RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 UNC13BO14795 1591 aa28.97■■■□□ 2.23
VPS28-205ENST00000526204 PLXNC1O60486 1568 aa28.95■■■□□ 2.23
VPS28-205ENST00000526204 ST20-MTHFSA0A0A6YYL1 179 aa28.93■■■□□ 2.22
VPS28-205ENST00000526204 MYO5CQ9NQX4 1742 aa28.93■■■□□ 2.22
VPS28-205ENST00000526204 KTN1Q86UP2 1357 aaKnown RBP28.91■■■□□ 2.22
VPS28-205ENST00000526204 PRAG1Q86YV5 1406 aa28.9■■■□□ 2.22
VPS28-205ENST00000526204 ERCC6L2Q5T890 1561 aa28.89■■■□□ 2.22
VPS28-205ENST00000526204 DUOX2Q9NRD8 1548 aa28.88■■■□□ 2.21
VPS28-205ENST00000526204 IRX6P78412 446 aaPredicted RBP28.88■■■□□ 2.21
VPS28-205ENST00000526204 PPP4R2Q9NY27 417 aa28.88■■■□□ 2.21
VPS28-205ENST00000526204 PLCH2O75038 1416 aa28.87■■■□□ 2.21
VPS28-205ENST00000526204 IQGAP3Q86VI3 1631 aa28.87■■■□□ 2.21
VPS28-205ENST00000526204 PLA2R1Q13018 1463 aa28.86■■■□□ 2.21
VPS28-205ENST00000526204 RBM19Q9Y4C8 960 aaKnown RBP28.86■■■□□ 2.21
VPS28-205ENST00000526204 UHRF1BP1LA0JNW5 1464 aa28.86■■■□□ 2.21
VPS28-205ENST00000526204 ERBINQ96RT1 1412 aa28.86■■■□□ 2.21
VPS28-205ENST00000526204 EFCAB2Q5VUJ9 269 aa28.84■■■□□ 2.21
VPS28-205ENST00000526204 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.84■■■□□ 2.219e-9■■■□□ 15.1
VPS28-205ENST00000526204 TRPM1Q7Z4N2 1603 aa28.83■■■□□ 2.21
VPS28-205ENST00000526204 SMG6Q86US8 1419 aaKnown RBP28.83■■■□□ 2.21
VPS28-205ENST00000526204 ATP10AO60312 1499 aa28.83■■■□□ 2.21
VPS28-205ENST00000526204 GPRASP1Q5JY77 1395 aa28.82■■■□□ 2.2
VPS28-205ENST00000526204 RALBP1Q15311 655 aa28.82■■■□□ 2.2
VPS28-205ENST00000526204 TMC1Q8TDI8 760 aa28.82■■■□□ 2.2
VPS28-205ENST00000526204 MAGI2Q86UL8 1455 aa28.82■■■□□ 2.2
VPS28-205ENST00000526204 PNISRQ8TF01 805 aaKnown RBP28.81■■■□□ 2.2
VPS28-205ENST00000526204 A2MP01023 1474 aa28.78■■■□□ 2.2
VPS28-205ENST00000526204 CNGB1Q14028 1251 aaPredicted RBP28.78■■■□□ 2.2
VPS28-205ENST00000526204 BRD4O60885 1362 aaPredicted RBP28.78■■■□□ 2.2
VPS28-205ENST00000526204 CLASP1Q7Z460 1538 aa28.78■■■□□ 2.2
VPS28-205ENST00000526204 RGL3Q3MIN7 710 aa28.78■■■□□ 2.2
VPS28-205ENST00000526204 MYBBP1AQ9BQG0 1328 aaKnown RBP28.78■■■□□ 2.2
VPS28-205ENST00000526204 ZCCHC11Q5TAX3 1644 aaKnown RBP28.77■■■□□ 2.2
VPS28-205ENST00000526204 LAMC1P11047 1609 aa28.76■■■□□ 2.2
VPS28-205ENST00000526204 E9PCH4 1651 aa28.75■■■□□ 2.19
VPS28-205ENST00000526204 NUDCQ9Y266 331 aa28.74■■■□□ 2.19
VPS28-205ENST00000526204 ABCC1P33527 1531 aa28.73■■■□□ 2.19
VPS28-205ENST00000526204 EIF2AK4Q9P2K8 1649 aaKnown RBP28.73■■■□□ 2.19
VPS28-205ENST00000526204 NBPF1Q3BBV0 1214 aa28.71■■■□□ 2.19
VPS28-205ENST00000526204 LRPPRCP42704 1394 aaKnown RBP28.71■■■□□ 2.19
VPS28-205ENST00000526204 PRDM15P57071 1507 aaPredicted RBP28.69■■■□□ 2.18
VPS28-205ENST00000526204 ARAP3Q8WWN8 1544 aa28.69■■■□□ 2.18
VPS28-205ENST00000526204 RTEL1-TNFRSF6BF6WH68 1400 aa28.68■■■□□ 2.18
VPS28-205ENST00000526204 TRAPPC8Q9Y2L5 1435 aa28.67■■■□□ 2.18
VPS28-205ENST00000526204 ANP32EQ9BTT0 268 aa28.66■■■□□ 2.18
VPS28-205ENST00000526204 WASHC2CQ9Y4E1 1318 aa28.66■■■□□ 2.18
VPS28-205ENST00000526204 RNF123Q5XPI4 1314 aa28.65■■■□□ 2.18
VPS28-205ENST00000526204 COL17A1Q9UMD9 1497 aaPredicted RBP28.65■■■□□ 2.18
VPS28-205ENST00000526204 PARD3Q8TEW0 1356 aa28.64■■■□□ 2.17
VPS28-205ENST00000526204 NLRP13Q86W25 1043 aa28.63■■■□□ 2.17
VPS28-205ENST00000526204 SPAG9O60271 1321 aaKnown RBP28.63■■■□□ 2.17
VPS28-205ENST00000526204 TESK2Q96S53 571 aa28.63■■■□□ 2.17
VPS28-205ENST00000526204 PER1O15534 1290 aaPredicted RBP28.61■■■□□ 2.17
VPS28-205ENST00000526204 STAC3Q96MF2 364 aa28.58■■■□□ 2.17
VPS28-205ENST00000526204 TMF1P82094 1093 aa28.58■■■□□ 2.17
VPS28-205ENST00000526204 B4GALNT3Q6L9W6 998 aa28.57■■■□□ 2.16
VPS28-205ENST00000526204 DISP3Q9P2K9 1392 aa28.56■■■□□ 2.16
VPS28-205ENST00000526204 ZFYVE16Q7Z3T8 1539 aa28.55■■■□□ 2.16
VPS28-205ENST00000526204 FANCIQ9NVI1 1328 aa28.54■■■□□ 2.16
VPS28-205ENST00000526204 AFAP1Q8N556 730 aa28.52■■■□□ 2.16
VPS28-205ENST00000526204 RNF17Q9BXT8 1623 aaKnown RBP28.52■■■□□ 2.16
VPS28-205ENST00000526204 TRPM2O94759 1503 aa28.52■■■□□ 2.16
VPS28-205ENST00000526204 WDR7Q9Y4E6 1490 aa28.51■■■□□ 2.15
VPS28-205ENST00000526204 PTPRTO14522 1441 aa28.51■■■□□ 2.15
VPS28-205ENST00000526204 INSRP06213 1382 aa28.5■■■□□ 2.15
VPS28-205ENST00000526204 DEPDC5O75140 1603 aa28.47■■■□□ 2.15
VPS28-205ENST00000526204 PDE3BQ13370 1112 aa28.47■■■□□ 2.15
VPS28-205ENST00000526204 PANK3Q9H999 370 aa28.47■■■□□ 2.15
VPS28-205ENST00000526204 KANK1Q14678 1352 aa28.46■■■□□ 2.15
VPS28-205ENST00000526204 ZMYM4Q5VZL5 1548 aa28.45■■■□□ 2.15
VPS28-205ENST00000526204 FANCAO15360 1455 aa28.45■■■□□ 2.15
VPS28-205ENST00000526204 MADDQ8WXG6 1647 aa28.44■■■□□ 2.14
VPS28-205ENST00000526204 ABCA9Q8IUA7 1624 aa28.43■■■□□ 2.14
VPS28-205ENST00000526204 ATP7AQ04656 1500 aa28.43■■■□□ 2.14
VPS28-205ENST00000526204 SCAPERQ9BY12 1400 aa28.43■■■□□ 2.14
VPS28-205ENST00000526204 TET3O43151 1660 aa28.42■■■□□ 2.14
VPS28-205ENST00000526204 INO80Q9ULG1 1556 aaPredicted RBP28.41■■■□□ 2.14
VPS28-205ENST00000526204 SPHKAPQ2M3C7 1700 aa28.41■■■□□ 2.14
VPS28-205ENST00000526204 CDCA8Q53HL2 280 aa28.4■■■□□ 2.14
VPS28-205ENST00000526204 CC2D1BQ5T0F9 858 aaKnown RBP28.4■■■□□ 2.14
VPS28-205ENST00000526204 CEP152O94986 1710 aa28.4■■■□□ 2.14
VPS28-205ENST00000526204 VWDEQ8N2E2 1590 aa28.4■■■□□ 2.14
VPS28-205ENST00000526204 CCDC136Q96JN2 1154 aa28.4■■■□□ 2.14
VPS28-205ENST00000526204 SCAF11Q99590 1463 aaKnown RBP28.38■■■□□ 2.13
VPS28-205ENST00000526204 OSCARQ8IYS5 282 aa28.38■■■□□ 2.13
VPS28-205ENST00000526204 IQGAP1P46940 1657 aa28.38■■■□□ 2.13
VPS28-205ENST00000526204 SENP3-EIF4A1A0A087X0R7 540 aa28.37■■■□□ 2.13
VPS28-205ENST00000526204 CLTCL1P53675 1640 aa28.37■■■□□ 2.13
VPS28-205ENST00000526204 NEURL4Q96JN8 1562 aa28.37■■■□□ 2.13
VPS28-205ENST00000526204 ADGRL1O94910 1474 aa28.35■■■□□ 2.13
VPS28-205ENST00000526204 BLMP54132 1417 aaPredicted RBP28.33■■■□□ 2.13
VPS28-205ENST00000526204 KIF3BO15066 747 aa28.33■■■□□ 2.13
VPS28-205ENST00000526204 RCAN3Q9UKA8 241 aa28.33■■■□□ 2.13
VPS28-205ENST00000526204 RRP1P56182 461 aaKnown RBP28.32■■■□□ 2.12
VPS28-205ENST00000526204 EIF3AQ14152 1382 aaKnown RBP28.31■■■□□ 2.12
VPS28-205ENST00000526204 MSH5O43196 834 aa28.31■■■□□ 2.12
VPS28-205ENST00000526204 KNSTRNQ9Y448 316 aa28.31■■■□□ 2.12
VPS28-205ENST00000526204 MYT1LQ9UL68 1186 aa28.3■■■□□ 2.12
VPS28-205ENST00000526204 SLC24A1O60721 1099 aa28.3■■■□□ 2.12
VPS28-205ENST00000526204 ASXL2Q76L83 1435 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms