RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.29□□□□□ -0.446e-7■■■■■ 139.2
VPS28-216ENST00000533806 SF3B1O75533 1304 aaKnown RBP eCLIP14.13□□□□□ -0.153e-6■■■■■ 56
VPS28-216ENST00000533806 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.262e-11■■■■■ 40.7
VPS28-216ENST00000533806 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■■■■ 37.9
VPS28-216ENST00000533806 AARSP49588 968 aaKnown RBP eCLIP14.09□□□□□ -0.151e-6■■■■■ 36.1
VPS28-216ENST00000533806 ZC3H11AO75152 810 aaKnown RBP eCLIP14.24□□□□□ -0.137e-6■■■■■ 33.7
VPS28-216ENST00000533806 SF3B4Q15427 424 aaKnown RBP eCLIP11.71□□□□□ -0.536e-8■■■■■ 27
VPS28-216ENST00000533806 RBFOX2O43251 390 aaKnown RBP eCLIP10.11□□□□□ -0.794e-8■■■■□ 26.4
VPS28-216ENST00000533806 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.91□□□□□ -0.182e-7■■■■□ 26
VPS28-216ENST00000533806 AATFQ9NY61 560 aaKnown RBP eCLIP15.78■□□□□ 0.126e-6■■■■□ 25.6
VPS28-216ENST00000533806 SF3A3Q12874 501 aaKnown RBP eCLIP11.66□□□□□ -0.543e-6■■■■□ 25.6
VPS28-216ENST00000533806 AQRO60306 1485 aaKnown RBP eCLIP22.72■■□□□ 1.237e-10■■■■□ 24.3
VPS28-216ENST00000533806 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.48■□□□□ 0.071e-7■■■■□ 24.2
VPS28-216ENST00000533806 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.71■□□□□ 0.112e-7■■■■□ 23.7
VPS28-216ENST00000533806 EFTUD2Q15029 972 aaKnown RBP eCLIP12.45□□□□□ -0.422e-7■■■■□ 23.3
VPS28-216ENST00000533806 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.69□□□□□ -0.064e-7■■■■□ 21.8
VPS28-216ENST00000533806 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.92□□□□□ -0.665e-7■■■□□ 19.1
VPS28-216ENST00000533806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.76■□□□□ 0.759e-9■■■□□ 15.1
VPS28-216ENST00000533806 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.84■□□□□ 0.937e-7■■□□□ 14.3
VPS28-216ENST00000533806 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.67□□□□□ -0.221e-6■■□□□ 14.1
VPS28-216ENST00000533806 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.17■□□□□ 0.023e-6■■□□□ 14.1
VPS28-216ENST00000533806 PABPC4Q13310 644 aaKnown RBP eCLIP15.46■□□□□ 0.078e-10■■□□□ 13.9
VPS28-216ENST00000533806 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.42□□□□□ -0.268e-7■■□□□ 13.6
VPS28-216ENST00000533806 ZRANB2O95218 330 aaKnown RBP eCLIP13.1□□□□□ -0.312e-7■■□□□ 13.6
VPS28-216ENST00000533806 RPS3P23396 243 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■■□□□ 13
VPS28-216ENST00000533806 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20■□□□□ 0.793e-6■■□□□ 12.6
VPS28-216ENST00000533806 DDX3XO00571 662 aaKnown RBP eCLIP13.45□□□□□ -0.266e-7■■□□□ 12.4
VPS28-216ENST00000533806 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.8■□□□□ 0.121e-8■■□□□ 11.9
VPS28-216ENST00000533806 FTOQ9C0B1 505 aaKnown RBP eCLIP14.59□□□□□ -0.071e-6■■□□□ 11.8
VPS28-216ENST00000533806 NCBP2P52298 156 aaKnown RBP eCLIP11.95□□□□□ -0.55e-6■■□□□ 11.5
VPS28-216ENST00000533806 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.46□□□□□ -0.254e-6■□□□□ 11.3
VPS28-216ENST00000533806 HNRNPKP61978 463 aaKnown RBP eCLIP12.97□□□□□ -0.335e-6■□□□□ 11.2
VPS28-216ENST00000533806 PPIGQ13427 754 aaKnown RBP eCLIP14.69□□□□□ -0.066e-8■□□□□ 10.8
VPS28-216ENST00000533806 YBX3P16989 372 aaKnown RBP eCLIP16.84■□□□□ 0.291e-7■□□□□ 9.8
VPS28-216ENST00000533806 PABPN1Q86U42 306 aaKnown RBP eCLIP25.77■■□□□ 1.726e-9■□□□□ 9.8
VPS28-216ENST00000533806 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.92□□□□□ -0.663e-6■□□□□ 9.1
VPS28-216ENST00000533806 XRCC6P12956 609 aaKnown RBP eCLIP14.52□□□□□ -0.097e-6■□□□□ 8.8
Retrieved 37 of 37 RNA–protein pairs in 8.2 ms