RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 NISCHQ9Y2I1 1504 aa26.38■■□□□ 1.81
BRCA1-222ENST00000493919 CCDC180Q9P1Z9 1646 aa23.4■■□□□ 1.34
BRCA1-222ENST00000493919 ABCC9O60706 1549 aa22.79■■□□□ 1.24
BRCA1-222ENST00000493919 DCAF8L2P0C7V8 631 aa22.04■■□□□ 1.12
BRCA1-222ENST00000493919 ZCCHC6Q5VYS8 1495 aaKnown RBP22.03■■□□□ 1.12
BRCA1-222ENST00000493919 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.1
BRCA1-222ENST00000493919 NACADO15069 1562 aa21.94■■□□□ 1.1
BRCA1-222ENST00000493919 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
BRCA1-222ENST00000493919 DCAF1Q9Y4B6 1507 aa21.79■■□□□ 1.08
BRCA1-222ENST00000493919 UNC13AQ9UPW8 1703 aa21.49■■□□□ 1.03
BRCA1-222ENST00000493919 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
BRCA1-222ENST00000493919 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 1
BRCA1-222ENST00000493919 BICRAQ9NZM4 1560 aa21.26■□□□□ 0.99
BRCA1-222ENST00000493919 SHROOM4Q9ULL8 1493 aa21.03■□□□□ 0.96
BRCA1-222ENST00000493919 MYT1Q01538 1121 aa20.87■□□□□ 0.93
BRCA1-222ENST00000493919 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
BRCA1-222ENST00000493919 EIF4G1Q04637 1599 aaKnown RBP20.72■□□□□ 0.91
BRCA1-222ENST00000493919 DNAJC5BQ9UF47 199 aa20.68■□□□□ 0.9
BRCA1-222ENST00000493919 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
BRCA1-222ENST00000493919 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
BRCA1-222ENST00000493919 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
BRCA1-222ENST00000493919 BAZ1AQ9NRL2 1556 aaPredicted RBP20.46■□□□□ 0.87
BRCA1-222ENST00000493919 MROH2BQ7Z745 1585 aa20.35■□□□□ 0.85
BRCA1-222ENST00000493919 TTBK1Q5TCY1 1321 aaPredicted RBP20.35■□□□□ 0.85
BRCA1-222ENST00000493919 ATAD2BQ9ULI0 1458 aa20.28■□□□□ 0.84
BRCA1-222ENST00000493919 SMARCA2P51531 1590 aa20.28■□□□□ 0.84
BRCA1-222ENST00000493919 PEG3Q9GZU2 1588 aa20.21■□□□□ 0.83
BRCA1-222ENST00000493919 NCAPD3P42695 1498 aa20.21■□□□□ 0.83
BRCA1-222ENST00000493919 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
BRCA1-222ENST00000493919 WIZO95785 1651 aa20.17■□□□□ 0.82
BRCA1-222ENST00000493919 BAZ1BQ9UIG0 1483 aaKnown RBP20.17■□□□□ 0.82
BRCA1-222ENST00000493919 RSF1Q96T23 1441 aaPredicted RBP20.15■□□□□ 0.82
BRCA1-222ENST00000493919 SLC24A1O60721 1099 aa19.98■□□□□ 0.79
BRCA1-222ENST00000493919 TOP2AP11388 1531 aaKnown RBP19.95■□□□□ 0.78
BRCA1-222ENST00000493919 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
BRCA1-222ENST00000493919 NESP48681 1621 aa19.76■□□□□ 0.75
BRCA1-222ENST00000493919 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
BRCA1-222ENST00000493919 CCDC88BA6NC98 1476 aa19.69■□□□□ 0.74
BRCA1-222ENST00000493919 CADPSQ9ULU8 1353 aa19.65■□□□□ 0.74
BRCA1-222ENST00000493919 ERCC6Q03468 1493 aa19.64■□□□□ 0.74
BRCA1-222ENST00000493919 CFTRP13569 1480 aa19.57■□□□□ 0.72
BRCA1-222ENST00000493919 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
BRCA1-222ENST00000493919 PDS5BQ9NTI5 1447 aa19.55■□□□□ 0.72
BRCA1-222ENST00000493919 PRDM2Q13029 1718 aa19.5■□□□□ 0.71
BRCA1-222ENST00000493919 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
BRCA1-222ENST00000493919 CEP164Q9UPV0 1460 aa19.45■□□□□ 0.7
BRCA1-222ENST00000493919 THOC2Q8NI27 1593 aaKnown RBP19.43■□□□□ 0.7
BRCA1-222ENST00000493919 ERICH6Q7L0X2 663 aa19.39■□□□□ 0.69
BRCA1-222ENST00000493919 MRC2Q9UBG0 1479 aa19.36■□□□□ 0.69
BRCA1-222ENST00000493919 PRKCSHP14314 528 aaPredicted RBP19.33■□□□□ 0.69
BRCA1-222ENST00000493919 CUX2O14529 1486 aa19.31■□□□□ 0.68
BRCA1-222ENST00000493919 WDR62O43379 1518 aa19.29■□□□□ 0.68
BRCA1-222ENST00000493919 APLP2Q06481 763 aa19.29■□□□□ 0.68
BRCA1-222ENST00000493919 URB2Q14146 1524 aaKnown RBP19.26■□□□□ 0.67
BRCA1-222ENST00000493919 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
BRCA1-222ENST00000493919 DNMBPQ6XZF7 1577 aa19.17■□□□□ 0.66
BRCA1-222ENST00000493919 ABCC8Q09428 1581 aa19.13■□□□□ 0.65
BRCA1-222ENST00000493919 CUX1P39880 1505 aa19.09■□□□□ 0.65
BRCA1-222ENST00000493919 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
BRCA1-222ENST00000493919 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.64
BRCA1-222ENST00000493919 FGD5Q6ZNL6 1462 aa19.01■□□□□ 0.63
BRCA1-222ENST00000493919 SYNJ1O43426 1573 aa19■□□□□ 0.63
BRCA1-222ENST00000493919 IFT140Q96RY7 1462 aa19■□□□□ 0.63
BRCA1-222ENST00000493919 DAXXQ9UER7 740 aaPredicted RBP18.99■□□□□ 0.63
BRCA1-222ENST00000493919 BIVM-ERCC5R4GMW8 1640 aa18.97■□□□□ 0.63
BRCA1-222ENST00000493919 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
BRCA1-222ENST00000493919 RAD54L2Q9Y4B4 1467 aa18.95■□□□□ 0.62
BRCA1-222ENST00000493919 TARBP1Q13395 1621 aaKnown RBP18.95■□□□□ 0.62
BRCA1-222ENST00000493919 SOGA1O94964 1423 aa18.93■□□□□ 0.62
BRCA1-222ENST00000493919 ZNF608Q9ULD9 1512 aaPredicted RBP18.92■□□□□ 0.62
BRCA1-222ENST00000493919 EIF4G3O43432 1585 aaKnown RBP18.89■□□□□ 0.61
BRCA1-222ENST00000493919 WDR97A6NE52 1622 aa18.86■□□□□ 0.61
BRCA1-222ENST00000493919 AQRO60306 1485 aaKnown RBP eCLIP18.83■□□□□ 0.61
BRCA1-222ENST00000493919 TDRD9Q8NDG6 1382 aaKnown RBP18.82■□□□□ 0.6
BRCA1-222ENST00000493919 ABCA10Q8WWZ4 1543 aa18.8■□□□□ 0.6
BRCA1-222ENST00000493919 ABCA5Q8WWZ7 1642 aa18.75■□□□□ 0.59
BRCA1-222ENST00000493919 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
BRCA1-222ENST00000493919 GAPVD1Q14C86 1478 aa18.73■□□□□ 0.59
BRCA1-222ENST00000493919 GRIN2BQ13224 1484 aa18.69■□□□□ 0.58
BRCA1-222ENST00000493919 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
BRCA1-222ENST00000493919 SNAPC4Q5SXM2 1469 aa18.69■□□□□ 0.58
BRCA1-222ENST00000493919 CHD1O14646 1710 aa18.63■□□□□ 0.57
BRCA1-222ENST00000493919 MAGI1Q96QZ7 1491 aaPredicted RBP18.62■□□□□ 0.57
BRCA1-222ENST00000493919 FBLN2P98095 1184 aa18.61■□□□□ 0.57
BRCA1-222ENST00000493919 KIF27Q86VH2 1401 aa18.61■□□□□ 0.57
BRCA1-222ENST00000493919 ERICH3Q5RHP9 1530 aa18.58■□□□□ 0.57
BRCA1-222ENST00000493919 ADAMTS12P58397 1594 aa18.57■□□□□ 0.56
BRCA1-222ENST00000493919 SYNJ2O15056 1496 aa18.56■□□□□ 0.56
BRCA1-222ENST00000493919 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
BRCA1-222ENST00000493919 CHMP7Q8WUX9 453 aaPredicted RBP18.54■□□□□ 0.56
BRCA1-222ENST00000493919 OSCARQ8IYS5 282 aa18.51■□□□□ 0.55
BRCA1-222ENST00000493919 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
BRCA1-222ENST00000493919 FHAD1B1AJZ9 1412 aa18.5■□□□□ 0.55
BRCA1-222ENST00000493919 CUL7Q14999 1698 aa18.48■□□□□ 0.55
BRCA1-222ENST00000493919 DNAJC5Q9H3Z4 198 aa18.48■□□□□ 0.55
BRCA1-222ENST00000493919 GRIN2AQ12879 1464 aa18.47■□□□□ 0.55
BRCA1-222ENST00000493919 IGF1RP08069 1367 aa18.47■□□□□ 0.55
BRCA1-222ENST00000493919 BCL11AQ9H165 835 aa18.44■□□□□ 0.54
BRCA1-222ENST00000493919 CARMIL1Q5VZK9 1371 aa18.39■□□□□ 0.54
BRCA1-222ENST00000493919 CEP170Q5SW79 1584 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms