RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 MLECQ14165 292 aa16.81■□□□□ 0.28
BRCA1-222ENST00000493919 PLXNC1O60486 1568 aa16.8■□□□□ 0.28
BRCA1-222ENST00000493919 ITGAEP38570 1179 aa16.8■□□□□ 0.28
BRCA1-222ENST00000493919 CHIC2Q9UKJ5 165 aa16.8■□□□□ 0.28
BRCA1-222ENST00000493919 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
BRCA1-222ENST00000493919 MADDQ8WXG6 1647 aa16.77■□□□□ 0.28
BRCA1-222ENST00000493919 KDM4FA0A1W2PPD8 638 aa16.76■□□□□ 0.27
BRCA1-222ENST00000493919 AGLP35573 1532 aa16.76■□□□□ 0.27
BRCA1-222ENST00000493919 KIF15Q9NS87 1388 aa16.76■□□□□ 0.27
BRCA1-222ENST00000493919 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.75■□□□□ 0.27
BRCA1-222ENST00000493919 ADAMTSL3P82987 1691 aa16.75■□□□□ 0.27
BRCA1-222ENST00000493919 PDIA4P13667 645 aaKnown RBP16.75■□□□□ 0.27
BRCA1-222ENST00000493919 PTPRKQ15262 1439 aa16.75■□□□□ 0.27
BRCA1-222ENST00000493919 FER1L4A9Z1Z3 1794 aa16.75■□□□□ 0.27
BRCA1-222ENST00000493919 RRP7BPQ9NSQ0 103 aa16.74■□□□□ 0.27
BRCA1-222ENST00000493919 DHX29Q7Z478 1369 aaKnown RBP16.74■□□□□ 0.27
BRCA1-222ENST00000493919 ANKRD30AQ9BXX3 1397 aa16.74■□□□□ 0.27
BRCA1-222ENST00000493919 ERICH6BQ5W0A0 696 aa16.74■□□□□ 0.27
BRCA1-222ENST00000493919 DUOX2Q9NRD8 1548 aa16.73■□□□□ 0.27
BRCA1-222ENST00000493919 RIMS1Q86UR5 1692 aaKnown RBP16.73■□□□□ 0.27
BRCA1-222ENST00000493919 ADGRL2O95490 1459 aa16.73■□□□□ 0.27
BRCA1-222ENST00000493919 NCOA1Q15788 1441 aa16.71■□□□□ 0.27
BRCA1-222ENST00000493919 KIF3BO15066 747 aa16.7■□□□□ 0.26
BRCA1-222ENST00000493919 GGT6Q6P531 493 aa16.7■□□□□ 0.26
BRCA1-222ENST00000493919 EIF2AK4Q9P2K8 1649 aaKnown RBP16.7■□□□□ 0.26
BRCA1-222ENST00000493919 NEUROD1Q13562 356 aa16.68■□□□□ 0.26
BRCA1-222ENST00000493919 ERBINQ96RT1 1412 aa16.68■□□□□ 0.26
BRCA1-222ENST00000493919 AEBP2Q6ZN18 517 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-222ENST00000493919 ESF1Q9H501 851 aaKnown RBP16.67■□□□□ 0.26
BRCA1-222ENST00000493919 AMER1Q5JTC6 1135 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-222ENST00000493919 ROCK1Q13464 1354 aa16.66■□□□□ 0.26
BRCA1-222ENST00000493919 RNF17Q9BXT8 1623 aaKnown RBP16.66■□□□□ 0.26
BRCA1-222ENST00000493919 PTPRMP28827 1452 aa16.65■□□□□ 0.26
BRCA1-222ENST00000493919 CLTCQ00610 1675 aaKnown RBP16.65■□□□□ 0.26
BRCA1-222ENST00000493919 ANKRD50Q9ULJ7 1429 aa16.64■□□□□ 0.25
BRCA1-222ENST00000493919 PDE4CQ08493 712 aa16.63■□□□□ 0.25
BRCA1-222ENST00000493919 MROH1Q8NDA8 1641 aa16.62■□□□□ 0.25
BRCA1-222ENST00000493919 KDM5DQ9BY66 1539 aa16.62■□□□□ 0.25
BRCA1-222ENST00000493919 CNTLNQ9NXG0 1405 aa16.61■□□□□ 0.25
BRCA1-222ENST00000493919 GCC2Q8IWJ2 1684 aa16.61■□□□□ 0.25
BRCA1-222ENST00000493919 DEPDC5O75140 1603 aa16.6■□□□□ 0.25
BRCA1-222ENST00000493919 PRDM15P57071 1507 aaPredicted RBP16.6■□□□□ 0.25
BRCA1-222ENST00000493919 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.251e-6■■■□□ 18.6
BRCA1-222ENST00000493919 MROH2AA6NES4 1674 aa16.6■□□□□ 0.25
BRCA1-222ENST00000493919 C3P01024 1663 aa16.6■□□□□ 0.25
BRCA1-222ENST00000493919 CEP152O94986 1710 aa16.59■□□□□ 0.25
BRCA1-222ENST00000493919 WASHC2CQ9Y4E1 1318 aa16.58■□□□□ 0.25
BRCA1-222ENST00000493919 ZC3H13Q5T200 1668 aaKnown RBP16.58■□□□□ 0.25
BRCA1-222ENST00000493919 FAM135AQ9P2D6 1515 aa16.57■□□□□ 0.24
BRCA1-222ENST00000493919 CEBPAP49715 358 aaPredicted RBP16.57■□□□□ 0.24
BRCA1-222ENST00000493919 ABCC3O15438 1527 aa16.57■□□□□ 0.24
BRCA1-222ENST00000493919 TULP1O00294 542 aaPredicted RBP16.57■□□□□ 0.24
BRCA1-222ENST00000493919 NAIPQ13075 1403 aa16.56■□□□□ 0.24
BRCA1-222ENST00000493919 HFM1A2PYH4 1435 aa16.55■□□□□ 0.24
BRCA1-222ENST00000493919 UNC13BO14795 1591 aa16.55■□□□□ 0.24
BRCA1-222ENST00000493919 KANK1Q14678 1352 aa16.55■□□□□ 0.24
BRCA1-222ENST00000493919 PPP6R1Q9UPN7 881 aa16.55■□□□□ 0.24
BRCA1-222ENST00000493919 CAMSAP1Q5T5Y3 1602 aa16.54■□□□□ 0.24
BRCA1-222ENST00000493919 ZMYM3Q14202 1370 aa16.54■□□□□ 0.24
BRCA1-222ENST00000493919 VWDEQ8N2E2 1590 aa16.5■□□□□ 0.23
BRCA1-222ENST00000493919 PZPP20742 1482 aa16.49■□□□□ 0.23
BRCA1-222ENST00000493919 IQGAP3Q86VI3 1631 aa16.48■□□□□ 0.23
BRCA1-222ENST00000493919 NUP155O75694 1391 aa16.48■□□□□ 0.23
BRCA1-222ENST00000493919 PREX1Q8TCU6 1659 aa16.48■□□□□ 0.23
BRCA1-222ENST00000493919 EFCAB6Q5THR3 1501 aa16.47■□□□□ 0.23
BRCA1-222ENST00000493919 LMTK2Q8IWU2 1503 aa16.47■□□□□ 0.23
BRCA1-222ENST00000493919 NPATQ14207 1427 aa16.46■□□□□ 0.23
BRCA1-222ENST00000493919 TET3O43151 1660 aa16.46■□□□□ 0.23
BRCA1-222ENST00000493919 CFAP65Q6ZU64 1925 aaKnown RBP16.45■□□□□ 0.22
BRCA1-222ENST00000493919 MYO3AQ8NEV4 1616 aa16.45■□□□□ 0.22
BRCA1-222ENST00000493919 FBXO31Q5XUX0 539 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-222ENST00000493919 TRIM52Q96A61 297 aa16.45■□□□□ 0.22
BRCA1-222ENST00000493919 UHRF1BP1Q6BDS2 1440 aa16.45■□□□□ 0.22
BRCA1-222ENST00000493919 TAF7LQ5H9L4 462 aa16.44■□□□□ 0.22
BRCA1-222ENST00000493919 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
BRCA1-222ENST00000493919 ERVK-7P63135 1459 aa16.43■□□□□ 0.22
BRCA1-222ENST00000493919 LMTK3Q96Q04 1460 aa16.43■□□□□ 0.22
BRCA1-222ENST00000493919 TNRQ92752 1358 aa16.42■□□□□ 0.22
BRCA1-222ENST00000493919 SPATA31D1Q6ZQQ2 1576 aa16.42■□□□□ 0.22
BRCA1-222ENST00000493919 ARHGAP31Q2M1Z3 1444 aa16.42■□□□□ 0.22
BRCA1-222ENST00000493919 E9PCH4 1651 aa16.41■□□□□ 0.22
BRCA1-222ENST00000493919 RAB3GAP2Q9H2M9 1393 aa16.41■□□□□ 0.22
BRCA1-222ENST00000493919 SETD1BQ9UPS6 1966 aaKnown RBP16.41■□□□□ 0.22
BRCA1-222ENST00000493919 SALL2Q9Y467 1007 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-222ENST00000493919 FGD1P98174 961 aa16.39■□□□□ 0.21
BRCA1-222ENST00000493919 CEP170BQ9Y4F5 1589 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-222ENST00000493919 ZNF142P52746 1687 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-222ENST00000493919 RPRD2Q5VT52 1461 aaKnown RBP16.38■□□□□ 0.21
BRCA1-222ENST00000493919 TRIM26Q12899 539 aaPredicted RBP16.38■□□□□ 0.21
BRCA1-222ENST00000493919 HSPA2P54652 639 aa16.37■□□□□ 0.21
BRCA1-222ENST00000493919 SYNMO15061 1565 aa16.36■□□□□ 0.21
BRCA1-222ENST00000493919 SLC4A1APQ9BWU0 796 aaKnown RBP16.35■□□□□ 0.21
BRCA1-222ENST00000493919 NLRP1Q9C000 1473 aa16.35■□□□□ 0.21
BRCA1-222ENST00000493919 A2ML1A8K2U0 1454 aa16.33■□□□□ 0.21
BRCA1-222ENST00000493919 NPM2Q86SE8 214 aaKnown RBP16.33■□□□□ 0.21
BRCA1-222ENST00000493919 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.21
BRCA1-222ENST00000493919 NOS1P29475 1434 aa16.33■□□□□ 0.21
BRCA1-222ENST00000493919 SPHKAPQ2M3C7 1700 aa16.33■□□□□ 0.2
BRCA1-222ENST00000493919 UGGT1Q9NYU2 1555 aa16.32■□□□□ 0.2
BRCA1-222ENST00000493919 PKD2Q13563 968 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms