RNA–Protein interactions for RNA: ENST00000524454.1

VPS11-201, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 626 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-201ENST00000524454 ADGBQ8N7X0 1667 aa10.73□□□□□ -0.69
VPS11-201ENST00000524454 ZEB1P37275 1124 aaPredicted RBP10.73□□□□□ -0.69
VPS11-201ENST00000524454 SPAG9O60271 1321 aaKnown RBP10.73□□□□□ -0.69
VPS11-201ENST00000524454 KIAA1107Q9UPP5 1409 aa10.73□□□□□ -0.69
VPS11-201ENST00000524454 MBD5Q9P267 1494 aa10.73□□□□□ -0.69
VPS11-201ENST00000524454 REREQ9P2R6 1566 aa10.73□□□□□ -0.69
VPS11-201ENST00000524454 CCDC141Q6ZP82 1450 aa10.7□□□□□ -0.7
VPS11-201ENST00000524454 MYOM3Q5VTT5 1437 aa10.7□□□□□ -0.7
VPS11-201ENST00000524454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS11-201ENST00000524454 PTPN23Q9H3S7 1636 aa10.69□□□□□ -0.7
VPS11-201ENST00000524454 PLXNC1O60486 1568 aa10.69□□□□□ -0.7
VPS11-201ENST00000524454 ARHGEF5Q12774 1597 aa10.69□□□□□ -0.7
VPS11-201ENST00000524454 PPARGC1BQ86YN6 1023 aaKnown RBP10.68□□□□□ -0.7
VPS11-201ENST00000524454 C3P01024 1663 aa10.68□□□□□ -0.7
VPS11-201ENST00000524454 AGLP35573 1532 aa10.68□□□□□ -0.7
VPS11-201ENST00000524454 A2MP01023 1474 aa10.68□□□□□ -0.7
VPS11-201ENST00000524454 CROCC2H7BZ55 1655 aa10.67□□□□□ -0.7
VPS11-201ENST00000524454 CLTCQ00610 1675 aaKnown RBP10.67□□□□□ -0.7
VPS11-201ENST00000524454 CEBPAP49715 358 aaPredicted RBP10.67□□□□□ -0.7
VPS11-201ENST00000524454 FGD6Q6ZV73 1430 aa10.65□□□□□ -0.7
VPS11-201ENST00000524454 MIA2Q96PC5 1412 aa10.65□□□□□ -0.7
VPS11-201ENST00000524454 RTEL1-TNFRSF6BF6WH68 1400 aa10.64□□□□□ -0.71
VPS11-201ENST00000524454 MAST1Q9Y2H9 1570 aa10.64□□□□□ -0.71
VPS11-201ENST00000524454 LMTK3Q96Q04 1460 aa10.63□□□□□ -0.71
VPS11-201ENST00000524454 PREX1Q8TCU6 1659 aa10.63□□□□□ -0.71
VPS11-201ENST00000524454 DNMT1P26358 1616 aaKnown RBP10.62□□□□□ -0.71
VPS11-201ENST00000524454 GGT6Q6P531 493 aa10.62□□□□□ -0.71
VPS11-201ENST00000524454 MROH2AA6NES4 1674 aa10.62□□□□□ -0.71
VPS11-201ENST00000524454 TCOF1Q13428 1488 aaKnown RBP10.61□□□□□ -0.71
VPS11-201ENST00000524454 ABCC5O15440 1437 aa10.61□□□□□ -0.71
VPS11-201ENST00000524454 TSPY4P0CV99 314 aa10.61□□□□□ -0.71
VPS11-201ENST00000524454 TSPY10P0CW01 314 aa10.61□□□□□ -0.71
VPS11-201ENST00000524454 HSPA2P54652 639 aa10.61□□□□□ -0.71
VPS11-201ENST00000524454 ESF1Q9H501 851 aaKnown RBP10.61□□□□□ -0.71
VPS11-201ENST00000524454 DHX29Q7Z478 1369 aaKnown RBP10.61□□□□□ -0.71
VPS11-201ENST00000524454 DAPK1P53355 1430 aa10.6□□□□□ -0.71
VPS11-201ENST00000524454 KIF3BO15066 747 aa10.59□□□□□ -0.71
VPS11-201ENST00000524454 FAM50AQ14320 339 aaKnown RBP10.59□□□□□ -0.71
VPS11-201ENST00000524454 RSPH4AQ5TD94 716 aa10.59□□□□□ -0.71
VPS11-201ENST00000524454 CLSPNQ9HAW4 1339 aa10.58□□□□□ -0.71
VPS11-201ENST00000524454 CEP152O94986 1710 aa10.58□□□□□ -0.72
VPS11-201ENST00000524454 CHIC2Q9UKJ5 165 aa10.58□□□□□ -0.72
VPS11-201ENST00000524454 SHANK2Q9UPX8 1470 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 SPDYE2BA6NHP3 402 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 SPDYE6P0CI01 402 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 SPDYE2Q495Y8 402 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 RBM42Q9BTD8 480 aaKnown RBP10.57□□□□□ -0.72
VPS11-201ENST00000524454 RRP7BPQ9NSQ0 103 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 RNF17Q9BXT8 1623 aaKnown RBP10.57□□□□□ -0.72
VPS11-201ENST00000524454 CNTLNQ9NXG0 1405 aa10.57□□□□□ -0.72
VPS11-201ENST00000524454 ZMYM3Q14202 1370 aa10.56□□□□□ -0.72
VPS11-201ENST00000524454 MROH1Q8NDA8 1641 aa10.56□□□□□ -0.72
VPS11-201ENST00000524454 EIF2AK4Q9P2K8 1649 aaKnown RBP10.56□□□□□ -0.72
VPS11-201ENST00000524454 MYO3AQ8NEV4 1616 aa10.55□□□□□ -0.72
VPS11-201ENST00000524454 KIF15Q9NS87 1388 aa10.55□□□□□ -0.72
VPS11-201ENST00000524454 KDM5DQ9BY66 1539 aa10.55□□□□□ -0.72
VPS11-201ENST00000524454 DUOX2Q9NRD8 1548 aa10.55□□□□□ -0.72
VPS11-201ENST00000524454 UHRF1BP1Q6BDS2 1440 aa10.55□□□□□ -0.72
VPS11-201ENST00000524454 SPDYE4A6NLX3 237 aa10.54□□□□□ -0.72
VPS11-201ENST00000524454 SSUH2Q9Y2M2 353 aa10.54□□□□□ -0.72
VPS11-201ENST00000524454 CFAP65Q6ZU64 1925 aaKnown RBP10.53□□□□□ -0.72
VPS11-201ENST00000524454 STRCQ7RTU9 1775 aa10.53□□□□□ -0.72
VPS11-201ENST00000524454 ITGAEP38570 1179 aa10.53□□□□□ -0.72
VPS11-201ENST00000524454 CAMSAP1Q5T5Y3 1602 aa10.53□□□□□ -0.72
VPS11-201ENST00000524454 SETD1BQ9UPS6 1966 aaKnown RBP10.53□□□□□ -0.72
VPS11-201ENST00000524454 ZC3H13Q5T200 1668 aaKnown RBP10.53□□□□□ -0.72
VPS11-201ENST00000524454 PTPRKQ15262 1439 aa10.52□□□□□ -0.73
VPS11-201ENST00000524454 FKBP8Q14318 412 aa10.52□□□□□ -0.73
VPS11-201ENST00000524454 FBXO31Q5XUX0 539 aaPredicted RBP10.52□□□□□ -0.73
VPS11-201ENST00000524454 ABCC3O15438 1527 aa10.52□□□□□ -0.73
VPS11-201ENST00000524454 ACIN1Q9UKV3 1341 aaKnown RBP10.52□□□□□ -0.73
VPS11-201ENST00000524454 WASHC2CQ9Y4E1 1318 aa10.52□□□□□ -0.73
VPS11-201ENST00000524454 ZNF142P52746 1687 aaPredicted RBP10.51□□□□□ -0.73
VPS11-201ENST00000524454 ZNF692Q9BU19 519 aaPredicted RBP10.51□□□□□ -0.73
VPS11-201ENST00000524454 DEPDC5O75140 1603 aa10.51□□□□□ -0.73
VPS11-201ENST00000524454 ANKRD30AQ9BXX3 1397 aa10.51□□□□□ -0.73
VPS11-201ENST00000524454 NPATQ14207 1427 aa10.5□□□□□ -0.73
VPS11-201ENST00000524454 ERBINQ96RT1 1412 aa10.5□□□□□ -0.73
VPS11-201ENST00000524454 PRDM15P57071 1507 aaPredicted RBP10.5□□□□□ -0.73
VPS11-201ENST00000524454 CEP170BQ9Y4F5 1589 aaPredicted RBP10.5□□□□□ -0.73
VPS11-201ENST00000524454 NCOA1Q15788 1441 aa10.5□□□□□ -0.73
VPS11-201ENST00000524454 ADGRL2O95490 1459 aa10.49□□□□□ -0.73
VPS11-201ENST00000524454 PZPP20742 1482 aa10.49□□□□□ -0.73
VPS11-201ENST00000524454 FAM135AQ9P2D6 1515 aa10.48□□□□□ -0.73
VPS11-201ENST00000524454 CCER1Q8TC90 406 aaPredicted RBP10.48□□□□□ -0.73
VPS11-201ENST00000524454 AKT1S1Q96B36 256 aa10.46□□□□□ -0.73
VPS11-201ENST00000524454 TNRQ92752 1358 aa10.46□□□□□ -0.74
VPS11-201ENST00000524454 HFM1A2PYH4 1435 aa10.46□□□□□ -0.74
VPS11-201ENST00000524454 SETD5Q9C0A6 1442 aa10.45□□□□□ -0.74
VPS11-201ENST00000524454 SPATA31D1Q6ZQQ2 1576 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 VWDEQ8N2E2 1590 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 A2ML1A8K2U0 1454 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 ERVK-7P63135 1459 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 ANKRD50Q9ULJ7 1429 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 NCKAP5LQ9HCH0 1330 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 PROM2Q8N271 834 aa10.44□□□□□ -0.74
VPS11-201ENST00000524454 POLR1AO95602 1720 aaPredicted RBP10.44□□□□□ -0.74
VPS11-201ENST00000524454 UNC13BO14795 1591 aa10.43□□□□□ -0.74
VPS11-201ENST00000524454 KANK1Q14678 1352 aa10.42□□□□□ -0.74
VPS11-201ENST00000524454 GCC2Q8IWJ2 1684 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms