RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	CLTC	Q00610	1675 aa	Known RBP	19.01	■□□□□ 0.63
CLTCL1-205	ENST00000538828	ERBIN	Q96RT1	1412 aa		19.01	■□□□□ 0.63
CLTCL1-205	ENST00000538828	KDM5D	Q9BY66	1539 aa		19.01	■□□□□ 0.63
CLTCL1-205	ENST00000538828	ANKRD30A	Q9BXX3	1397 aa		19	■□□□□ 0.63
CLTCL1-205	ENST00000538828	KIF15	Q9NS87	1388 aa		19	■□□□□ 0.63
CLTCL1-205	ENST00000538828	ADGRL2	O95490	1459 aa		19	■□□□□ 0.63
CLTCL1-205	ENST00000538828	PTPRK	Q15262	1439 aa		18.99	■□□□□ 0.63
CLTCL1-205	ENST00000538828	NCOA1	Q15788	1441 aa		18.98	■□□□□ 0.63
CLTCL1-205	ENST00000538828	PLPPR3	Q6T4P5	718 aa		18.97	■□□□□ 0.63
CLTCL1-205	ENST00000538828	ZC3H13	Q5T200	1668 aa	Known RBP	18.97	■□□□□ 0.63
CLTCL1-205	ENST00000538828	WASHC2C	Q9Y4E1	1318 aa		18.97	■□□□□ 0.63
CLTCL1-205	ENST00000538828	PZP	P20742	1482 aa		18.96	■□□□□ 0.63
CLTCL1-205	ENST00000538828	MROH1	Q8NDA8	1641 aa		18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	PRDM15	P57071	1507 aa	Predicted RBP	18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	HSPA2	P54652	639 aa		18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	FAM50A	Q14320	339 aa	Known RBP	18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	RRP7BP	Q9NSQ0	103 aa		18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	ZNF142	P52746	1687 aa	Predicted RBP	18.92	■□□□□ 0.62
CLTCL1-205	ENST00000538828	ABCC3	O15438	1527 aa		18.91	■□□□□ 0.62
CLTCL1-205	ENST00000538828	DMRT2	Q9Y5R5	561 aa		18.91	■□□□□ 0.62
CLTCL1-205	ENST00000538828	DEPDC5	O75140	1603 aa		18.91	■□□□□ 0.62
CLTCL1-205	ENST00000538828	ROCK1	Q13464	1354 aa		18.91	■□□□□ 0.62
CLTCL1-205	ENST00000538828	ARHGAP31	Q2M1Z3	1444 aa		18.89	■□□□□ 0.61
CLTCL1-205	ENST00000538828	MYO3A	Q8NEV4	1616 aa		18.88	■□□□□ 0.61
CLTCL1-205	ENST00000538828	PLA2R1	Q13018	1463 aa		18.87	■□□□□ 0.61
CLTCL1-205	ENST00000538828	RRBP1	Q9P2E9	1410 aa	Known RBP	18.86	■□□□□ 0.61
CLTCL1-205	ENST00000538828	KANK1	Q14678	1352 aa		18.86	■□□□□ 0.61
CLTCL1-205	ENST00000538828	TNR	Q92752	1358 aa		18.86	■□□□□ 0.61
CLTCL1-205	ENST00000538828	CHIC2	Q9UKJ5	165 aa		18.86	■□□□□ 0.61
CLTCL1-205	ENST00000538828	VWDE	Q8N2E2	1590 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	LMTK2	Q8IWU2	1503 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	A2ML1	A8K2U0	1454 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	NLRP1	Q9C000	1473 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	PTPRT	O14522	1441 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	ANKRD50	Q9ULJ7	1429 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	STRC	Q7RTU9	1775 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	SPATA31D1	Q6ZQQ2	1576 aa		18.85	■□□□□ 0.61
CLTCL1-205	ENST00000538828	CAMSAP1	Q5T5Y3	1602 aa		18.82	■□□□□ 0.6
CLTCL1-205	ENST00000538828	PKD2	Q13563	968 aa		18.81	■□□□□ 0.6
CLTCL1-205	ENST00000538828	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.81	■□□□□ 0.6
CLTCL1-205	ENST00000538828	CEP152	O94986	1710 aa		18.8	■□□□□ 0.6
CLTCL1-205	ENST00000538828	ERVK-7	P63135	1459 aa		18.8	■□□□□ 0.6
CLTCL1-205	ENST00000538828	THEMIS	Q8N1K5	641 aa	Predicted RBP	18.76	■□□□□ 0.59
CLTCL1-205	ENST00000538828	RPRD2	Q5VT52	1461 aa	Known RBP	18.76	■□□□□ 0.59
CLTCL1-205	ENST00000538828	UNC13B	O14795	1591 aa		18.74	■□□□□ 0.59
CLTCL1-205	ENST00000538828	PPARGC1B	Q86YN6	1023 aa	Known RBP	18.74	■□□□□ 0.59
CLTCL1-205	ENST00000538828	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	18.74	■□□□□ 0.59
CLTCL1-205	ENST00000538828	UGGT1	Q9NYU2	1555 aa		18.73	■□□□□ 0.59
CLTCL1-205	ENST00000538828	EFCAB6	Q5THR3	1501 aa		18.73	■□□□□ 0.59
CLTCL1-205	ENST00000538828	NOS1	P29475	1434 aa		18.71	■□□□□ 0.59
CLTCL1-205	ENST00000538828	TET3	O43151	1660 aa		18.7	■□□□□ 0.58
CLTCL1-205	ENST00000538828	KDM5A	P29375	1690 aa	Known RBP	18.7	■□□□□ 0.58
CLTCL1-205	ENST00000538828	CFAP65	Q6ZU64	1925 aa	Known RBP	18.7	■□□□□ 0.58
CLTCL1-205	ENST00000538828	ANKLE2	Q86XL3	938 aa		18.68	■□□□□ 0.58
CLTCL1-205	ENST00000538828	MED14	O60244	1454 aa		18.68	■□□□□ 0.58
CLTCL1-205	ENST00000538828	GCC2	Q8IWJ2	1684 aa		18.67	■□□□□ 0.58
CLTCL1-205	ENST00000538828	POLR1A	O95602	1720 aa	Predicted RBP	18.67	■□□□□ 0.58
CLTCL1-205	ENST00000538828	SLC52A1	Q9NWF4	448 aa		18.67	■□□□□ 0.58
CLTCL1-205	ENST00000538828	IQGAP3	Q86VI3	1631 aa		18.67	■□□□□ 0.58
CLTCL1-205	ENST00000538828	FBXO41	Q8TF61	875 aa		18.66	■□□□□ 0.58
CLTCL1-205	ENST00000538828	NCKAP5L	Q9HCH0	1330 aa		18.66	■□□□□ 0.58
CLTCL1-205	ENST00000538828	ITGAE	P38570	1179 aa		18.65	■□□□□ 0.58
CLTCL1-205	ENST00000538828	UBR1	Q8IWV7	1749 aa		18.65	■□□□□ 0.58
CLTCL1-205	ENST00000538828	SLIT1	O75093	1534 aa		18.64	■□□□□ 0.58
CLTCL1-205	ENST00000538828	CERK	Q8TCT0	537 aa		18.64	■□□□□ 0.57
CLTCL1-205	ENST00000538828	HFM1	A2PYH4	1435 aa		18.64	■□□□□ 0.57
CLTCL1-205	ENST00000538828	NAIP	Q13075	1403 aa		18.64	■□□□□ 0.57
CLTCL1-205	ENST00000538828	IQSEC2	Q5JU85	1478 aa		18.64	■□□□□ 0.57
CLTCL1-205	ENST00000538828	ARHGAP23	Q9P227	1491 aa		18.63	■□□□□ 0.57
CLTCL1-205	ENST00000538828	NEURL4	Q96JN8	1562 aa		18.63	■□□□□ 0.57
CLTCL1-205	ENST00000538828	NUP155	O75694	1391 aa		18.62	■□□□□ 0.57
CLTCL1-205	ENST00000538828	SYNM	O15061	1565 aa		18.62	■□□□□ 0.57
CLTCL1-205	ENST00000538828	LTBP4	Q8N2S1	1624 aa		18.62	■□□□□ 0.57
CLTCL1-205	ENST00000538828	ACIN1	Q9UKV3	1341 aa	Known RBP	18.6	■□□□□ 0.57
CLTCL1-205	ENST00000538828	IDI1	Q13907	227 aa		18.6	■□□□□ 0.57
CLTCL1-205	ENST00000538828	ILDR1	Q86SU0	546 aa	Predicted RBP	18.6	■□□□□ 0.57
CLTCL1-205	ENST00000538828	PIK3C2B	O00750	1634 aa		18.59	■□□□□ 0.57
CLTCL1-205	ENST00000538828	NPHP4	O75161	1426 aa	Predicted RBP	18.58	■□□□□ 0.57
CLTCL1-205	ENST00000538828	SCAF11	Q99590	1463 aa	Known RBP	18.58	■□□□□ 0.56
CLTCL1-205	ENST00000538828	TMEM2	Q9UHN6	1383 aa		18.57	■□□□□ 0.56
CLTCL1-205	ENST00000538828		E9PCH4	1651 aa		18.57	■□□□□ 0.56
CLTCL1-205	ENST00000538828	ADGRB3	O60242	1522 aa		18.55	■□□□□ 0.56
CLTCL1-205	ENST00000538828	STAG3	Q9UJ98	1225 aa		18.55	■□□□□ 0.56
CLTCL1-205	ENST00000538828	EID1	Q9Y6B2	187 aa		18.55	■□□□□ 0.56
CLTCL1-205	ENST00000538828	IQGAP1	P46940	1657 aa		18.54	■□□□□ 0.56
CLTCL1-205	ENST00000538828	CPS1	P31327	1500 aa		18.53	■□□□□ 0.56
CLTCL1-205	ENST00000538828	HDGF	P51858	240 aa	Known RBP	18.52	■□□□□ 0.56
CLTCL1-205	ENST00000538828	TXNDC2	Q86VQ3	553 aa		18.52	■□□□□ 0.56
CLTCL1-205	ENST00000538828	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	18.51	■□□□□ 0.55
CLTCL1-205	ENST00000538828	LTK	P29376	864 aa		18.51	■□□□□ 0.55
CLTCL1-205	ENST00000538828	TMEM131L	A2VDJ0	1609 aa		18.49	■□□□□ 0.55
CLTCL1-205	ENST00000538828	ZFYVE9	O95405	1425 aa		18.47	■□□□□ 0.55
CLTCL1-205	ENST00000538828	SPHKAP	Q2M3C7	1700 aa		18.46	■□□□□ 0.55
CLTCL1-205	ENST00000538828	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.46	■□□□□ 0.55
CLTCL1-205	ENST00000538828	TRPM2	O94759	1503 aa		18.44	■□□□□ 0.54
CLTCL1-205	ENST00000538828	PLEKHG1	Q9ULL1	1385 aa		18.42	■□□□□ 0.54
CLTCL1-205	ENST00000538828	MYO5B	Q9ULV0	1848 aa		18.42	■□□□□ 0.54
CLTCL1-205	ENST00000538828	RIMS2	Q9UQ26	1411 aa		18.41	■□□□□ 0.54
CLTCL1-205	ENST00000538828	TRIM52	Q96A61	297 aa		18.41	■□□□□ 0.54

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