RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.11■■□□□ 1.29
NKX3-1-202ENST00000523261 NPHP4O75161 1426 aaPredicted RBP23.1■■□□□ 1.29
NKX3-1-202ENST00000523261 FBXO31Q5XUX0 539 aaPredicted RBP23.1■■□□□ 1.29
NKX3-1-202ENST00000523261 ADGBQ8N7X0 1667 aa23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 LRRC7Q96NW7 1537 aa23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 DEPDC5O75140 1603 aa23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 RNF17Q9BXT8 1623 aaKnown RBP23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 EHMT2Q96KQ7 1210 aa23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 STRCP1A6NGW2 1772 aa23.09■■□□□ 1.29
NKX3-1-202ENST00000523261 CASKIN1Q8WXD9 1431 aa23.08■■□□□ 1.29
NKX3-1-202ENST00000523261 PLEKHH2Q8IVE3 1493 aa23.07■■□□□ 1.28
NKX3-1-202ENST00000523261 PZPP20742 1482 aa23.05■■□□□ 1.28
NKX3-1-202ENST00000523261 THEMISQ8N1K5 641 aaPredicted RBP23.05■■□□□ 1.28
NKX3-1-202ENST00000523261 SYNMO15061 1565 aa23.05■■□□□ 1.28
NKX3-1-202ENST00000523261 IQGAP1P46940 1657 aa23.04■■□□□ 1.28
NKX3-1-202ENST00000523261 POTEAQ6S8J7 498 aa23.04■■□□□ 1.28
NKX3-1-202ENST00000523261 UGGT1Q9NYU2 1555 aa23.02■■□□□ 1.28
NKX3-1-202ENST00000523261 NLRP1Q9C000 1473 aa23.01■■□□□ 1.27
NKX3-1-202ENST00000523261 CFDP1Q9UEE9 299 aaPredicted RBP23■■□□□ 1.27
NKX3-1-202ENST00000523261 MIA2Q96PC5 1412 aa22.99■■□□□ 1.27
NKX3-1-202ENST00000523261 FAM135AQ9P2D6 1515 aa22.99■■□□□ 1.27
NKX3-1-202ENST00000523261 KDM5DQ9BY66 1539 aa22.98■■□□□ 1.27
NKX3-1-202ENST00000523261 DHX29Q7Z478 1369 aaKnown RBP22.98■■□□□ 1.27
NKX3-1-202ENST00000523261 FYCO1Q9BQS8 1478 aa22.93■■□□□ 1.26
NKX3-1-202ENST00000523261 RTEL1-TNFRSF6BF6WH68 1400 aa22.93■■□□□ 1.26
NKX3-1-202ENST00000523261 MBD5Q9P267 1494 aa22.92■■□□□ 1.26
NKX3-1-202ENST00000523261 CCNB3Q8WWL7 1395 aa22.92■■□□□ 1.26
NKX3-1-202ENST00000523261 SETD1AO15047 1707 aaKnown RBP22.92■■□□□ 1.26
NKX3-1-202ENST00000523261 KIF3BO15066 747 aa22.92■■□□□ 1.26
NKX3-1-202ENST00000523261 ZC3H13Q5T200 1668 aaKnown RBP22.91■■□□□ 1.26
NKX3-1-202ENST00000523261 WASHC2CQ9Y4E1 1318 aa22.9■■□□□ 1.26
NKX3-1-202ENST00000523261 ZNF644Q9H582 1327 aaPredicted RBP22.89■■□□□ 1.26
NKX3-1-202ENST00000523261 XIRP1Q702N8 1843 aaKnown RBP22.89■■□□□ 1.25
NKX3-1-202ENST00000523261 FAM135BQ49AJ0 1406 aa22.88■■□□□ 1.25
NKX3-1-202ENST00000523261 TIAM1Q13009 1591 aa22.8■■□□□ 1.24
NKX3-1-202ENST00000523261 SCAF11Q99590 1463 aaKnown RBP22.79■■□□□ 1.24
NKX3-1-202ENST00000523261 UBR1Q8IWV7 1749 aa22.77■■□□□ 1.23
NKX3-1-202ENST00000523261 ERVK-7P63135 1459 aa22.76■■□□□ 1.23
NKX3-1-202ENST00000523261 ROBO1Q9Y6N7 1651 aa22.76■■□□□ 1.23
NKX3-1-202ENST00000523261 MTUS2Q5JR59 1369 aa22.76■■□□□ 1.23
NKX3-1-202ENST00000523261 CCDC141Q6ZP82 1450 aa22.75■■□□□ 1.23
NKX3-1-202ENST00000523261 UPF1Q92900 1129 aaKnown RBP eCLIP22.75■■□□□ 1.23
NKX3-1-202ENST00000523261 NCOA2Q15596 1464 aa22.74■■□□□ 1.23
NKX3-1-202ENST00000523261 ABCC3O15438 1527 aa22.74■■□□□ 1.23
NKX3-1-202ENST00000523261 LTKP29376 864 aa22.74■■□□□ 1.23
NKX3-1-202ENST00000523261 ARHGAP23Q9P227 1491 aa22.73■■□□□ 1.23
NKX3-1-202ENST00000523261 SLIT1O75093 1534 aa22.72■■□□□ 1.23
NKX3-1-202ENST00000523261 TMEM94Q12767 1356 aa22.71■■□□□ 1.23
NKX3-1-202ENST00000523261 TXNDC2Q86VQ3 553 aa22.7■■□□□ 1.22
NKX3-1-202ENST00000523261 MAP3K1Q13233 1512 aa22.67■■□□□ 1.22
NKX3-1-202ENST00000523261 LRRC9Q6ZRR7 1453 aa22.66■■□□□ 1.22
NKX3-1-202ENST00000523261 RSPH4AQ5TD94 716 aa22.65■■□□□ 1.22
NKX3-1-202ENST00000523261 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
NKX3-1-202ENST00000523261 CAMSAP2Q08AD1 1489 aa22.65■■□□□ 1.22
NKX3-1-202ENST00000523261 JCADQ9P266 1359 aa22.64■■□□□ 1.22
NKX3-1-202ENST00000523261 EHBP1L1Q8N3D4 1523 aa22.64■■□□□ 1.21
NKX3-1-202ENST00000523261 CEP162Q5TB80 1403 aa22.64■■□□□ 1.21
NKX3-1-202ENST00000523261 CFAP65Q6ZU64 1925 aaKnown RBP22.63■■□□□ 1.21
NKX3-1-202ENST00000523261 PHLPP1O60346 1717 aa22.62■■□□□ 1.21
NKX3-1-202ENST00000523261 MROH1Q8NDA8 1641 aa22.61■■□□□ 1.21
NKX3-1-202ENST00000523261 EID1Q9Y6B2 187 aa22.61■■□□□ 1.21
NKX3-1-202ENST00000523261 KCNA6P17658 529 aa22.6■■□□□ 1.21
NKX3-1-202ENST00000523261 CEP152O94986 1710 aa22.6■■□□□ 1.21
NKX3-1-202ENST00000523261 ARHGEF5Q12774 1597 aa22.59■■□□□ 1.21
NKX3-1-202ENST00000523261 PROSER2Q86WR7 435 aaPredicted RBP22.59■■□□□ 1.21
NKX3-1-202ENST00000523261 TRIM52Q96A61 297 aa22.59■■□□□ 1.21
NKX3-1-202ENST00000523261 RBM33Q96EV2 1170 aaKnown RBP22.59■■□□□ 1.21
NKX3-1-202ENST00000523261 SRCAPQ6ZRS2 3230 aa22.59■■□□□ 1.21
NKX3-1-202ENST00000523261 LRP6O75581 1613 aa22.58■■□□□ 1.21
NKX3-1-202ENST00000523261 PRDM15P57071 1507 aaPredicted RBP22.57■■□□□ 1.2
NKX3-1-202ENST00000523261 EIF2AK4Q9P2K8 1649 aaKnown RBP22.57■■□□□ 1.2
NKX3-1-202ENST00000523261 TMEM2Q9UHN6 1383 aa22.56■■□□□ 1.2
NKX3-1-202ENST00000523261 ZNF772Q68DY9 489 aaPredicted RBP22.56■■□□□ 1.2
NKX3-1-202ENST00000523261 COL16A1Q07092 1604 aaPredicted RBP22.56■■□□□ 1.2
NKX3-1-202ENST00000523261 TSPY4P0CV99 314 aa22.55■■□□□ 1.2
NKX3-1-202ENST00000523261 TSPY10P0CW01 314 aa22.55■■□□□ 1.2
NKX3-1-202ENST00000523261 SLAIN2Q9P270 581 aa22.54■■□□□ 1.2
NKX3-1-202ENST00000523261 NKTRP30414 1462 aaKnown RBP22.54■■□□□ 1.2
NKX3-1-202ENST00000523261 PIK3C2BO00750 1634 aa22.53■■□□□ 1.2
NKX3-1-202ENST00000523261 TET3O43151 1660 aa22.52■■□□□ 1.2
NKX3-1-202ENST00000523261 MSH6P52701 1360 aa22.52■■□□□ 1.2
NKX3-1-202ENST00000523261 NWD1Q149M9 1564 aa22.52■■□□□ 1.2
NKX3-1-202ENST00000523261 SPATA31A6Q5VVP1 1343 aa22.52■■□□□ 1.2
NKX3-1-202ENST00000523261 ARHGAP31Q2M1Z3 1444 aa22.51■■□□□ 1.19
NKX3-1-202ENST00000523261 SLC26A8Q96RN1 970 aa22.51■■□□□ 1.19
NKX3-1-202ENST00000523261 MAST1Q9Y2H9 1570 aa22.5■■□□□ 1.19
NKX3-1-202ENST00000523261 FGD6Q6ZV73 1430 aa22.5■■□□□ 1.19
NKX3-1-202ENST00000523261 CDK12Q9NYV4 1490 aaPredicted RBP22.49■■□□□ 1.19
NKX3-1-202ENST00000523261 MEX3CQ5U5Q3 659 aaKnown RBP22.49■■□□□ 1.19
NKX3-1-202ENST00000523261 RXRBP28702 533 aa22.48■■□□□ 1.19
NKX3-1-202ENST00000523261 KDM5AP29375 1690 aaKnown RBP22.46■■□□□ 1.19
NKX3-1-202ENST00000523261 EFCAB6Q5THR3 1501 aa22.46■■□□□ 1.19
NKX3-1-202ENST00000523261 SHPRHQ149N8 1683 aa22.44■■□□□ 1.18
NKX3-1-202ENST00000523261 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
NKX3-1-202ENST00000523261 AHDC1Q5TGY3 1603 aaPredicted RBP22.4■■□□□ 1.18
NKX3-1-202ENST00000523261 DUOX2Q9NRD8 1548 aa22.4■■□□□ 1.18
NKX3-1-202ENST00000523261 IDI1Q13907 227 aa22.39■■□□□ 1.17
NKX3-1-202ENST00000523261 CHD2O14647 1828 aaKnown RBP22.36■■□□□ 1.17
NKX3-1-202ENST00000523261 DIP2AQ14689 1571 aa22.33■■□□□ 1.17
NKX3-1-202ENST00000523261 RGS12O14924 1447 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms