2Q96S53 571 aa16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 NUDCQ9Y266 331 aa16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 DUOX2Q9NRD8 1548 aa16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 LRPPRCP42704 1394 aaKnown RBP16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 PER1O15534 1290 aaPredicted RBP16.92■□□□□ 0.3
SFSWAP-208ENST00000539506 MYBBP1AQ9BQG0 1328 aaKnown RBP16.91■□□□□ 0.3
SFSWAP-208ENST00000539506 DISP3Q9P2K9 1392 aa16.91■□□□□ 0.3
SFSWAP-208ENST00000539506 CLASP1Q7Z460 1538 aa16.9■□□□□ 0.3
SFSWAP-208ENST00000539506 RNF123Q5XPI4 1314 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 SKAP1Q86WV1 359 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 ERBINQ96RT1 1412 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 ATP10AO60312 1499 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 EFCAB2Q5VUJ9 269 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 LAS1LQ9Y4W2 734 aaKnown RBP16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 ABCC1P33527 1531 aa16.89■□□□□ 0.29
SFSWAP-208ENST00000539506 BRD4O60885 1362 aaPredicted RBP16.88■□□□□ 0.29
SFSWAP-208ENST00000539506 RALBP1Q15311 655 aa16.88■□□□□ 0.29
SFSWAP-208ENST00000539506 AFAP1Q8N556 730 aa16.88■□□□□ 0.29
SFSWAP-208ENST00000539506 PRDM15P57071 1507 aaPredicted RBP16.88■□□□□ 0.29
SFSWAP-208ENST00000539506 PARD3Q8TEW0 1356 aa16.87■□□□□ 0.29
SFSWAP-208ENST00000539506 UHRF1BP1LA0JNW5 1464 aa16.87■□□□□ 0.29
SFSWAP-208ENST00000539506 ANO8Q9HCE9 1232 aaPredicted RBP16.86■□□□□ 0.29
SFSWAP-208ENST00000539506 ZBTB47Q9UFB7 747 aaPredicted RBP16.86■□□□□ 0.29
SFSWAP-208ENST00000539506 COL17A1Q9UMD9 1497 aaPredicted RBP16.86■□□□□ 0.29
SFSWAP-208ENST00000539506 ANP32AP39687 249 aaKnown RBP16.85■□□□□ 0.29
SFSWAP-208ENST00000539506 KTN1Q86UP2 1357 aaKnown RBP16.85■□□□□ 0.29
SFSWAP-208ENST00000539506 LAMC1P11047 1609 aa16.84■□□□□ 0.29
SFSWAP-208ENST00000539506 RTL5Q5HYW3 569 aaPredicted RBP16.83■□□□□ 0.28
SFSWAP-208ENST00000539506 IL27Q8NEV9 243 aa16.83■□□□□ 0.28
SFSWAP-208ENST00000539506 PANK3Q9H999 370 aa16.82■□□□□ 0.28
SFSWAP-208ENST00000539506 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
SFSWAP-208ENST00000539506 SPAG9O60271 1321 aaKnown RBP16.81■□□□□ 0.28
SFSWAP-208ENST00000539506 NLRP13Q86W25 1043 aa16.81■□□□□ 0.28
SFSWAP-208ENST00000539506 IPO9Q96P70 1041 aaKnown RBP16.81■□□□□ 0.28
SFSWAP-208ENST00000539506 ZFYVE16Q7Z3T8 1539 aa16.8■□□□□ 0.28
SFSWAP-208ENST00000539506 EIF2AK4Q9P2K8 1649 aaKnown RBP16.79■□□□□ 0.28
SFSWAP-208ENST00000539506 EXOC6Q8TAG9 804 aa16.79■□□□□ 0.28
SFSWAP-208ENST00000539506 RNF17Q9BXT8 1623 aaKnown RBP16.78■□□□□ 0.28
SFSWAP-208ENST00000539506 RTEL1-TNFRSF6BF6WH68 1400 aa16.76■□□□□ 0.27
SFSWAP-208ENST00000539506 MADDQ8WXG6 1647 aa16.76■□□□□ 0.27
SFSWAP-208ENST00000539506 PLIN1O60240 522 aa16.76■□□□□ 0.27
SFSWAP-208ENST00000539506 TMF1P82094 1093 aa16.76■□□□□ 0.27
SFSWAP-208ENST00000539506 PTPRTO14522 1441 aa16.75■□□□□ 0.27
SFSWAP-208ENST00000539506 CDCA7LQ96GN5 454 aa16.74■□□□□ 0.27
SFSWAP-208ENST00000539506 TRPM2O94759 1503 aa16.74■□□□□ 0.27
SFSWAP-208ENST00000539506 CLTCL1P53675 1640 aa16.74■□□□□ 0.27
SFSWAP-208ENST00000539506 WDR7Q9Y4E6 1490 aa16.73■□□□□ 0.27
SFSWAP-208ENST00000539506 ARAP3Q8WWN8 1544 aa16.73■□□□□ 0.27
SFSWAP-208ENST00000539506 WASHC2CQ9Y4E1 1318 aa16.72■□□□□ 0.27
SFSWAP-208ENST00000539506 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.72■□□□□ 0.27
SFSWAP-208ENST00000539506 DEPDC5O75140 1603 aa16.72■□□□□ 0.27
SFSWAP-208ENST00000539506 FANCAO15360 1455 aa16.72■□□□□ 0.27
SFSWAP-208ENST00000539506 SLC4A3P48751 1232 aa16.72■□□□□ 0.27
SFSWAP-208ENST00000539506 NEFMP07197 916 aa16.71■□□□□ 0.27
SFSWAP-208ENST00000539506 SPHKAPQ2M3C7 1700 aa16.7■□□□□ 0.26
SFSWAP-208ENST00000539506 IQGAP1P46940 1657 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms