RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, humanhuman

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-205ENST00000538828 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
CLTCL1-205ENST00000538828 CCDC180Q9P1Z9 1646 aa26.97■■□□□ 1.91
CLTCL1-205ENST00000538828 ABCC9O60706 1549 aa26.34■■□□□ 1.81
CLTCL1-205ENST00000538828 RB1CC1Q8TDY2 1594 aa25.42■■□□□ 1.66
CLTCL1-205ENST00000538828 NACADO15069 1562 aa25.4■■□□□ 1.66
CLTCL1-205ENST00000538828 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
CLTCL1-205ENST00000538828 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.61
CLTCL1-205ENST00000538828 DCAF1Q9Y4B6 1507 aa25.11■■□□□ 1.61
CLTCL1-205ENST00000538828 DCAF8L2P0C7V8 631 aa25.09■■□□□ 1.61
CLTCL1-205ENST00000538828 UNC13AQ9UPW8 1703 aa24.75■■□□□ 1.55
CLTCL1-205ENST00000538828 BICRAQ9NZM4 1560 aa24.6■■□□□ 1.53
CLTCL1-205ENST00000538828 PABPN1Q86U42 306 aaKnown RBP eCLIP24.55■■□□□ 1.52
CLTCL1-205ENST00000538828 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
CLTCL1-205ENST00000538828 SCRIBQ14160 1630 aa24.41■■□□□ 1.5
CLTCL1-205ENST00000538828 DNAJC5BQ9UF47 199 aa24.3■■□□□ 1.48
CLTCL1-205ENST00000538828 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
CLTCL1-205ENST00000538828 CC2D2AQ9P2K1 1620 aa23.88■■□□□ 1.41
CLTCL1-205ENST00000538828 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
CLTCL1-205ENST00000538828 BAZ1AQ9NRL2 1556 aaPredicted RBP23.44■■□□□ 1.34
CLTCL1-205ENST00000538828 NCAPD3P42695 1498 aa23.44■■□□□ 1.34
CLTCL1-205ENST00000538828 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
CLTCL1-205ENST00000538828 SMARCA2P51531 1590 aa23.38■■□□□ 1.33
CLTCL1-205ENST00000538828 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
CLTCL1-205ENST00000538828 PEG3Q9GZU2 1588 aa23.32■■□□□ 1.32
CLTCL1-205ENST00000538828 HMGXB3Q12766 1538 aa23.3■■□□□ 1.32
CLTCL1-205ENST00000538828 MROH2BQ7Z745 1585 aa23.2■■□□□ 1.3
CLTCL1-205ENST00000538828 BAZ1BQ9UIG0 1483 aaKnown RBP23.14■■□□□ 1.29
CLTCL1-205ENST00000538828 RSF1Q96T23 1441 aaPredicted RBP22.93■■□□□ 1.26
CLTCL1-205ENST00000538828 WIZO95785 1651 aa22.91■■□□□ 1.26
CLTCL1-205ENST00000538828 LAMC3Q9Y6N6 1575 aa22.82■■□□□ 1.24
CLTCL1-205ENST00000538828 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
CLTCL1-205ENST00000538828 ERCC6Q03468 1493 aa22.75■■□□□ 1.23
CLTCL1-205ENST00000538828 NESP48681 1621 aa22.74■■□□□ 1.23
CLTCL1-205ENST00000538828 CADPSQ9ULU8 1353 aa22.71■■□□□ 1.23
CLTCL1-205ENST00000538828 CUX2O14529 1486 aa22.69■■□□□ 1.22
CLTCL1-205ENST00000538828 PDS5BQ9NTI5 1447 aa22.67■■□□□ 1.22
CLTCL1-205ENST00000538828 CFTRP13569 1480 aa22.56■■□□□ 1.2
CLTCL1-205ENST00000538828 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
CLTCL1-205ENST00000538828 KIF21AQ7Z4S6 1674 aa22.49■■□□□ 1.19
CLTCL1-205ENST00000538828 CCDC88BA6NC98 1476 aa22.45■■□□□ 1.18
CLTCL1-205ENST00000538828 FANCD2Q9BXW9 1451 aa22.4■■□□□ 1.18
CLTCL1-205ENST00000538828 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
CLTCL1-205ENST00000538828 CEP164Q9UPV0 1460 aa22.4■■□□□ 1.18
CLTCL1-205ENST00000538828 PRDM2Q13029 1718 aa22.36■■□□□ 1.17
CLTCL1-205ENST00000538828 WDR62O43379 1518 aa22.36■■□□□ 1.17
CLTCL1-205ENST00000538828 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
CLTCL1-205ENST00000538828 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
CLTCL1-205ENST00000538828 DNAJC5Q9H3Z4 198 aa22.11■■□□□ 1.13
CLTCL1-205ENST00000538828 SUPT5HO00267 1087 aaKnown RBP22.09■■□□□ 1.13
CLTCL1-205ENST00000538828 TOPBP1Q92547 1522 aa22.03■■□□□ 1.12
CLTCL1-205ENST00000538828 DNMBPQ6XZF7 1577 aa22.01■■□□□ 1.11
CLTCL1-205ENST00000538828 IFT140Q96RY7 1462 aa21.97■■□□□ 1.11
CLTCL1-205ENST00000538828 POLA1P09884 1462 aaPredicted RBP21.83■■□□□ 1.09
CLTCL1-205ENST00000538828 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
CLTCL1-205ENST00000538828 CUX1P39880 1505 aa21.78■■□□□ 1.08
CLTCL1-205ENST00000538828 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
CLTCL1-205ENST00000538828 WDR97A6NE52 1622 aa21.77■■□□□ 1.07
CLTCL1-205ENST00000538828 SOGA1O94964 1423 aa21.74■■□□□ 1.07
CLTCL1-205ENST00000538828 FGD5Q6ZNL6 1462 aa21.73■■□□□ 1.07
CLTCL1-205ENST00000538828 EIF4G3O43432 1585 aaKnown RBP21.71■■□□□ 1.07
CLTCL1-205ENST00000538828 OSCARQ8IYS5 282 aa21.68■■□□□ 1.06
CLTCL1-205ENST00000538828 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
CLTCL1-205ENST00000538828 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.06
CLTCL1-205ENST00000538828 WRNQ14191 1432 aaPredicted RBP eCLIP21.63■■□□□ 1.05
CLTCL1-205ENST00000538828 TOP2BQ02880 1626 aa21.62■■□□□ 1.05
CLTCL1-205ENST00000538828 BIVM-ERCC5R4GMW8 1640 aa21.61■■□□□ 1.05
CLTCL1-205ENST00000538828 ABCA10Q8WWZ4 1543 aa21.6■■□□□ 1.05
CLTCL1-205ENST00000538828 TDRD9Q8NDG6 1382 aaKnown RBP21.58■■□□□ 1.04
CLTCL1-205ENST00000538828 GRIN2BQ13224 1484 aa21.54■■□□□ 1.04
CLTCL1-205ENST00000538828 MAGI1Q96QZ7 1491 aaPredicted RBP21.53■■□□□ 1.04
CLTCL1-205ENST00000538828 SYNJ1O43426 1573 aa21.52■■□□□ 1.04
CLTCL1-205ENST00000538828 GAPVD1Q14C86 1478 aa21.5■■□□□ 1.03
CLTCL1-205ENST00000538828 ABCA5Q8WWZ7 1642 aa21.48■■□□□ 1.03
CLTCL1-205ENST00000538828 SNAPC4Q5SXM2 1469 aa21.45■■□□□ 1.03
CLTCL1-205ENST00000538828 CHD1O14646 1710 aa21.44■■□□□ 1.02
CLTCL1-205ENST00000538828 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
CLTCL1-205ENST00000538828 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
CLTCL1-205ENST00000538828 CHMP7Q8WUX9 453 aaPredicted RBP21.37■■□□□ 1.01
CLTCL1-205ENST00000538828 ERICH3Q5RHP9 1530 aa21.35■■□□□ 1.01
CLTCL1-205ENST00000538828 FBLN2P98095 1184 aa21.35■■□□□ 1.01
CLTCL1-205ENST00000538828 ARHGEF11O15085 1522 aa21.29■■□□□ 1
CLTCL1-205ENST00000538828 CLASP1Q7Z460 1538 aa21.29■■□□□ 1
CLTCL1-205ENST00000538828 FHAD1B1AJZ9 1412 aa21.29■■□□□ 1
CLTCL1-205ENST00000538828 RIMBP3CA6NJZ7 1639 aa21.27■■□□□ 1
CLTCL1-205ENST00000538828 RIMBP3BA6NNM3 1639 aa21.27■■□□□ 1
CLTCL1-205ENST00000538828 RIMBP3Q9UFD9 1639 aa21.27■■□□□ 1
CLTCL1-205ENST00000538828 ADAMTS12P58397 1594 aa21.27■□□□□ 0.99
CLTCL1-205ENST00000538828 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
CLTCL1-205ENST00000538828 KIF27Q86VH2 1401 aa21.21■□□□□ 0.99
CLTCL1-205ENST00000538828 NUP160Q12769 1436 aa21.2■□□□□ 0.98
CLTCL1-205ENST00000538828 IGF1RP08069 1367 aa21.13■□□□□ 0.97
CLTCL1-205ENST00000538828 TRIM41Q8WV44 630 aa21.13■□□□□ 0.97
CLTCL1-205ENST00000538828 CUL7Q14999 1698 aa21.11■□□□□ 0.97
CLTCL1-205ENST00000538828 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
CLTCL1-205ENST00000538828 ARAP1Q96P48 1450 aa21.08■□□□□ 0.97
CLTCL1-205ENST00000538828 CYB5RLQ6IPT4 315 aa21.04■□□□□ 0.96
CLTCL1-205ENST00000538828 SHROOM2Q13796 1616 aa21.04■□□□□ 0.96
CLTCL1-205ENST00000538828 CARMIL1Q5VZK9 1371 aa21■□□□□ 0.95
CLTCL1-205ENST00000538828 KIAA0586Q9BVV6 1533 aa20.96■□□□□ 0.95
CLTCL1-205ENST00000538828 RUSC2Q8N2Y8 1516 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms