RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 GZF1Q9H116 711 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-209ENST00000487188 CARD11Q9BXL7 1154 aa8.06□□□□□ -1.12
VPS13D-209ENST00000487188 BRD4O60885 1362 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-209ENST00000487188 CDCA7LQ96GN5 454 aa8.06□□□□□ -1.12
VPS13D-209ENST00000487188 PODXL2Q9NZ53 605 aa8.05□□□□□ -1.12
VPS13D-209ENST00000487188 NLRP13Q86W25 1043 aa8.05□□□□□ -1.12
VPS13D-209ENST00000487188 DHX29Q7Z478 1369 aaKnown RBP8.05□□□□□ -1.12
VPS13D-209ENST00000487188 ARID3CA6NKF2 412 aa8.05□□□□□ -1.12
VPS13D-209ENST00000487188 ERCC6L2Q5T890 1561 aa8.04□□□□□ -1.12
VPS13D-209ENST00000487188 CANXP27824 592 aaKnown RBP8.04□□□□□ -1.12
VPS13D-209ENST00000487188 CHMP7Q8WUX9 453 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-209ENST00000487188 MIA2Q96PC5 1412 aa8.04□□□□□ -1.12
VPS13D-209ENST00000487188 KDM2AQ9Y2K7 1162 aa8.03□□□□□ -1.12
VPS13D-209ENST00000487188 FBLN2P98095 1184 aa8.03□□□□□ -1.12
VPS13D-209ENST00000487188 EFCAB5A4FU69 1503 aa8.02□□□□□ -1.12
VPS13D-209ENST00000487188 HECW1Q76N89 1606 aa8.02□□□□□ -1.13
VPS13D-209ENST00000487188 SPRYD3Q8NCJ5 442 aa8.02□□□□□ -1.13
VPS13D-209ENST00000487188 WDR43Q15061 677 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS13D-209ENST00000487188 CC2D1BQ5T0F9 858 aaKnown RBP8.01□□□□□ -1.13
VPS13D-209ENST00000487188 C8orf34Q49A92 452 aa8.01□□□□□ -1.13
VPS13D-209ENST00000487188 MYH16Q9H6N6 1097 aa8.01□□□□□ -1.13
VPS13D-209ENST00000487188 RPRD2Q5VT52 1461 aaKnown RBP8.01□□□□□ -1.13
VPS13D-209ENST00000487188 SUPT6HQ7KZ85 1726 aaKnown RBP8.01□□□□□ -1.13
VPS13D-209ENST00000487188 CLCN1P35523 988 aa8□□□□□ -1.13
VPS13D-209ENST00000487188 C20orf194Q5TEA3 1177 aa8□□□□□ -1.13
VPS13D-209ENST00000487188 ANP32BQ92688 251 aaKnown RBP8□□□□□ -1.13
VPS13D-209ENST00000487188 LRPPRCP42704 1394 aaKnown RBP7.99□□□□□ -1.13
VPS13D-209ENST00000487188 ANKRD30BQ9BXX2 1392 aa7.99□□□□□ -1.13
VPS13D-209ENST00000487188 EHBP1L1Q8N3D4 1523 aa7.99□□□□□ -1.13
VPS13D-209ENST00000487188 SPATA31E1Q6ZUB1 1445 aa7.98□□□□□ -1.13
VPS13D-209ENST00000487188 ST20-MTHFSA0A0A6YYL1 179 aa7.98□□□□□ -1.13
VPS13D-209ENST00000487188 XRCC6P12956 609 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS13D-209ENST00000487188 MRE11P49959 708 aa7.97□□□□□ -1.13
VPS13D-209ENST00000487188 TEX14Q8IWB6 1497 aa7.97□□□□□ -1.13
VPS13D-209ENST00000487188 TPM2P07951 284 aa7.97□□□□□ -1.13
VPS13D-209ENST00000487188 PANK2Q9BZ23 570 aa7.97□□□□□ -1.13
VPS13D-209ENST00000487188 KIAA0586Q9BVV6 1533 aa7.97□□□□□ -1.13
VPS13D-209ENST00000487188 ESPNB1AK53 854 aa7.96□□□□□ -1.13
VPS13D-209ENST00000487188 KDM2BQ8NHM5 1336 aa7.96□□□□□ -1.13
VPS13D-209ENST00000487188 MAPK8IP3Q9UPT6 1336 aa7.96□□□□□ -1.14
VPS13D-209ENST00000487188 GCC2Q8IWJ2 1684 aa7.96□□□□□ -1.14
VPS13D-209ENST00000487188 A0A0U1RQG5 324 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-209ENST00000487188 PKD2Q13563 968 aa7.96□□□□□ -1.14
VPS13D-209ENST00000487188 POLR1AO95602 1720 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-209ENST00000487188 GOLGA2Q08379 1002 aa7.95□□□□□ -1.14
VPS13D-209ENST00000487188 TRAK2O60296 914 aa7.95□□□□□ -1.14
VPS13D-209ENST00000487188 MCM4P33991 863 aa7.95□□□□□ -1.14
VPS13D-209ENST00000487188 ZNF777Q9ULD5 760 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-209ENST00000487188 MSNP26038 577 aaKnown RBP7.94□□□□□ -1.14
VPS13D-209ENST00000487188 CYB5RLQ6IPT4 315 aa7.94□□□□□ -1.14
VPS13D-209ENST00000487188 DDX11L8A8MPP1 907 aa7.94□□□□□ -1.14
VPS13D-209ENST00000487188 GRPEL1Q9HAV7 217 aa7.94□□□□□ -1.14
VPS13D-209ENST00000487188 KDM6BO15054 1643 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 DENND4BO75064 1496 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-209ENST00000487188 PRG4Q92954 1404 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-209ENST00000487188 PLEKHG5O94827 1062 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 HSCBQ8IWL3 235 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 ARID3AQ99856 593 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 CHMP5Q9NZZ3 219 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 CTTNBP2Q8WZ74 1663 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 PDCL3Q9H2J4 239 aa7.93□□□□□ -1.14
VPS13D-209ENST00000487188 IQGAP2Q13576 1575 aa7.92□□□□□ -1.14
VPS13D-209ENST00000487188 PLEKHH2Q8IVE3 1493 aa7.92□□□□□ -1.14
VPS13D-209ENST00000487188 UGGT2Q9NYU1 1516 aa7.92□□□□□ -1.14
VPS13D-209ENST00000487188 KIAA1211Q6ZU35 1233 aa7.92□□□□□ -1.14
VPS13D-209ENST00000487188 JPH4Q96JJ6 628 aa7.92□□□□□ -1.14
VPS13D-209ENST00000487188 EIF3AQ14152 1382 aaKnown RBP7.91□□□□□ -1.14
VPS13D-209ENST00000487188 BCORL1Q5H9F3 1711 aa7.91□□□□□ -1.14
VPS13D-209ENST00000487188 DISP1Q96F81 1524 aa7.91□□□□□ -1.14
VPS13D-209ENST00000487188 ADCY10Q96PN6 1610 aa7.91□□□□□ -1.14
VPS13D-209ENST00000487188 CGNL1Q0VF96 1302 aa7.9□□□□□ -1.14
VPS13D-209ENST00000487188 RBM10P98175 930 aaKnown RBP7.9□□□□□ -1.14
VPS13D-209ENST00000487188 TBC1D2Q9BYX2 928 aa7.9□□□□□ -1.14
VPS13D-209ENST00000487188 FAM13BQ9NYF5 915 aa7.9□□□□□ -1.14
VPS13D-209ENST00000487188 TCOF1Q13428 1488 aaKnown RBP7.9□□□□□ -1.14
VPS13D-209ENST00000487188 MFAP1P55081 439 aaKnown RBP7.9□□□□□ -1.14
VPS13D-209ENST00000487188 GBP4Q96PP9 640 aa7.9□□□□□ -1.14
VPS13D-209ENST00000487188 ADAMTS8Q9UP79 889 aa7.9□□□□□ -1.14
VPS13D-209ENST00000487188 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.9□□□□□ -1.15
VPS13D-209ENST00000487188 KNSTRNQ9Y448 316 aa7.9□□□□□ -1.15
VPS13D-209ENST00000487188 KIAA1107Q9UPP5 1409 aa7.9□□□□□ -1.15
VPS13D-209ENST00000487188 GOLGA6L22H0YM25 854 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 ISY1Q9ULR0 285 aaKnown RBP7.89□□□□□ -1.15
VPS13D-209ENST00000487188 PARD3Q8TEW0 1356 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 KIF14Q15058 1648 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 DAPK1P53355 1430 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 SEC24BO95487 1268 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 HSP90AB1P08238 724 aaKnown RBP7.89□□□□□ -1.15
VPS13D-209ENST00000487188 PANK3Q9H999 370 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 COG6Q9Y2V7 657 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 FSD2A1L4K1 749 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 CCDC146Q8IYE0 955 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 PMFBP1Q8TBY8 1022 aa7.89□□□□□ -1.15
VPS13D-209ENST00000487188 ROCK1Q13464 1354 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 DUSP27Q5VZP5 1158 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 CLUAP1Q96AJ1 413 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 RGL3Q3MIN7 710 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 MAP7D2Q96T17 732 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 KIAA0556O60303 1618 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 KIF13AQ9H1H9 1805 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms