RNA–Protein interactions for RNA: ENST00000524454.1

VPS11-201, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 626 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-201ENST00000524454 AEBP2Q6ZN18 517 aaPredicted RBP18.95■□□□□ 0.62
VPS11-201ENST00000524454 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
VPS11-201ENST00000524454 NISCHQ9Y2I1 1504 aa16.74■□□□□ 0.27
VPS11-201ENST00000524454 PHF23Q9BUL5 403 aaPredicted RBP16.22■□□□□ 0.19
VPS11-201ENST00000524454 SENP3Q9H4L4 574 aaPredicted RBP15.97■□□□□ 0.15
VPS11-201ENST00000524454 CCDC180Q9P1Z9 1646 aa14.93□□□□□ -0.02
VPS11-201ENST00000524454 FOXD1Q16676 465 aa14.89□□□□□ -0.03
VPS11-201ENST00000524454 PLPPR3Q6T4P5 718 aa14.86□□□□□ -0.03
VPS11-201ENST00000524454 ABCC9O60706 1549 aa14.73□□□□□ -0.05
VPS11-201ENST00000524454 PPP6R1Q9UPN7 881 aa14.33□□□□□ -0.12
VPS11-201ENST00000524454 ADRA2BP18089 450 aa14.28□□□□□ -0.12
VPS11-201ENST00000524454 DCAF8L2P0C7V8 631 aa14.07□□□□□ -0.16
VPS11-201ENST00000524454 RB1CC1Q8TDY2 1594 aa14.07□□□□□ -0.16
VPS11-201ENST00000524454 NACADO15069 1562 aa14.01□□□□□ -0.17
VPS11-201ENST00000524454 PIAS4Q8N2W9 510 aaPredicted RBP13.98□□□□□ -0.17
VPS11-201ENST00000524454 ZCCHC6Q5VYS8 1495 aaKnown RBP13.93□□□□□ -0.18
VPS11-201ENST00000524454 UNC13AQ9UPW8 1703 aa13.88□□□□□ -0.19
VPS11-201ENST00000524454 MYO15BQ96JP2 1530 aa13.84□□□□□ -0.19
VPS11-201ENST00000524454 DCAF1Q9Y4B6 1507 aa13.78□□□□□ -0.2
VPS11-201ENST00000524454 PABPN1Q86U42 306 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS11-201ENST00000524454 SCRIBQ14160 1630 aa13.7□□□□□ -0.22
VPS11-201ENST00000524454 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
VPS11-201ENST00000524454 MSH5O43196 834 aa13.67□□□□□ -0.22
VPS11-201ENST00000524454 DNAJC5BQ9UF47 199 aa13.57□□□□□ -0.24
VPS11-201ENST00000524454 SHROOM4Q9ULL8 1493 aa13.41□□□□□ -0.26
VPS11-201ENST00000524454 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
VPS11-201ENST00000524454 CC2D2AQ9P2K1 1620 aa13.31□□□□□ -0.28
VPS11-201ENST00000524454 CECR2Q9BXF3 1484 aa13.2□□□□□ -0.3
VPS11-201ENST00000524454 PPP4R3CPQ6ZMV5 832 aa13.12□□□□□ -0.31
VPS11-201ENST00000524454 SMARCA4P51532 1647 aa13.05□□□□□ -0.32
VPS11-201ENST00000524454 MAPK8IP2Q13387 824 aaPredicted RBP12.98□□□□□ -0.33
VPS11-201ENST00000524454 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
VPS11-201ENST00000524454 ATAD2BQ9ULI0 1458 aa12.95□□□□□ -0.34
VPS11-201ENST00000524454 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
VPS11-201ENST00000524454 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
VPS11-201ENST00000524454 NCAPD3P42695 1498 aa12.91□□□□□ -0.34
VPS11-201ENST00000524454 SMARCA2P51531 1590 aa12.91□□□□□ -0.34
VPS11-201ENST00000524454 HMGXB3Q12766 1538 aa12.87□□□□□ -0.35
VPS11-201ENST00000524454 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
VPS11-201ENST00000524454 BAZ1BQ9UIG0 1483 aaKnown RBP12.85□□□□□ -0.35
VPS11-201ENST00000524454 WIZO95785 1651 aa12.85□□□□□ -0.35
VPS11-201ENST00000524454 KCNA4P22459 653 aa12.82□□□□□ -0.36
VPS11-201ENST00000524454 DMRT2Q9Y5R5 561 aa12.78□□□□□ -0.36
VPS11-201ENST00000524454 NESP48681 1621 aa12.74□□□□□ -0.37
VPS11-201ENST00000524454 CNKSR2Q8WXI2 1034 aa12.73□□□□□ -0.37
VPS11-201ENST00000524454 RSF1Q96T23 1441 aaPredicted RBP12.72□□□□□ -0.37
VPS11-201ENST00000524454 NCBP3Q53F19 620 aaKnown RBP12.68□□□□□ -0.38
VPS11-201ENST00000524454 ERCC6Q03468 1493 aa12.66□□□□□ -0.38
VPS11-201ENST00000524454 TOP2AP11388 1531 aaKnown RBP12.64□□□□□ -0.39
VPS11-201ENST00000524454 KIF21AQ7Z4S6 1674 aa12.62□□□□□ -0.39
VPS11-201ENST00000524454 LAMC3Q9Y6N6 1575 aa12.61□□□□□ -0.39
VPS11-201ENST00000524454 NPM3O75607 178 aaKnown RBP12.61□□□□□ -0.39
VPS11-201ENST00000524454 POTEDQ86YR6 584 aa12.59□□□□□ -0.39
VPS11-201ENST00000524454 THOC2Q8NI27 1593 aaKnown RBP12.55□□□□□ -0.4
VPS11-201ENST00000524454 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
VPS11-201ENST00000524454 RNF216Q9NWF9 866 aaPredicted RBP12.51□□□□□ -0.41
VPS11-201ENST00000524454 HOXD11P31277 338 aaPredicted RBP12.5□□□□□ -0.41
VPS11-201ENST00000524454 PDS5BQ9NTI5 1447 aa12.5□□□□□ -0.41
VPS11-201ENST00000524454 CUX2O14529 1486 aa12.5□□□□□ -0.41
VPS11-201ENST00000524454 CCDC88BA6NC98 1476 aa12.49□□□□□ -0.41
VPS11-201ENST00000524454 PRDM2Q13029 1718 aa12.46□□□□□ -0.41
VPS11-201ENST00000524454 CFTRP13569 1480 aa12.46□□□□□ -0.42
VPS11-201ENST00000524454 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
VPS11-201ENST00000524454 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
VPS11-201ENST00000524454 MRC2Q9UBG0 1479 aa12.42□□□□□ -0.42
VPS11-201ENST00000524454 SUPT5HO00267 1087 aaKnown RBP12.41□□□□□ -0.42
VPS11-201ENST00000524454 WDR62O43379 1518 aa12.39□□□□□ -0.43
VPS11-201ENST00000524454 URB2Q14146 1524 aaKnown RBP12.35□□□□□ -0.43
VPS11-201ENST00000524454 TOPBP1Q92547 1522 aa12.25□□□□□ -0.45
VPS11-201ENST00000524454 DNMBPQ6XZF7 1577 aa12.22□□□□□ -0.45
VPS11-201ENST00000524454 DNAJC5Q9H3Z4 198 aa12.2□□□□□ -0.46
VPS11-201ENST00000524454 ZNF608Q9ULD9 1512 aaPredicted RBP12.16□□□□□ -0.46
VPS11-201ENST00000524454 ABCC8Q09428 1581 aa12.15□□□□□ -0.46
VPS11-201ENST00000524454 DCAF8L1A6NGE4 600 aa12.15□□□□□ -0.46
VPS11-201ENST00000524454 CUX1P39880 1505 aa12.15□□□□□ -0.46
VPS11-201ENST00000524454 IFT140Q96RY7 1462 aa12.14□□□□□ -0.47
VPS11-201ENST00000524454 POLA1P09884 1462 aaPredicted RBP12.14□□□□□ -0.47
VPS11-201ENST00000524454 TARBP1Q13395 1621 aaKnown RBP12.13□□□□□ -0.47
VPS11-201ENST00000524454 SLC4A1APQ9BWU0 796 aaKnown RBP12.13□□□□□ -0.47
VPS11-201ENST00000524454 EIF4G3O43432 1585 aaKnown RBP12.13□□□□□ -0.47
VPS11-201ENST00000524454 RAD54L2Q9Y4B4 1467 aa12.12□□□□□ -0.47
VPS11-201ENST00000524454 FGD5Q6ZNL6 1462 aa12.11□□□□□ -0.47
VPS11-201ENST00000524454 AQRO60306 1485 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS11-201ENST00000524454 SOGA1O94964 1423 aa12.06□□□□□ -0.48
VPS11-201ENST00000524454 WDR97A6NE52 1622 aa12.05□□□□□ -0.48
VPS11-201ENST00000524454 SYNJ1O43426 1573 aa12.05□□□□□ -0.48
VPS11-201ENST00000524454 CHD1O14646 1710 aa12.03□□□□□ -0.48
VPS11-201ENST00000524454 TDRD9Q8NDG6 1382 aaKnown RBP12.03□□□□□ -0.48
VPS11-201ENST00000524454 BIVM-ERCC5R4GMW8 1640 aa12.02□□□□□ -0.49
VPS11-201ENST00000524454 TOP2BQ02880 1626 aa12□□□□□ -0.49
VPS11-201ENST00000524454 WRNQ14191 1432 aaPredicted RBP eCLIP12□□□□□ -0.49
VPS11-201ENST00000524454 PBRM1Q86U86 1689 aa12□□□□□ -0.49
VPS11-201ENST00000524454 SNAPC4Q5SXM2 1469 aa11.96□□□□□ -0.49
VPS11-201ENST00000524454 OSCARQ8IYS5 282 aa11.96□□□□□ -0.49
VPS11-201ENST00000524454 ABCA5Q8WWZ7 1642 aa11.96□□□□□ -0.5
VPS11-201ENST00000524454 SLC4A2P04920 1241 aa11.95□□□□□ -0.5
VPS11-201ENST00000524454 FBLN2P98095 1184 aa11.94□□□□□ -0.5
VPS11-201ENST00000524454 ABCA10Q8WWZ4 1543 aa11.94□□□□□ -0.5
VPS11-201ENST00000524454 GRIN2BQ13224 1484 aa11.92□□□□□ -0.5
VPS11-201ENST00000524454 GAPVD1Q14C86 1478 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms