RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ABCC5O15440 1437 aa17.78■□□□□ 0.44
USP40-214ENST00000483519 TMC1Q8TDI8 760 aa17.77■□□□□ 0.44
USP40-214ENST00000483519 ADGRL2O95490 1459 aa17.77■□□□□ 0.43
USP40-214ENST00000483519 WDR7Q9Y4E6 1490 aa17.77■□□□□ 0.43
USP40-214ENST00000483519 KDM5CP41229 1560 aa17.76■□□□□ 0.43
USP40-214ENST00000483519 TCERG1O14776 1098 aaKnown RBP17.76■□□□□ 0.43
USP40-214ENST00000483519 SHANK2Q9UPX8 1470 aa17.76■□□□□ 0.43
USP40-214ENST00000483519 POLR3GLQ9BT43 218 aa17.75■□□□□ 0.43
USP40-214ENST00000483519 ABCC10Q5T3U5 1492 aa17.74■□□□□ 0.43
USP40-214ENST00000483519 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
USP40-214ENST00000483519 USP35Q9P2H5 1018 aa17.74■□□□□ 0.43
USP40-214ENST00000483519 PZPP20742 1482 aa17.74■□□□□ 0.43
USP40-214ENST00000483519 PLEKHG5O94827 1062 aa17.74■□□□□ 0.43
USP40-214ENST00000483519 LRPPRCP42704 1394 aaKnown RBP17.73■□□□□ 0.43
USP40-214ENST00000483519 KIF15Q9NS87 1388 aa17.73■□□□□ 0.43
USP40-214ENST00000483519 KTN1Q86UP2 1357 aaKnown RBP17.73■□□□□ 0.43
USP40-214ENST00000483519 RRP1P56182 461 aaKnown RBP17.72■□□□□ 0.43
USP40-214ENST00000483519 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
USP40-214ENST00000483519 ARHGEF5Q12774 1597 aa17.72■□□□□ 0.43
USP40-214ENST00000483519 BRD4O60885 1362 aaPredicted RBP17.71■□□□□ 0.43
USP40-214ENST00000483519 KIAA1107Q9UPP5 1409 aa17.71■□□□□ 0.43
USP40-214ENST00000483519 GPATCH8Q9UKJ3 1502 aaKnown RBP17.71■□□□□ 0.42
USP40-214ENST00000483519 MS4A1P11836 297 aa17.7■□□□□ 0.42
USP40-214ENST00000483519 KCNA4P22459 653 aa17.69■□□□□ 0.42
USP40-214ENST00000483519 FAM69CQ0P6D2 419 aa17.69■□□□□ 0.42
USP40-214ENST00000483519 NPM2Q86SE8 214 aaKnown RBP17.69■□□□□ 0.42
USP40-214ENST00000483519 CDC42BPAQ5VT25 1732 aa17.69■□□□□ 0.42
USP40-214ENST00000483519 GLI2P10070 1586 aa17.69■□□□□ 0.42
USP40-214ENST00000483519 TULP1O00294 542 aaPredicted RBP17.69■□□□□ 0.42
USP40-214ENST00000483519 DIP2BQ9P265 1576 aa17.68■□□□□ 0.42
USP40-214ENST00000483519 MYBBP1AQ9BQG0 1328 aaKnown RBP17.68■□□□□ 0.42
USP40-214ENST00000483519 RALGAPBQ86X10 1494 aa17.68■□□□□ 0.42
USP40-214ENST00000483519 ZNF326Q5BKZ1 582 aaKnown RBP17.68■□□□□ 0.42
USP40-214ENST00000483519 PDE4AP27815 886 aa17.67■□□□□ 0.42
USP40-214ENST00000483519 RALBP1Q15311 655 aa17.67■□□□□ 0.42
USP40-214ENST00000483519 UHRF1BP1Q6BDS2 1440 aa17.67■□□□□ 0.42
USP40-214ENST00000483519 CAMSAP2Q08AD1 1489 aa17.67■□□□□ 0.42
USP40-214ENST00000483519 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
USP40-214ENST00000483519 NEFMP07197 916 aa17.66■□□□□ 0.42
USP40-214ENST00000483519 RCAN3Q9UKA8 241 aa17.66■□□□□ 0.42
USP40-214ENST00000483519 PREX2Q70Z35 1606 aa17.66■□□□□ 0.42
USP40-214ENST00000483519 EXOC6Q8TAG9 804 aa17.66■□□□□ 0.42
USP40-214ENST00000483519 BACH2Q9BYV9 841 aa17.65■□□□□ 0.42
USP40-214ENST00000483519 ZNF644Q9H582 1327 aaPredicted RBP17.64■□□□□ 0.42
USP40-214ENST00000483519 MAST1Q9Y2H9 1570 aa17.64■□□□□ 0.41
USP40-214ENST00000483519 PDE3BQ13370 1112 aa17.64■□□□□ 0.41
USP40-214ENST00000483519 SENP3-EIF4A1A0A087X0R7 540 aa17.63■□□□□ 0.41
USP40-214ENST00000483519 KIF13AQ9H1H9 1805 aa17.63■□□□□ 0.41
USP40-214ENST00000483519 ARHGEF12Q9NZN5 1544 aa17.63■□□□□ 0.41
USP40-214ENST00000483519 ARAP3Q8WWN8 1544 aa17.62■□□□□ 0.41
USP40-214ENST00000483519 LAS1LQ9Y4W2 734 aaKnown RBP17.62■□□□□ 0.41
USP40-214ENST00000483519 IL27Q8NEV9 243 aa17.62■□□□□ 0.41
USP40-214ENST00000483519 E9PCH4 1651 aa17.62■□□□□ 0.41
USP40-214ENST00000483519 ANO8Q9HCE9 1232 aaPredicted RBP17.61■□□□□ 0.41
USP40-214ENST00000483519 KDM5DQ9BY66 1539 aa17.61■□□□□ 0.41
USP40-214ENST00000483519 CARD11Q9BXL7 1154 aa17.61■□□□□ 0.41
USP40-214ENST00000483519 ABCA9Q8IUA7 1624 aa17.6■□□□□ 0.41
USP40-214ENST00000483519 PKD2Q13563 968 aa17.6■□□□□ 0.41
USP40-214ENST00000483519 DDRGK1Q96HY6 314 aa17.6■□□□□ 0.41
USP40-214ENST00000483519 PLEKHH2Q8IVE3 1493 aa17.59■□□□□ 0.41
USP40-214ENST00000483519 CD109Q6YHK3 1445 aa17.59■□□□□ 0.41
USP40-214ENST00000483519 WASHC2CQ9Y4E1 1318 aa17.59■□□□□ 0.41
USP40-214ENST00000483519 RSPH4AQ5TD94 716 aa17.57■□□□□ 0.4
USP40-214ENST00000483519 MAP3K4Q9Y6R4 1608 aa17.57■□□□□ 0.4
USP40-214ENST00000483519 NLRP13Q86W25 1043 aa17.57■□□□□ 0.4
USP40-214ENST00000483519 SALL2Q9Y467 1007 aaPredicted RBP17.56■□□□□ 0.4
USP40-214ENST00000483519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.56■□□□□ 0.4
USP40-214ENST00000483519 ANKRD30AQ9BXX3 1397 aa17.56■□□□□ 0.4
USP40-214ENST00000483519 CFDP1Q9UEE9 299 aaPredicted RBP17.55■□□□□ 0.4
USP40-214ENST00000483519 ST20-MTHFSA0A0A6YYL1 179 aa17.54■□□□□ 0.4
USP40-214ENST00000483519 CDC42BPBQ9Y5S2 1711 aa17.53■□□□□ 0.4
USP40-214ENST00000483519 MYO5CQ9NQX4 1742 aa17.53■□□□□ 0.4
USP40-214ENST00000483519 PARD3Q8TEW0 1356 aa17.53■□□□□ 0.4
USP40-214ENST00000483519 ANKRD50Q9ULJ7 1429 aa17.52■□□□□ 0.4
USP40-214ENST00000483519 TTC37Q6PGP7 1564 aa17.52■□□□□ 0.4
USP40-214ENST00000483519 INSRP06213 1382 aa17.52■□□□□ 0.4
USP40-214ENST00000483519 ZMYM4Q5VZL5 1548 aa17.52■□□□□ 0.39
USP40-214ENST00000483519 PLXNC1O60486 1568 aa17.51■□□□□ 0.39
USP40-214ENST00000483519 PLCH2O75038 1416 aa17.51■□□□□ 0.39
USP40-214ENST00000483519 TSPOAP1O95153 1857 aa17.51■□□□□ 0.39
USP40-214ENST00000483519 SAMD9LQ8IVG5 1584 aa17.49■□□□□ 0.39
USP40-214ENST00000483519 EFCAB2Q5VUJ9 269 aa17.49■□□□□ 0.39
USP40-214ENST00000483519 CCDC141Q6ZP82 1450 aa17.48■□□□□ 0.39
USP40-214ENST00000483519 CFAP74Q9C0B2 1584 aa17.48■□□□□ 0.39
USP40-214ENST00000483519 NUP155O75694 1391 aa17.48■□□□□ 0.39
USP40-214ENST00000483519 NEO1Q92859 1461 aa17.47■□□□□ 0.39
USP40-214ENST00000483519 GSE1Q14687 1217 aa17.47■□□□□ 0.39
USP40-214ENST00000483519 BLMP54132 1417 aaPredicted RBP17.47■□□□□ 0.39
USP40-214ENST00000483519 PPRC1Q5VV67 1664 aaKnown RBP17.46■□□□□ 0.39
USP40-214ENST00000483519 CDCA7LQ96GN5 454 aa17.45■□□□□ 0.38
USP40-214ENST00000483519 KDM2AQ9Y2K7 1162 aa17.45■□□□□ 0.38
USP40-214ENST00000483519 FANCAO15360 1455 aa17.45■□□□□ 0.38
USP40-214ENST00000483519 CRBNQ96SW2 442 aa17.45■□□□□ 0.38
USP40-214ENST00000483519 ZNF777Q9ULD5 760 aaPredicted RBP17.45■□□□□ 0.38
USP40-214ENST00000483519 ARHGAP5Q13017 1502 aa17.45■□□□□ 0.38
USP40-214ENST00000483519 DCAF11Q8TEB1 546 aa17.44■□□□□ 0.38
USP40-214ENST00000483519 C9orf84Q5VXU9 1444 aa17.44■□□□□ 0.38
USP40-214ENST00000483519 UNC13BO14795 1591 aa17.43■□□□□ 0.38
USP40-214ENST00000483519 PLIN1O60240 522 aa17.43■□□□□ 0.38
USP40-214ENST00000483519 NFKBIBQ15653 356 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 185.9 ms