RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 LMTK3Q96Q04 1460 aa19.94■□□□□ 0.78
VPS28-216ENST00000533806 ERBINQ96RT1 1412 aa19.93■□□□□ 0.78
VPS28-216ENST00000533806 PLPPR3Q6T4P5 718 aa19.93■□□□□ 0.78
VPS28-216ENST00000533806 EIF2AK4Q9P2K8 1649 aaKnown RBP19.92■□□□□ 0.78
VPS28-216ENST00000533806 MROH2AA6NES4 1674 aa19.92■□□□□ 0.78
VPS28-216ENST00000533806 C3P01024 1663 aa19.92■□□□□ 0.78
VPS28-216ENST00000533806 FAM135AQ9P2D6 1515 aa19.92■□□□□ 0.78
VPS28-216ENST00000533806 RNF17Q9BXT8 1623 aaKnown RBP19.91■□□□□ 0.78
VPS28-216ENST00000533806 MROH1Q8NDA8 1641 aa19.9■□□□□ 0.78
VPS28-216ENST00000533806 CLTCQ00610 1675 aaKnown RBP19.89■□□□□ 0.77
VPS28-216ENST00000533806 ROCK1Q13464 1354 aa19.89■□□□□ 0.77
VPS28-216ENST00000533806 NPATQ14207 1427 aa19.89■□□□□ 0.77
VPS28-216ENST00000533806 KDM5DQ9BY66 1539 aa19.88■□□□□ 0.77
VPS28-216ENST00000533806 WASHC2CQ9Y4E1 1318 aa19.88■□□□□ 0.77
VPS28-216ENST00000533806 ABCC3O15438 1527 aa19.84■□□□□ 0.77
VPS28-216ENST00000533806 PRDM15P57071 1507 aaPredicted RBP19.84■□□□□ 0.77
VPS28-216ENST00000533806 ANKRD50Q9ULJ7 1429 aa19.84■□□□□ 0.77
VPS28-216ENST00000533806 SETD1BQ9UPS6 1966 aaKnown RBP19.83■□□□□ 0.76
VPS28-216ENST00000533806 PZPP20742 1482 aa19.82■□□□□ 0.76
VPS28-216ENST00000533806 FBXO31Q5XUX0 539 aaPredicted RBP19.82■□□□□ 0.76
VPS28-216ENST00000533806 DEPDC5O75140 1603 aa19.82■□□□□ 0.76
VPS28-216ENST00000533806 PREX1Q8TCU6 1659 aa19.81■□□□□ 0.76
VPS28-216ENST00000533806 ITGAEP38570 1179 aa19.81■□□□□ 0.76
VPS28-216ENST00000533806 HSPA2P54652 639 aa19.81■□□□□ 0.76
VPS28-216ENST00000533806 UHRF1BP1Q6BDS2 1440 aa19.81■□□□□ 0.76
VPS28-216ENST00000533806 VWDEQ8N2E2 1590 aa19.8■□□□□ 0.76
VPS28-216ENST00000533806 ZC3H13Q5T200 1668 aaKnown RBP19.78■□□□□ 0.76
VPS28-216ENST00000533806 ARHGAP31Q2M1Z3 1444 aa19.77■□□□□ 0.76
VPS28-216ENST00000533806 LMTK2Q8IWU2 1503 aa19.76■□□□□ 0.75
VPS28-216ENST00000533806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.76■□□□□ 0.759e-9■■■□□ 15.1
VPS28-216ENST00000533806 KANK1Q14678 1352 aa19.74■□□□□ 0.75
VPS28-216ENST00000533806 TNRQ92752 1358 aa19.73■□□□□ 0.75
VPS28-216ENST00000533806 SPATA31D1Q6ZQQ2 1576 aa19.71■□□□□ 0.75
VPS28-216ENST00000533806 CAMSAP1Q5T5Y3 1602 aa19.71■□□□□ 0.75
VPS28-216ENST00000533806 ERVK-7P63135 1459 aa19.71■□□□□ 0.75
VPS28-216ENST00000533806 CEP152O94986 1710 aa19.71■□□□□ 0.75
VPS28-216ENST00000533806 NAIPQ13075 1403 aa19.7■□□□□ 0.74
VPS28-216ENST00000533806 MYO3AQ8NEV4 1616 aa19.7■□□□□ 0.74
VPS28-216ENST00000533806 UNC13BO14795 1591 aa19.69■□□□□ 0.74
VPS28-216ENST00000533806 A2ML1A8K2U0 1454 aa19.68■□□□□ 0.74
VPS28-216ENST00000533806 CEP170BQ9Y4F5 1589 aaPredicted RBP19.68■□□□□ 0.74
VPS28-216ENST00000533806 ZNF142P52746 1687 aaPredicted RBP19.68■□□□□ 0.74
VPS28-216ENST00000533806 HFM1A2PYH4 1435 aa19.68■□□□□ 0.74
VPS28-216ENST00000533806 NLRP1Q9C000 1473 aa19.67■□□□□ 0.74
VPS28-216ENST00000533806 EFCAB6Q5THR3 1501 aa19.66■□□□□ 0.74
VPS28-216ENST00000533806 STRCQ7RTU9 1775 aa19.64■□□□□ 0.73
VPS28-216ENST00000533806 NOS1P29475 1434 aa19.63■□□□□ 0.73
VPS28-216ENST00000533806 PLA2R1Q13018 1463 aa19.62■□□□□ 0.73
VPS28-216ENST00000533806 NUP155O75694 1391 aa19.62■□□□□ 0.73
VPS28-216ENST00000533806 RPRD2Q5VT52 1461 aaKnown RBP19.61■□□□□ 0.73
VPS28-216ENST00000533806 IQGAP3Q86VI3 1631 aa19.6■□□□□ 0.73
VPS28-216ENST00000533806 TET3O43151 1660 aa19.59■□□□□ 0.73
VPS28-216ENST00000533806 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
VPS28-216ENST00000533806 PTPRTO14522 1441 aa19.59■□□□□ 0.73
VPS28-216ENST00000533806 GCC2Q8IWJ2 1684 aa19.59■□□□□ 0.73
VPS28-216ENST00000533806 THEMISQ8N1K5 641 aaPredicted RBP19.58■□□□□ 0.72
VPS28-216ENST00000533806 UGGT1Q9NYU2 1555 aa19.57■□□□□ 0.72
VPS28-216ENST00000533806 NCKAP5LQ9HCH0 1330 aa19.57■□□□□ 0.72
VPS28-216ENST00000533806 PKD2Q13563 968 aa19.57■□□□□ 0.72
VPS28-216ENST00000533806 IDI1Q13907 227 aa19.57■□□□□ 0.72
VPS28-216ENST00000533806 SYNMO15061 1565 aa19.57■□□□□ 0.72
VPS28-216ENST00000533806 SLC52A1Q9NWF4 448 aa19.54■□□□□ 0.72
VPS28-216ENST00000533806 CFAP65Q6ZU64 1925 aaKnown RBP19.53■□□□□ 0.72
VPS28-216ENST00000533806 E9PCH4 1651 aa19.52■□□□□ 0.71
VPS28-216ENST00000533806 ARHGAP23Q9P227 1491 aa19.5■□□□□ 0.71
VPS28-216ENST00000533806 ANKLE2Q86XL3 938 aa19.5■□□□□ 0.71
VPS28-216ENST00000533806 UBR1Q8IWV7 1749 aa19.5■□□□□ 0.71
VPS28-216ENST00000533806 PIK3C2BO00750 1634 aa19.49■□□□□ 0.71
VPS28-216ENST00000533806 NEURL4Q96JN8 1562 aa19.49■□□□□ 0.71
VPS28-216ENST00000533806 MED14O60244 1454 aa19.48■□□□□ 0.71
VPS28-216ENST00000533806 SLIT1O75093 1534 aa19.48■□□□□ 0.71
VPS28-216ENST00000533806 KDM5AP29375 1690 aaKnown RBP19.47■□□□□ 0.71
VPS28-216ENST00000533806 TMEM2Q9UHN6 1383 aa19.46■□□□□ 0.71
VPS28-216ENST00000533806 SETD5Q9C0A6 1442 aa19.46■□□□□ 0.71
VPS28-216ENST00000533806 LTKP29376 864 aa19.46■□□□□ 0.71
VPS28-216ENST00000533806 TRIM52Q96A61 297 aa19.46■□□□□ 0.71
VPS28-216ENST00000533806 ADGRB3O60242 1522 aa19.43■□□□□ 0.7
VPS28-216ENST00000533806 SLC4A1APQ9BWU0 796 aaKnown RBP19.42■□□□□ 0.7
VPS28-216ENST00000533806 ACIN1Q9UKV3 1341 aaKnown RBP19.42■□□□□ 0.7
VPS28-216ENST00000533806 NPHP4O75161 1426 aaPredicted RBP19.42■□□□□ 0.7
VPS28-216ENST00000533806 TXNDC2Q86VQ3 553 aa19.41■□□□□ 0.7
VPS28-216ENST00000533806 STAG3Q9UJ98 1225 aa19.41■□□□□ 0.7
VPS28-216ENST00000533806 SCAF11Q99590 1463 aaKnown RBP19.41■□□□□ 0.7
VPS28-216ENST00000533806 POLR1AO95602 1720 aaPredicted RBP19.4■□□□□ 0.7
VPS28-216ENST00000533806 RAB3GAP2Q9H2M9 1393 aa19.4■□□□□ 0.7
VPS28-216ENST00000533806 TMEM131LA2VDJ0 1609 aa19.4■□□□□ 0.7
VPS28-216ENST00000533806 LTBP4Q8N2S1 1624 aa19.4■□□□□ 0.7
VPS28-216ENST00000533806 HRCP23327 699 aa19.39■□□□□ 0.69
VPS28-216ENST00000533806 ZFYVE9O95405 1425 aa19.38■□□□□ 0.69
VPS28-216ENST00000533806 CERKQ8TCT0 537 aa19.38■□□□□ 0.69
VPS28-216ENST00000533806 MPHOSPH9Q99550 1183 aa19.38■□□□□ 0.69
VPS28-216ENST00000533806 ZNF335Q9H4Z2 1342 aaPredicted RBP19.38■□□□□ 0.69
VPS28-216ENST00000533806 EID1Q9Y6B2 187 aa19.38■□□□□ 0.69
VPS28-216ENST00000533806 TRPM2O94759 1503 aa19.36■□□□□ 0.69
VPS28-216ENST00000533806 SPHKAPQ2M3C7 1700 aa19.36■□□□□ 0.69
VPS28-216ENST00000533806 FOXD1Q16676 465 aa19.33■□□□□ 0.68
VPS28-216ENST00000533806 IQGAP1P46940 1657 aa19.33■□□□□ 0.68
VPS28-216ENST00000533806 RIMS2Q9UQ26 1411 aa19.33■□□□□ 0.68
VPS28-216ENST00000533806 CHGAP10645 457 aaKnown RBP19.31■□□□□ 0.68
VPS28-216ENST00000533806 CLTCL1P53675 1640 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms