RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NISCHQ9Y2I1 1504 aa26.91■■□□□ 1.9
USP40-214ENST00000483519 CCDC180Q9P1Z9 1646 aa23.69■■□□□ 1.38
USP40-214ENST00000483519 ABCC9O60706 1549 aa22.85■■□□□ 1.25
USP40-214ENST00000483519 ZCCHC6Q5VYS8 1495 aaKnown RBP22.75■■□□□ 1.23
USP40-214ENST00000483519 DCAF1Q9Y4B6 1507 aa22.59■■□□□ 1.21
USP40-214ENST00000483519 SHROOM4Q9ULL8 1493 aa22.5■■□□□ 1.19
USP40-214ENST00000483519 SUPT5HO00267 1087 aaKnown RBP22.32■■□□□ 1.16
USP40-214ENST00000483519 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
USP40-214ENST00000483519 DCAF8L2P0C7V8 631 aa22.24■■□□□ 1.15
USP40-214ENST00000483519 HRCP23327 699 aa22.24■■□□□ 1.15
USP40-214ENST00000483519 NACADO15069 1562 aa22.23■■□□□ 1.15
USP40-214ENST00000483519 RB1CC1Q8TDY2 1594 aa22.18■■□□□ 1.14
USP40-214ENST00000483519 CHIC1Q5VXU3 224 aa21.96■■□□□ 1.11
USP40-214ENST00000483519 PCGF6Q9BYE7 350 aa21.83■■□□□ 1.08
USP40-214ENST00000483519 PPARGC1BQ86YN6 1023 aaKnown RBP21.6■■□□□ 1.05
USP40-214ENST00000483519 UNC13AQ9UPW8 1703 aa21.57■■□□□ 1.04
USP40-214ENST00000483519 SCRIBQ14160 1630 aa21.57■■□□□ 1.04
USP40-214ENST00000483519 BICRAQ9NZM4 1560 aa21.41■■□□□ 1.02
USP40-214ENST00000483519 PABPN1Q86U42 306 aaKnown RBP eCLIP21.39■■□□□ 1.02
USP40-214ENST00000483519 TRIM26Q12899 539 aaPredicted RBP21.34■■□□□ 1.01
USP40-214ENST00000483519 LOC105371045A0A1W2PR82 267 aa21.29■■□□□ 1
USP40-214ENST00000483519 PELP1Q8IZL8 1130 aaKnown RBP21.18■□□□□ 0.98
USP40-214ENST00000483519 ZEB1P37275 1124 aaPredicted RBP21.18■□□□□ 0.98
USP40-214ENST00000483519 SLC24A1O60721 1099 aa21.06■□□□□ 0.96
USP40-214ENST00000483519 RSF1Q96T23 1441 aaPredicted RBP20.91■□□□□ 0.94
USP40-214ENST00000483519 EIF4G1Q04637 1599 aaKnown RBP20.85■□□□□ 0.93
USP40-214ENST00000483519 BAZ1AQ9NRL2 1556 aaPredicted RBP20.81■□□□□ 0.92
USP40-214ENST00000483519 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
USP40-214ENST00000483519 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
USP40-214ENST00000483519 CECR2Q9BXF3 1484 aa20.76■□□□□ 0.91
USP40-214ENST00000483519 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
USP40-214ENST00000483519 CC2D2AQ9P2K1 1620 aa20.69■□□□□ 0.9
USP40-214ENST00000483519 DNAJC5BQ9UF47 199 aa20.66■□□□□ 0.9
USP40-214ENST00000483519 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
USP40-214ENST00000483519 FAM9AQ8IZU1 332 aaPredicted RBP20.59■□□□□ 0.89
USP40-214ENST00000483519 PEG3Q9GZU2 1588 aa20.57■□□□□ 0.88
USP40-214ENST00000483519 SMARCA2P51531 1590 aa20.55■□□□□ 0.88
USP40-214ENST00000483519 ATAD2BQ9ULI0 1458 aa20.51■□□□□ 0.87
USP40-214ENST00000483519 TOP2AP11388 1531 aaKnown RBP20.51■□□□□ 0.87
USP40-214ENST00000483519 NCAPD3P42695 1498 aa20.49■□□□□ 0.87
USP40-214ENST00000483519 WIZO95785 1651 aa20.48■□□□□ 0.87
USP40-214ENST00000483519 ACIN1Q9UKV3 1341 aaKnown RBP20.45■□□□□ 0.86
USP40-214ENST00000483519 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
USP40-214ENST00000483519 BAZ1BQ9UIG0 1483 aaKnown RBP20.38■□□□□ 0.85
USP40-214ENST00000483519 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
USP40-214ENST00000483519 CCER1Q8TC90 406 aaPredicted RBP20.36■□□□□ 0.85
USP40-214ENST00000483519 MYT1Q01538 1121 aa20.33■□□□□ 0.85
USP40-214ENST00000483519 NEUROD1Q13562 356 aa20.33■□□□□ 0.85
USP40-214ENST00000483519 CENPBP07199 599 aaPredicted RBP20.33■□□□□ 0.84
USP40-214ENST00000483519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.32■□□□□ 0.84
USP40-214ENST00000483519 DIEXFQ68CQ4 756 aaKnown RBP20.26■□□□□ 0.83
USP40-214ENST00000483519 GTF3C3Q9Y5Q9 886 aa20.21■□□□□ 0.83
USP40-214ENST00000483519 WRNQ14191 1432 aaPredicted RBP eCLIP20.15■□□□□ 0.82
USP40-214ENST00000483519 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
USP40-214ENST00000483519 CEP162Q5TB80 1403 aa20■□□□□ 0.79
USP40-214ENST00000483519 ZNF316A6NFI3 1004 aaPredicted RBP19.97■□□□□ 0.79
USP40-214ENST00000483519 TNIKQ9UKE5 1360 aa19.94■□□□□ 0.78
USP40-214ENST00000483519 CADPSQ9ULU8 1353 aa19.91■□□□□ 0.78
USP40-214ENST00000483519 LAMC3Q9Y6N6 1575 aa19.91■□□□□ 0.78
USP40-214ENST00000483519 ABCC8Q09428 1581 aa19.89■□□□□ 0.77
USP40-214ENST00000483519 TTBK1Q5TCY1 1321 aaPredicted RBP19.89■□□□□ 0.77
USP40-214ENST00000483519 EEA1Q15075 1411 aa19.88■□□□□ 0.77
USP40-214ENST00000483519 CFTRP13569 1480 aa19.83■□□□□ 0.77
USP40-214ENST00000483519 NESP48681 1621 aa19.82■□□□□ 0.76
USP40-214ENST00000483519 SOGA1O94964 1423 aa19.79■□□□□ 0.76
USP40-214ENST00000483519 PDS5BQ9NTI5 1447 aa19.79■□□□□ 0.76
USP40-214ENST00000483519 YTHDC1Q96MU7 727 aaKnown RBP19.78■□□□□ 0.76
USP40-214ENST00000483519 PRDM2Q13029 1718 aa19.76■□□□□ 0.75
USP40-214ENST00000483519 CSRNP3Q8WYN3 585 aa19.75■□□□□ 0.75
USP40-214ENST00000483519 GOLGA3Q08378 1498 aa19.75■□□□□ 0.75
USP40-214ENST00000483519 ERCC6Q03468 1493 aa19.73■□□□□ 0.75
USP40-214ENST00000483519 UBTFP17480 764 aaKnown RBP19.73■□□□□ 0.75
USP40-214ENST00000483519 MIER1Q8N108 512 aa19.71■□□□□ 0.75
USP40-214ENST00000483519 BIVM-ERCC5R4GMW8 1640 aa19.67■□□□□ 0.74
USP40-214ENST00000483519 FANCD2Q9BXW9 1451 aa19.66■□□□□ 0.74
USP40-214ENST00000483519 RUSC2Q8N2Y8 1516 aa19.64■□□□□ 0.73
USP40-214ENST00000483519 CEP164Q9UPV0 1460 aa19.63■□□□□ 0.73
USP40-214ENST00000483519 TOP2BQ02880 1626 aa19.62■□□□□ 0.73
USP40-214ENST00000483519 KIF21AQ7Z4S6 1674 aa19.61■□□□□ 0.73
USP40-214ENST00000483519 HNRNPUL2Q1KMD3 747 aaKnown RBP19.58■□□□□ 0.73
USP40-214ENST00000483519 CLSPNQ9HAW4 1339 aa19.58■□□□□ 0.72
USP40-214ENST00000483519 KIF21BO75037 1637 aa19.57■□□□□ 0.72
USP40-214ENST00000483519 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
USP40-214ENST00000483519 MRC2Q9UBG0 1479 aa19.54■□□□□ 0.72
USP40-214ENST00000483519 CLIP1P30622 1438 aa19.52■□□□□ 0.72
USP40-214ENST00000483519 VPS8Q8N3P4 1428 aa19.52■□□□□ 0.71
USP40-214ENST00000483519 THOC2Q8NI27 1593 aaKnown RBP19.49■□□□□ 0.71
USP40-214ENST00000483519 APLP2Q06481 763 aa19.46■□□□□ 0.71
USP40-214ENST00000483519 WDR62O43379 1518 aa19.44■□□□□ 0.7
USP40-214ENST00000483519 CUX2O14529 1486 aa19.43■□□□□ 0.7
USP40-214ENST00000483519 URB2Q14146 1524 aaKnown RBP19.41■□□□□ 0.7
USP40-214ENST00000483519 PRKCSHP14314 528 aaPredicted RBP19.4■□□□□ 0.7
USP40-214ENST00000483519 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.7
USP40-214ENST00000483519 TOPBP1Q92547 1522 aa19.37■□□□□ 0.69
USP40-214ENST00000483519 DAXXQ9UER7 740 aaPredicted RBP19.37■□□□□ 0.69
USP40-214ENST00000483519 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
USP40-214ENST00000483519 SUPT16HQ9Y5B9 1047 aaKnown RBP19.35■□□□□ 0.69
USP40-214ENST00000483519 CUX1P39880 1505 aa19.33■□□□□ 0.69
USP40-214ENST00000483519 DHX57Q6P158 1386 aaKnown RBP19.31■□□□□ 0.68
USP40-214ENST00000483519 RAPGEF2Q9Y4G8 1499 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms