RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 MROH2AA6NES4 1674 aa24.88■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 PLPPR3Q6T4P5 718 aa24.88■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 PPP6R1Q9UPN7 881 aa24.88■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 CLTCQ00610 1675 aaKnown RBP24.88■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 C3P01024 1663 aa24.86■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 FAM135AQ9P2D6 1515 aa24.86■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 KDM5DQ9BY66 1539 aa24.84■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 ITGAEP38570 1179 aa24.83■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 CEBPAP49715 358 aaPredicted RBP24.83■■□□□ 1.57
MSH5-SAPCD1-206ENST00000491552 ROCK1Q13464 1354 aa24.82■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 MROH1Q8NDA8 1641 aa24.81■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 ZMYM3Q14202 1370 aa24.8■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 ZC3H13Q5T200 1668 aaKnown RBP24.78■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 PRDM15P57071 1507 aaPredicted RBP24.77■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 DEPDC5O75140 1603 aa24.77■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 WASHC2CQ9Y4E1 1318 aa24.77■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 ANKRD50Q9ULJ7 1429 aa24.77■■□□□ 1.56
MSH5-SAPCD1-206ENST00000491552 ABCC3O15438 1527 aa24.75■■□□□ 1.55
MSH5-SAPCD1-206ENST00000491552 PREX1Q8TCU6 1659 aa24.72■■□□□ 1.55
MSH5-SAPCD1-206ENST00000491552 LMTK3Q96Q04 1460 aa24.72■■□□□ 1.55
MSH5-SAPCD1-206ENST00000491552 NPATQ14207 1427 aa24.72■■□□□ 1.55
MSH5-SAPCD1-206ENST00000491552 CEP152O94986 1710 aa24.71■■□□□ 1.55
MSH5-SAPCD1-206ENST00000491552 PZPP20742 1482 aa24.69■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 KANK1Q14678 1352 aa24.68■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.68■■□□□ 1.542e-10■■□□□ 13
MSH5-SAPCD1-206ENST00000491552 UHRF1BP1Q6BDS2 1440 aa24.68■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 CAMSAP1Q5T5Y3 1602 aa24.68■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 VWDEQ8N2E2 1590 aa24.67■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 SETD1BQ9UPS6 1966 aaKnown RBP24.65■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 UNC13BO14795 1591 aa24.64■■□□□ 1.54
MSH5-SAPCD1-206ENST00000491552 GCC2Q8IWJ2 1684 aa24.63■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 LMTK2Q8IWU2 1503 aa24.63■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 MYO3AQ8NEV4 1616 aa24.61■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 NAIPQ13075 1403 aa24.61■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 HFM1A2PYH4 1435 aa24.6■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 ARHGAP31Q2M1Z3 1444 aa24.6■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 FBXO31Q5XUX0 539 aaPredicted RBP24.59■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 TNRQ92752 1358 aa24.58■■□□□ 1.53
MSH5-SAPCD1-206ENST00000491552 SPATA31D1Q6ZQQ2 1576 aa24.57■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 ERVK-7P63135 1459 aa24.57■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 ZNF142P52746 1687 aaPredicted RBP24.56■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 EFCAB6Q5THR3 1501 aa24.56■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 HSPA2P54652 639 aa24.56■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 CEP170BQ9Y4F5 1589 aaPredicted RBP24.54■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 IQGAP3Q86VI3 1631 aa24.54■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 TET3O43151 1660 aa24.53■■□□□ 1.52
MSH5-SAPCD1-206ENST00000491552 NUP155O75694 1391 aa24.51■■□□□ 1.51
MSH5-SAPCD1-206ENST00000491552 A2ML1A8K2U0 1454 aa24.51■■□□□ 1.51
MSH5-SAPCD1-206ENST00000491552 NLRP1Q9C000 1473 aa24.51■■□□□ 1.51
MSH5-SAPCD1-206ENST00000491552 RPRD2Q5VT52 1461 aaKnown RBP24.48■■□□□ 1.51
MSH5-SAPCD1-206ENST00000491552 CFAP65Q6ZU64 1925 aaKnown RBP24.47■■□□□ 1.51
MSH5-SAPCD1-206ENST00000491552 E9PCH4 1651 aa24.43■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 NOS1P29475 1434 aa24.43■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 UGGT1Q9NYU2 1555 aa24.42■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 SYNMO15061 1565 aa24.41■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 PLA2R1Q13018 1463 aa24.4■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 STRCQ7RTU9 1775 aa24.4■■□□□ 1.5
MSH5-SAPCD1-206ENST00000491552 TRIM52Q96A61 297 aa24.38■■□□□ 1.49
MSH5-SAPCD1-206ENST00000491552 SETD5Q9C0A6 1442 aa24.37■■□□□ 1.49
MSH5-SAPCD1-206ENST00000491552 UBR1Q8IWV7 1749 aa24.35■■□□□ 1.49
MSH5-SAPCD1-206ENST00000491552 PIK3C2BO00750 1634 aa24.35■■□□□ 1.49
MSH5-SAPCD1-206ENST00000491552 THEMISQ8N1K5 641 aaPredicted RBP24.34■■□□□ 1.49
MSH5-SAPCD1-206ENST00000491552 IDI1Q13907 227 aa24.31■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 SLC52A1Q9NWF4 448 aa24.31■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 KDM5AP29375 1690 aaKnown RBP24.3■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 PKD2Q13563 968 aa24.3■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 DMRT2Q9Y5R5 561 aa24.3■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 NCKAP5LQ9HCH0 1330 aa24.3■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 RAB3GAP2Q9H2M9 1393 aa24.29■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 POLR1AO95602 1720 aaPredicted RBP24.29■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 SPHKAPQ2M3C7 1700 aa24.29■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 ADGRB3O60242 1522 aa24.29■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 ACIN1Q9UKV3 1341 aaKnown RBP24.29■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 PTPRTO14522 1441 aa24.28■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 SLC4A1APQ9BWU0 796 aaKnown RBP24.27■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 STAG3Q9UJ98 1225 aa24.27■■□□□ 1.48
MSH5-SAPCD1-206ENST00000491552 ANKLE2Q86XL3 938 aa24.24■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 ARHGAP23Q9P227 1491 aa24.24■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 SLIT1O75093 1534 aa24.24■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 NEURL4Q96JN8 1562 aa24.24■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 TRPM2O94759 1503 aa24.22■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 TMEM131LA2VDJ0 1609 aa24.21■■□□□ 1.47
MSH5-SAPCD1-206ENST00000491552 TMEM2Q9UHN6 1383 aa24.2■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 MPHOSPH9Q99550 1183 aa24.19■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 MED14O60244 1454 aa24.19■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 SCAF11Q99590 1463 aaKnown RBP24.19■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 CLTCL1P53675 1640 aa24.17■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 MYO5BQ9ULV0 1848 aa24.17■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 NPHP4O75161 1426 aaPredicted RBP24.17■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 CHGAP10645 457 aaKnown RBP24.16■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 HRCP23327 699 aa24.16■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 IQGAP1P46940 1657 aa24.15■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 EID1Q9Y6B2 187 aa24.15■■□□□ 1.46
MSH5-SAPCD1-206ENST00000491552 TXNDC2Q86VQ3 553 aa24.14■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 LTKP29376 864 aa24.13■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 FOXD1Q16676 465 aa24.13■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 ZFYVE9O95405 1425 aa24.1■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 RIMS2Q9UQ26 1411 aa24.1■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 KIF1BO60333 1816 aa24.08■■□□□ 1.45
MSH5-SAPCD1-206ENST00000491552 TRIM26Q12899 539 aaPredicted RBP24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms