RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TCOF1Q13428 1488 aaKnown RBP26.23■■□□□ 1.79
VIM-205ENST00000485947 SHANK2Q9UPX8 1470 aa26.23■■□□□ 1.79
VIM-205ENST00000485947 CLTCQ00610 1675 aaKnown RBP26.22■■□□□ 1.79
VIM-205ENST00000485947 PTPN23Q9H3S7 1636 aa26.21■■□□□ 1.79
VIM-205ENST00000485947 PTPRKQ15262 1439 aa26.21■■□□□ 1.79
VIM-205ENST00000485947 WASHC2CQ9Y4E1 1318 aa26.18■■□□□ 1.78
VIM-205ENST00000485947 ABCC5O15440 1437 aa26.18■■□□□ 1.78
VIM-205ENST00000485947 KDM5DQ9BY66 1539 aa26.18■■□□□ 1.78
VIM-205ENST00000485947 DUOX2Q9NRD8 1548 aa26.16■■□□□ 1.78
VIM-205ENST00000485947 EIF2AK4Q9P2K8 1649 aaKnown RBP26.16■■□□□ 1.78
VIM-205ENST00000485947 DAPK1P53355 1430 aa26.14■■□□□ 1.78
VIM-205ENST00000485947 DNMT1P26358 1616 aaKnown RBP26.13■■□□□ 1.77
VIM-205ENST00000485947 RNF17Q9BXT8 1623 aaKnown RBP26.12■■□□□ 1.77
VIM-205ENST00000485947 PTPRTO14522 1441 aa26.12■■□□□ 1.77
VIM-205ENST00000485947 PZPP20742 1482 aa26.11■■□□□ 1.77
VIM-205ENST00000485947 KIF15Q9NS87 1388 aa26.11■■□□□ 1.77
VIM-205ENST00000485947 ERBINQ96RT1 1412 aa26.11■■□□□ 1.77
VIM-205ENST00000485947 CROCC2H7BZ55 1655 aa26.09■■□□□ 1.77
VIM-205ENST00000485947 ANKRD30AQ9BXX3 1397 aa26.09■■□□□ 1.77
VIM-205ENST00000485947 LTBP4Q8N2S1 1624 aa26.09■■□□□ 1.77
VIM-205ENST00000485947 NCOA1Q15788 1441 aa26.07■■□□□ 1.76
VIM-205ENST00000485947 ZNF142P52746 1687 aaPredicted RBP26.06■■□□□ 1.76
VIM-205ENST00000485947 ZC3H13Q5T200 1668 aaKnown RBP26.06■■□□□ 1.76
VIM-205ENST00000485947 PLA2R1Q13018 1463 aa26.05■■□□□ 1.76
VIM-205ENST00000485947 IQSEC2Q5JU85 1478 aa26.05■■□□□ 1.76
VIM-205ENST00000485947 RRP7BPQ9NSQ0 103 aa26.05■■□□□ 1.76
VIM-205ENST00000485947 MYO3AQ8NEV4 1616 aa26.05■■□□□ 1.76
VIM-205ENST00000485947 TNRQ92752 1358 aa26.05■■□□□ 1.76
VIM-205ENST00000485947 CEP170BQ9Y4F5 1589 aaPredicted RBP26.04■■□□□ 1.76
VIM-205ENST00000485947 PKD2Q13563 968 aa26.04■■□□□ 1.76
VIM-205ENST00000485947 A2ML1A8K2U0 1454 aa26.04■■□□□ 1.76
VIM-205ENST00000485947 ABCC3O15438 1527 aa26.03■■□□□ 1.76
VIM-205ENST00000485947 ADGRL2O95490 1459 aa26.01■■□□□ 1.75
VIM-205ENST00000485947 FAM50AQ14320 339 aaKnown RBP26.01■■□□□ 1.75
VIM-205ENST00000485947 CAMSAP1Q5T5Y3 1602 aa26■■□□□ 1.75
VIM-205ENST00000485947 FBXO31Q5XUX0 539 aaPredicted RBP26■■□□□ 1.75
VIM-205ENST00000485947 NLRP1Q9C000 1473 aa25.99■■□□□ 1.75
VIM-205ENST00000485947 MROH1Q8NDA8 1641 aa25.99■■□□□ 1.75
VIM-205ENST00000485947 PRDM15P57071 1507 aaPredicted RBP25.98■■□□□ 1.75
VIM-205ENST00000485947 KANK1Q14678 1352 aa25.97■■□□□ 1.75
VIM-205ENST00000485947 ARHGAP31Q2M1Z3 1444 aa25.97■■□□□ 1.75
VIM-205ENST00000485947 CHIC2Q9UKJ5 165 aa25.96■■□□□ 1.75
VIM-205ENST00000485947 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.95■■□□□ 1.75
VIM-205ENST00000485947 THEMISQ8N1K5 641 aaPredicted RBP25.94■■□□□ 1.74
VIM-205ENST00000485947 DEPDC5O75140 1603 aa25.92■■□□□ 1.74
VIM-205ENST00000485947 PPARGC1BQ86YN6 1023 aaKnown RBP25.91■■□□□ 1.74
VIM-205ENST00000485947 ERVK-7P63135 1459 aa25.9■■□□□ 1.74
VIM-205ENST00000485947 ROCK1Q13464 1354 aa25.89■■□□□ 1.74
VIM-205ENST00000485947 NCKAP5LQ9HCH0 1330 aa25.88■■□□□ 1.73
VIM-205ENST00000485947 LMTK2Q8IWU2 1503 aa25.88■■□□□ 1.73
VIM-205ENST00000485947 ANKRD50Q9ULJ7 1429 aa25.88■■□□□ 1.73
VIM-205ENST00000485947 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.85■■□□□ 1.73
VIM-205ENST00000485947 VWDEQ8N2E2 1590 aa25.85■■□□□ 1.73
VIM-205ENST00000485947 UGGT1Q9NYU2 1555 aa25.85■■□□□ 1.73
VIM-205ENST00000485947 ANKLE2Q86XL3 938 aa25.84■■□□□ 1.73
VIM-205ENST00000485947 CEP152O94986 1710 aa25.83■■□□□ 1.73
VIM-205ENST00000485947 TRIM26Q12899 539 aaPredicted RBP25.8■■□□□ 1.72
VIM-205ENST00000485947 UBAP1LF5GYI3 381 aa25.77■■□□□ 1.72
VIM-205ENST00000485947 MED14O60244 1454 aa25.76■■□□□ 1.71
VIM-205ENST00000485947 RPRD2Q5VT52 1461 aaKnown RBP25.75■■□□□ 1.71
VIM-205ENST00000485947 ZNF335Q9H4Z2 1342 aaPredicted RBP25.75■■□□□ 1.71
VIM-205ENST00000485947 RRBP1Q9P2E9 1410 aaKnown RBP25.74■■□□□ 1.71
VIM-205ENST00000485947 POLR1AO95602 1720 aaPredicted RBP25.73■■□□□ 1.71
VIM-205ENST00000485947 EFCAB6Q5THR3 1501 aa25.73■■□□□ 1.71
VIM-205ENST00000485947 NEURL4Q96JN8 1562 aa25.71■■□□□ 1.71
VIM-205ENST00000485947 SLC52A1Q9NWF4 448 aa25.71■■□□□ 1.71
VIM-205ENST00000485947 NOS1P29475 1434 aa25.71■■□□□ 1.71
VIM-205ENST00000485947 NPHP4O75161 1426 aaPredicted RBP25.7■■□□□ 1.7
VIM-205ENST00000485947 ARHGAP23Q9P227 1491 aa25.67■■□□□ 1.7
VIM-205ENST00000485947 UNC13BO14795 1591 aa25.67■■□□□ 1.7
VIM-205ENST00000485947 UBR1Q8IWV7 1749 aa25.67■■□□□ 1.7
VIM-205ENST00000485947 KDM5AP29375 1690 aaKnown RBP25.67■■□□□ 1.7
VIM-205ENST00000485947 SLIT1O75093 1534 aa25.67■■□□□ 1.7
VIM-205ENST00000485947 CFAP65Q6ZU64 1925 aaKnown RBP25.66■■□□□ 1.7
VIM-205ENST00000485947 MED1Q15648 1581 aaPredicted RBP25.65■■□□□ 1.7
VIM-205ENST00000485947 IDI1Q13907 227 aa25.65■■□□□ 1.7
VIM-205ENST00000485947 EID1Q9Y6B2 187 aa25.65■■□□□ 1.7
VIM-205ENST00000485947 TET3O43151 1660 aa25.64■■□□□ 1.7
VIM-205ENST00000485947 ITGAEP38570 1179 aa25.64■■□□□ 1.7
VIM-205ENST00000485947 STAG3Q9UJ98 1225 aa25.64■■□□□ 1.7
VIM-205ENST00000485947 CPS1P31327 1500 aa25.63■■□□□ 1.69
VIM-205ENST00000485947 SCAF11Q99590 1463 aaKnown RBP25.63■■□□□ 1.69
VIM-205ENST00000485947 TMEM2Q9UHN6 1383 aa25.62■■□□□ 1.69
VIM-205ENST00000485947 TXNDC2Q86VQ3 553 aa25.61■■□□□ 1.69
VIM-205ENST00000485947 SYNMO15061 1565 aa25.59■■□□□ 1.69
VIM-205ENST00000485947 PIK3C2BO00750 1634 aa25.59■■□□□ 1.69
VIM-205ENST00000485947 IQGAP1P46940 1657 aa25.58■■□□□ 1.69
VIM-205ENST00000485947 NUP155O75694 1391 aa25.58■■□□□ 1.69
VIM-205ENST00000485947 HSPA1LP34931 641 aa25.58■■□□□ 1.69
VIM-205ENST00000485947 GCC2Q8IWJ2 1684 aa25.58■■□□□ 1.68
VIM-205ENST00000485947 IQGAP3Q86VI3 1631 aa25.57■■□□□ 1.68
VIM-205ENST00000485947 LTKP29376 864 aa25.56■■□□□ 1.68
VIM-205ENST00000485947 PCGF6Q9BYE7 350 aa25.55■■□□□ 1.68
VIM-205ENST00000485947 HDGFP51858 240 aaKnown RBP25.54■■□□□ 1.68
VIM-205ENST00000485947 ADGRB3O60242 1522 aa25.53■■□□□ 1.68
VIM-205ENST00000485947 NAIPQ13075 1403 aa25.5■■□□□ 1.67
VIM-205ENST00000485947 HFM1A2PYH4 1435 aa25.48■■□□□ 1.67
VIM-205ENST00000485947 E9PCH4 1651 aa25.46■■□□□ 1.67
VIM-205ENST00000485947 SCAF1Q9H7N4 1312 aaKnown RBP25.46■■□□□ 1.67
VIM-205ENST00000485947 TOM1O60784 492 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms