RNA–Protein interactions for RNA: ENST00000529866.5

COPB1-207, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 2

Gene COPB1, Length 729 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-207ENST00000529866 RTEL1-TNFRSF6BF6WH68 1400 aa16.91■□□□□ 0.3
COPB1-207ENST00000529866 DHX29Q7Z478 1369 aaKnown RBP16.9■□□□□ 0.3
COPB1-207ENST00000529866 ANKLE2Q86XL3 938 aa16.9■□□□□ 0.3
COPB1-207ENST00000529866 ADGBQ8N7X0 1667 aa16.9■□□□□ 0.3
COPB1-207ENST00000529866 PZPP20742 1482 aa16.89■□□□□ 0.29
COPB1-207ENST00000529866 FAM135AQ9P2D6 1515 aa16.89■□□□□ 0.29
COPB1-207ENST00000529866 MBD5Q9P267 1494 aa16.87■□□□□ 0.29
COPB1-207ENST00000529866 KDM5DQ9BY66 1539 aa16.87■□□□□ 0.29
COPB1-207ENST00000529866 KIF3BO15066 747 aa16.87■□□□□ 0.29
COPB1-207ENST00000529866 THEMISQ8N1K5 641 aaPredicted RBP16.87■□□□□ 0.29
COPB1-207ENST00000529866 ZNF644Q9H582 1327 aaPredicted RBP16.87■□□□□ 0.29
COPB1-207ENST00000529866 NEURL4Q96JN8 1562 aa16.86■□□□□ 0.29
COPB1-207ENST00000529866 FBXO31Q5XUX0 539 aaPredicted RBP16.86■□□□□ 0.29
COPB1-207ENST00000529866 WASHC2CQ9Y4E1 1318 aa16.86■□□□□ 0.29
COPB1-207ENST00000529866 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.86■□□□□ 0.293e-9■■□□□ 11.4
COPB1-207ENST00000529866 NLRP1Q9C000 1473 aa16.86■□□□□ 0.29
COPB1-207ENST00000529866 NPHP4O75161 1426 aaPredicted RBP16.84■□□□□ 0.29
COPB1-207ENST00000529866 MIA2Q96PC5 1412 aa16.84■□□□□ 0.29
COPB1-207ENST00000529866 POLR1AO95602 1720 aaPredicted RBP16.83■□□□□ 0.28
COPB1-207ENST00000529866 TIAM1Q13009 1591 aa16.83■□□□□ 0.28
COPB1-207ENST00000529866 CCDC141Q6ZP82 1450 aa16.83■□□□□ 0.28
COPB1-207ENST00000529866 EHBP1L1Q8N3D4 1523 aa16.83■□□□□ 0.28
COPB1-207ENST00000529866 CEP162Q5TB80 1403 aa16.82■□□□□ 0.28
COPB1-207ENST00000529866 RSPH4AQ5TD94 716 aa16.82■□□□□ 0.28
COPB1-207ENST00000529866 VWDEQ8N2E2 1590 aa16.81■□□□□ 0.28
COPB1-207ENST00000529866 UGGT1Q9NYU2 1555 aa16.81■□□□□ 0.28
COPB1-207ENST00000529866 MED14O60244 1454 aa16.81■□□□□ 0.28
COPB1-207ENST00000529866 DEPDC5O75140 1603 aa16.78■□□□□ 0.28
COPB1-207ENST00000529866 CAMSAP2Q08AD1 1489 aa16.75■□□□□ 0.27
COPB1-207ENST00000529866 TSPY4P0CV99 314 aa16.75■□□□□ 0.27
COPB1-207ENST00000529866 TSPY10P0CW01 314 aa16.75■□□□□ 0.27
COPB1-207ENST00000529866 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
COPB1-207ENST00000529866 ALKQ9UM73 1620 aa16.74■□□□□ 0.27
COPB1-207ENST00000529866 IQGAP1P46940 1657 aa16.73■□□□□ 0.27
COPB1-207ENST00000529866 LRRC7Q96NW7 1537 aa16.73■□□□□ 0.27
COPB1-207ENST00000529866 RNF17Q9BXT8 1623 aaKnown RBP16.73■□□□□ 0.27
COPB1-207ENST00000529866 SYNMO15061 1565 aa16.72■□□□□ 0.27
COPB1-207ENST00000529866 NCOA2Q15596 1464 aa16.71■□□□□ 0.27
COPB1-207ENST00000529866 ERVK-7P63135 1459 aa16.69■□□□□ 0.26
COPB1-207ENST00000529866 ABCC3O15438 1527 aa16.69■□□□□ 0.26
COPB1-207ENST00000529866 ARHGEF5Q12774 1597 aa16.68■□□□□ 0.26
COPB1-207ENST00000529866 SCAF11Q99590 1463 aaKnown RBP16.67■□□□□ 0.26
COPB1-207ENST00000529866 ZC3H13Q5T200 1668 aaKnown RBP16.65■□□□□ 0.26
COPB1-207ENST00000529866 EID1Q9Y6B2 187 aa16.63■□□□□ 0.25
COPB1-207ENST00000529866 TXNDC2Q86VQ3 553 aa16.62■□□□□ 0.25
COPB1-207ENST00000529866 RGS17Q9UGC6 210 aaPredicted RBP16.62■□□□□ 0.25
COPB1-207ENST00000529866 EIF2AK4Q9P2K8 1649 aaKnown RBP16.6■□□□□ 0.25
COPB1-207ENST00000529866 STRCP1A6NGW2 1772 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 LTKP29376 864 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 FAM135BQ49AJ0 1406 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 ARHGAP23Q9P227 1491 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 SLIT1O75093 1534 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 MAST1Q9Y2H9 1570 aa16.6■□□□□ 0.25
COPB1-207ENST00000529866 ARHGAP31Q2M1Z3 1444 aa16.57■□□□□ 0.24
COPB1-207ENST00000529866 STAG3Q9UJ98 1225 aa16.57■□□□□ 0.24
COPB1-207ENST00000529866 UBR1Q8IWV7 1749 aa16.56■□□□□ 0.24
COPB1-207ENST00000529866 MROH1Q8NDA8 1641 aa16.56■□□□□ 0.24
COPB1-207ENST00000529866 DUOX2Q9NRD8 1548 aa16.55■□□□□ 0.24
COPB1-207ENST00000529866 TMEM2Q9UHN6 1383 aa16.55■□□□□ 0.24
COPB1-207ENST00000529866 MYOM3Q5VTT5 1437 aa16.54■□□□□ 0.24
COPB1-207ENST00000529866 TMEM94Q12767 1356 aa16.54■□□□□ 0.24
COPB1-207ENST00000529866 LRRC9Q6ZRR7 1453 aa16.54■□□□□ 0.24
COPB1-207ENST00000529866 POTEAQ6S8J7 498 aa16.53■□□□□ 0.24
COPB1-207ENST00000529866 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
COPB1-207ENST00000529866 KIF15Q9NS87 1388 aa16.52■□□□□ 0.24
COPB1-207ENST00000529866 PRDM15P57071 1507 aaPredicted RBP16.52■□□□□ 0.24
COPB1-207ENST00000529866 KCNA6P17658 529 aa16.52■□□□□ 0.24
COPB1-207ENST00000529866 KANK1Q14678 1352 aa16.51■□□□□ 0.23
COPB1-207ENST00000529866 CEP152O94986 1710 aa16.49■□□□□ 0.23
COPB1-207ENST00000529866 PROSER2Q86WR7 435 aaPredicted RBP16.49■□□□□ 0.23
COPB1-207ENST00000529866 VPS8Q8N3P4 1428 aa16.48■□□□□ 0.23
COPB1-207ENST00000529866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.232e-7■□□□□ 10.3
COPB1-207ENST00000529866 EFCAB6Q5THR3 1501 aa16.48■□□□□ 0.23
COPB1-207ENST00000529866 MSH6P52701 1360 aa16.48■□□□□ 0.23
COPB1-207ENST00000529866 NKTRP30414 1462 aaKnown RBP16.47■□□□□ 0.23
COPB1-207ENST00000529866 MAP3K1Q13233 1512 aa16.46■□□□□ 0.23
COPB1-207ENST00000529866 SLC26A8Q96RN1 970 aa16.46■□□□□ 0.23
COPB1-207ENST00000529866 RRP7BPQ9NSQ0 103 aa16.46■□□□□ 0.23
COPB1-207ENST00000529866 PIK3C2BO00750 1634 aa16.45■□□□□ 0.22
COPB1-207ENST00000529866 JCADQ9P266 1359 aa16.45■□□□□ 0.22
COPB1-207ENST00000529866 ROBO1Q9Y6N7 1651 aa16.44■□□□□ 0.22
COPB1-207ENST00000529866 IDI1Q13907 227 aa16.44■□□□□ 0.22
COPB1-207ENST00000529866 BCANQ96GW7 911 aa16.44■□□□□ 0.22
COPB1-207ENST00000529866 XIRP1Q702N8 1843 aaKnown RBP16.44■□□□□ 0.22
COPB1-207ENST00000529866 KANK4Q5T7N3 995 aaPredicted RBP16.43■□□□□ 0.22
COPB1-207ENST00000529866 RBM33Q96EV2 1170 aaKnown RBP16.43■□□□□ 0.22
COPB1-207ENST00000529866 KDM5AP29375 1690 aaKnown RBP16.42■□□□□ 0.22
COPB1-207ENST00000529866 ABCC5O15440 1437 aa16.42■□□□□ 0.22
COPB1-207ENST00000529866 LMTK2Q8IWU2 1503 aa16.41■□□□□ 0.22
COPB1-207ENST00000529866 SLAIN2Q9P270 581 aa16.41■□□□□ 0.22
COPB1-207ENST00000529866 CFAP65Q6ZU64 1925 aaKnown RBP16.41■□□□□ 0.22
COPB1-207ENST00000529866 NWD1Q149M9 1564 aa16.4■□□□□ 0.22
COPB1-207ENST00000529866 SLC52A1Q9NWF4 448 aa16.4■□□□□ 0.22
COPB1-207ENST00000529866 TET3O43151 1660 aa16.4■□□□□ 0.22
COPB1-207ENST00000529866 ADGRB3O60242 1522 aa16.4■□□□□ 0.22
COPB1-207ENST00000529866 ANKRD30AQ9BXX3 1397 aa16.38■□□□□ 0.21
COPB1-207ENST00000529866 NOS1P29475 1434 aa16.38■□□□□ 0.21
COPB1-207ENST00000529866 DAPK1P53355 1430 aa16.38■□□□□ 0.21
COPB1-207ENST00000529866 PPP1R15AO75807 674 aaPredicted RBP16.37■□□□□ 0.21
COPB1-207ENST00000529866 HDGFP51858 240 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms