RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 ABCC5O15440 1437 aa13.99□□□□□ -0.17
HDAC6-232ENST00000489053 DAPK1P53355 1430 aa13.99□□□□□ -0.17
HDAC6-232ENST00000489053 DUOX2Q9NRD8 1548 aa13.99□□□□□ -0.17
HDAC6-232ENST00000489053 FAM135AQ9P2D6 1515 aa13.99□□□□□ -0.17
HDAC6-232ENST00000489053 PPARGC1BQ86YN6 1023 aaKnown RBP13.98□□□□□ -0.17
HDAC6-232ENST00000489053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.98□□□□□ -0.17
HDAC6-232ENST00000489053 TCOF1Q13428 1488 aaKnown RBP13.98□□□□□ -0.17
HDAC6-232ENST00000489053 KANK1Q14678 1352 aa13.97□□□□□ -0.17
HDAC6-232ENST00000489053 SETD1BQ9UPS6 1966 aaKnown RBP13.97□□□□□ -0.17
HDAC6-232ENST00000489053 PTPRKQ15262 1439 aa13.97□□□□□ -0.17
HDAC6-232ENST00000489053 ERBINQ96RT1 1412 aa13.96□□□□□ -0.18
HDAC6-232ENST00000489053 TNRQ92752 1358 aa13.96□□□□□ -0.18
HDAC6-232ENST00000489053 DNMT1P26358 1616 aaKnown RBP13.95□□□□□ -0.18
HDAC6-232ENST00000489053 PZPP20742 1482 aa13.93□□□□□ -0.18
HDAC6-232ENST00000489053 ITGAEP38570 1179 aa13.93□□□□□ -0.18
HDAC6-232ENST00000489053 FBXO31Q5XUX0 539 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-232ENST00000489053 ILDR1Q86SU0 546 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-232ENST00000489053 EIF2AK4Q9P2K8 1649 aaKnown RBP13.93□□□□□ -0.18
HDAC6-232ENST00000489053 CROCC2H7BZ55 1655 aa13.91□□□□□ -0.18
HDAC6-232ENST00000489053 MYO3AQ8NEV4 1616 aa13.9□□□□□ -0.18
HDAC6-232ENST00000489053 RNF17Q9BXT8 1623 aaKnown RBP13.9□□□□□ -0.18
HDAC6-232ENST00000489053 PKD2Q13563 968 aa13.9□□□□□ -0.18
HDAC6-232ENST00000489053 A2ML1A8K2U0 1454 aa13.9□□□□□ -0.18
HDAC6-232ENST00000489053 CEP170BQ9Y4F5 1589 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-232ENST00000489053 CAMSAP1Q5T5Y3 1602 aa13.9□□□□□ -0.19
HDAC6-232ENST00000489053 ABCC3O15438 1527 aa13.9□□□□□ -0.19
HDAC6-232ENST00000489053 NCOA1Q15788 1441 aa13.9□□□□□ -0.19
HDAC6-232ENST00000489053 THEMISQ8N1K5 641 aaPredicted RBP13.89□□□□□ -0.19
HDAC6-232ENST00000489053 FBXO41Q8TF61 875 aa13.89□□□□□ -0.19
HDAC6-232ENST00000489053 NCKAP5LQ9HCH0 1330 aa13.89□□□□□ -0.19
HDAC6-232ENST00000489053 PTPRTO14522 1441 aa13.88□□□□□ -0.19
HDAC6-232ENST00000489053 ZC3H13Q5T200 1668 aaKnown RBP13.88□□□□□ -0.19
HDAC6-232ENST00000489053 NLRP1Q9C000 1473 aa13.87□□□□□ -0.19
HDAC6-232ENST00000489053 CERKQ8TCT0 537 aa13.87□□□□□ -0.19
HDAC6-232ENST00000489053 STAG3Q9UJ98 1225 aa13.87□□□□□ -0.19
HDAC6-232ENST00000489053 ANKLE2Q86XL3 938 aa13.86□□□□□ -0.19
HDAC6-232ENST00000489053 ANKRD50Q9ULJ7 1429 aa13.86□□□□□ -0.19
HDAC6-232ENST00000489053 ADGRL2O95490 1459 aa13.86□□□□□ -0.19
HDAC6-232ENST00000489053 PLA2R1Q13018 1463 aa13.86□□□□□ -0.19
HDAC6-232ENST00000489053 ZNF142P52746 1687 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-232ENST00000489053 PRDM15P57071 1507 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-232ENST00000489053 ERVK-7P63135 1459 aa13.84□□□□□ -0.19
HDAC6-232ENST00000489053 UGGT1Q9NYU2 1555 aa13.83□□□□□ -0.2
HDAC6-232ENST00000489053 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.83□□□□□ -0.2
HDAC6-232ENST00000489053 ROCK1Q13464 1354 aa13.82□□□□□ -0.2
HDAC6-232ENST00000489053 STRCQ7RTU9 1775 aa13.81□□□□□ -0.2
HDAC6-232ENST00000489053 MROH1Q8NDA8 1641 aa13.81□□□□□ -0.2
HDAC6-232ENST00000489053 ARHGAP31Q2M1Z3 1444 aa13.81□□□□□ -0.2
HDAC6-232ENST00000489053 EID1Q9Y6B2 187 aa13.8□□□□□ -0.2
HDAC6-232ENST00000489053 CEP152O94986 1710 aa13.8□□□□□ -0.2
HDAC6-232ENST00000489053 SPATA31D1Q6ZQQ2 1576 aa13.79□□□□□ -0.2
HDAC6-232ENST00000489053 DEPDC5O75140 1603 aa13.78□□□□□ -0.2
HDAC6-232ENST00000489053 LMTK2Q8IWU2 1503 aa13.76□□□□□ -0.21
HDAC6-232ENST00000489053 ZNF335Q9H4Z2 1342 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-232ENST00000489053 NPHP4O75161 1426 aaPredicted RBP13.75□□□□□ -0.21
HDAC6-232ENST00000489053 NUP155O75694 1391 aa13.75□□□□□ -0.21
HDAC6-232ENST00000489053 BCANQ96GW7 911 aa13.75□□□□□ -0.21
HDAC6-232ENST00000489053 SLC52A1Q9NWF4 448 aa13.75□□□□□ -0.21
HDAC6-232ENST00000489053 TXNDC2Q86VQ3 553 aa13.74□□□□□ -0.21
HDAC6-232ENST00000489053 EFCAB6Q5THR3 1501 aa13.74□□□□□ -0.21
HDAC6-232ENST00000489053 RRBP1Q9P2E9 1410 aaKnown RBP13.73□□□□□ -0.21
HDAC6-232ENST00000489053 CHGAP10645 457 aaKnown RBP13.73□□□□□ -0.21
HDAC6-232ENST00000489053 RPRD2Q5VT52 1461 aaKnown RBP13.73□□□□□ -0.21
HDAC6-232ENST00000489053 PPP1R15AO75807 674 aaPredicted RBP13.72□□□□□ -0.21
HDAC6-232ENST00000489053 IDI1Q13907 227 aa13.72□□□□□ -0.21
HDAC6-232ENST00000489053 VWDEQ8N2E2 1590 aa13.71□□□□□ -0.21
HDAC6-232ENST00000489053 HDGFP51858 240 aaKnown RBP13.71□□□□□ -0.21
HDAC6-232ENST00000489053 SCAF11Q99590 1463 aaKnown RBP13.71□□□□□ -0.21
HDAC6-232ENST00000489053 POLR1AO95602 1720 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-232ENST00000489053 UBAP1LF5GYI3 381 aa13.7□□□□□ -0.22
HDAC6-232ENST00000489053 TRIM52Q96A61 297 aa13.7□□□□□ -0.22
HDAC6-232ENST00000489053 CFAP65Q6ZU64 1925 aaKnown RBP13.7□□□□□ -0.22
HDAC6-232ENST00000489053 SCAF1Q9H7N4 1312 aaKnown RBP13.69□□□□□ -0.22
HDAC6-232ENST00000489053 UNC13BO14795 1591 aa13.69□□□□□ -0.22
HDAC6-232ENST00000489053 TMEM2Q9UHN6 1383 aa13.69□□□□□ -0.22
HDAC6-232ENST00000489053 LTBP4Q8N2S1 1624 aa13.68□□□□□ -0.22
HDAC6-232ENST00000489053 IQSEC2Q5JU85 1478 aa13.68□□□□□ -0.22
HDAC6-232ENST00000489053 NOS1P29475 1434 aa13.68□□□□□ -0.22
HDAC6-232ENST00000489053 TET3O43151 1660 aa13.68□□□□□ -0.22
HDAC6-232ENST00000489053 MED14O60244 1454 aa13.67□□□□□ -0.22
HDAC6-232ENST00000489053 NEURL4Q96JN8 1562 aa13.67□□□□□ -0.22
HDAC6-232ENST00000489053 CPS1P31327 1500 aa13.67□□□□□ -0.22
HDAC6-232ENST00000489053 PIK3C2BO00750 1634 aa13.66□□□□□ -0.22
HDAC6-232ENST00000489053 LTKP29376 864 aa13.66□□□□□ -0.22
HDAC6-232ENST00000489053 UBR1Q8IWV7 1749 aa13.66□□□□□ -0.22
HDAC6-232ENST00000489053 IQGAP1P46940 1657 aa13.66□□□□□ -0.22
HDAC6-232ENST00000489053 ADGRB3O60242 1522 aa13.65□□□□□ -0.22
HDAC6-232ENST00000489053 SLIT1O75093 1534 aa13.65□□□□□ -0.22
HDAC6-232ENST00000489053 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.65□□□□□ -0.22
HDAC6-232ENST00000489053 SYNMO15061 1565 aa13.65□□□□□ -0.22
HDAC6-232ENST00000489053 ARHGAP23Q9P227 1491 aa13.64□□□□□ -0.23
HDAC6-232ENST00000489053 TOM1O60784 492 aa13.64□□□□□ -0.23
HDAC6-232ENST00000489053 IQGAP3Q86VI3 1631 aa13.64□□□□□ -0.23
HDAC6-232ENST00000489053 GCC2Q8IWJ2 1684 aa13.63□□□□□ -0.23
HDAC6-232ENST00000489053 ZNF326Q5BKZ1 582 aaKnown RBP13.63□□□□□ -0.23
HDAC6-232ENST00000489053 SENP3Q9H4L4 574 aaPredicted RBP13.63□□□□□ -0.23
HDAC6-232ENST00000489053 HFM1A2PYH4 1435 aa13.63□□□□□ -0.23
HDAC6-232ENST00000489053 NAIPQ13075 1403 aa13.63□□□□□ -0.23
HDAC6-232ENST00000489053 PIP4K2BP78356 416 aa13.62□□□□□ -0.23
HDAC6-232ENST00000489053 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms