RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 SHANK2Q9UPX8 1470 aa20.24■□□□□ 0.83
TPM3-216ENST00000473036 DHX29Q7Z478 1369 aaKnown RBP20.24■□□□□ 0.83
TPM3-216ENST00000473036 DISP3Q9P2K9 1392 aa20.24■□□□□ 0.83
TPM3-216ENST00000473036 NCOA1Q15788 1441 aa20.23■□□□□ 0.83
TPM3-216ENST00000473036 SOCS7O14512 581 aa20.22■□□□□ 0.83
TPM3-216ENST00000473036 MROH2AA6NES4 1674 aa20.21■□□□□ 0.83
TPM3-216ENST00000473036 LTBP4Q8N2S1 1624 aa20.2■□□□□ 0.82
TPM3-216ENST00000473036 RRBP1Q9P2E9 1410 aaKnown RBP20.2■□□□□ 0.82
TPM3-216ENST00000473036 CHIC2Q9UKJ5 165 aa20.2■□□□□ 0.82
TPM3-216ENST00000473036 RRP7BPQ9NSQ0 103 aa20.16■□□□□ 0.82
TPM3-216ENST00000473036 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.16■□□□□ 0.823e-7■■□□□ 11.8
TPM3-216ENST00000473036 ADGRL2O95490 1459 aa20.16■□□□□ 0.82
TPM3-216ENST00000473036 KIF15Q9NS87 1388 aa20.15■□□□□ 0.82
TPM3-216ENST00000473036 SPATA31D1Q6ZQQ2 1576 aa20.14■□□□□ 0.81
TPM3-216ENST00000473036 DUOX2Q9NRD8 1548 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 ZMYM3Q14202 1370 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 KIF3BO15066 747 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 GGT6Q6P531 493 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 ILDR2Q71H61 639 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 PPP6R1Q9UPN7 881 aa20.13■□□□□ 0.81
TPM3-216ENST00000473036 CAMSAP1Q5T5Y3 1602 aa20.12■□□□□ 0.81
TPM3-216ENST00000473036 MROH1Q8NDA8 1641 aa20.12■□□□□ 0.81
TPM3-216ENST00000473036 PLA2R1Q13018 1463 aa20.11■□□□□ 0.81
TPM3-216ENST00000473036 CLTCQ00610 1675 aaKnown RBP20.11■□□□□ 0.81
TPM3-216ENST00000473036 PKD2Q13563 968 aa20.11■□□□□ 0.81
TPM3-216ENST00000473036 RNF17Q9BXT8 1623 aaKnown RBP20.11■□□□□ 0.81
TPM3-216ENST00000473036 EIF2AK4Q9P2K8 1649 aaKnown RBP20.1■□□□□ 0.81
TPM3-216ENST00000473036 ANKRD30AQ9BXX3 1397 aa20.09■□□□□ 0.81
TPM3-216ENST00000473036 ITGAEP38570 1179 aa20.09■□□□□ 0.81
TPM3-216ENST00000473036 ZNF142P52746 1687 aaPredicted RBP20.08■□□□□ 0.81
TPM3-216ENST00000473036 ERBINQ96RT1 1412 aa20.07■□□□□ 0.8
TPM3-216ENST00000473036 ROCK1Q13464 1354 aa20.05■□□□□ 0.8
TPM3-216ENST00000473036 DEPDC5O75140 1603 aa20.04■□□□□ 0.8
TPM3-216ENST00000473036 MYO3AQ8NEV4 1616 aa20.02■□□□□ 0.8
TPM3-216ENST00000473036 CEP170BQ9Y4F5 1589 aaPredicted RBP20.02■□□□□ 0.8
TPM3-216ENST00000473036 KDM5DQ9BY66 1539 aa20.02■□□□□ 0.79
TPM3-216ENST00000473036 ABCC3O15438 1527 aa20.01■□□□□ 0.79
TPM3-216ENST00000473036 PRDM15P57071 1507 aaPredicted RBP20.01■□□□□ 0.79
TPM3-216ENST00000473036 ANKRD50Q9ULJ7 1429 aa20.01■□□□□ 0.79
TPM3-216ENST00000473036 CEP152O94986 1710 aa20■□□□□ 0.79
TPM3-216ENST00000473036 NCKAP5LQ9HCH0 1330 aa20■□□□□ 0.79
TPM3-216ENST00000473036 ZNF335Q9H4Z2 1342 aaPredicted RBP19.99■□□□□ 0.79
TPM3-216ENST00000473036 FAM135AQ9P2D6 1515 aa19.98■□□□□ 0.79
TPM3-216ENST00000473036 WASHC2CQ9Y4E1 1318 aa19.98■□□□□ 0.79
TPM3-216ENST00000473036 VWDEQ8N2E2 1590 aa19.97■□□□□ 0.79
TPM3-216ENST00000473036 UBAP1LF5GYI3 381 aa19.97■□□□□ 0.79
TPM3-216ENST00000473036 A2ML1A8K2U0 1454 aa19.96■□□□□ 0.79
TPM3-216ENST00000473036 ZC3H13Q5T200 1668 aaKnown RBP19.95■□□□□ 0.78
TPM3-216ENST00000473036 FBXO31Q5XUX0 539 aaPredicted RBP19.95■□□□□ 0.78
TPM3-216ENST00000473036 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.94■□□□□ 0.784e-19■■■■■ 38.6
TPM3-216ENST00000473036 NAIPQ13075 1403 aa19.93■□□□□ 0.78
TPM3-216ENST00000473036 PZPP20742 1482 aa19.92■□□□□ 0.78
TPM3-216ENST00000473036 UNC13BO14795 1591 aa19.92■□□□□ 0.78
TPM3-216ENST00000473036 CFAP65Q6ZU64 1925 aaKnown RBP19.92■□□□□ 0.78
TPM3-216ENST00000473036 CPS1P31327 1500 aa19.91■□□□□ 0.78
TPM3-216ENST00000473036 GCC2Q8IWJ2 1684 aa19.91■□□□□ 0.78
TPM3-216ENST00000473036 LMTK2Q8IWU2 1503 aa19.9■□□□□ 0.78
TPM3-216ENST00000473036 HFM1A2PYH4 1435 aa19.88■□□□□ 0.77
TPM3-216ENST00000473036 TOM1O60784 492 aa19.86■□□□□ 0.77
TPM3-216ENST00000473036 ARHGAP31Q2M1Z3 1444 aa19.85■□□□□ 0.77
TPM3-216ENST00000473036 TNRQ92752 1358 aa19.85■□□□□ 0.77
TPM3-216ENST00000473036 EFCAB6Q5THR3 1501 aa19.84■□□□□ 0.77
TPM3-216ENST00000473036 POLR1AO95602 1720 aaPredicted RBP19.84■□□□□ 0.77
TPM3-216ENST00000473036 ERVK-7P63135 1459 aa19.84■□□□□ 0.77
TPM3-216ENST00000473036 IQGAP3Q86VI3 1631 aa19.84■□□□□ 0.77
TPM3-216ENST00000473036 KANK1Q14678 1352 aa19.83■□□□□ 0.77
TPM3-216ENST00000473036 NLRP1Q9C000 1473 aa19.83■□□□□ 0.76
TPM3-216ENST00000473036 TET3O43151 1660 aa19.81■□□□□ 0.76
TPM3-216ENST00000473036 ANKLE2Q86XL3 938 aa19.81■□□□□ 0.76
TPM3-216ENST00000473036 THEMISQ8N1K5 641 aaPredicted RBP19.81■□□□□ 0.76
TPM3-216ENST00000473036 NEURL4Q96JN8 1562 aa19.81■□□□□ 0.76
TPM3-216ENST00000473036 NUP155O75694 1391 aa19.8■□□□□ 0.76
TPM3-216ENST00000473036 MED14O60244 1454 aa19.79■□□□□ 0.76
TPM3-216ENST00000473036 E9PCH4 1651 aa19.79■□□□□ 0.76
TPM3-216ENST00000473036 SYNMO15061 1565 aa19.78■□□□□ 0.76
TPM3-216ENST00000473036 NOS1P29475 1434 aa19.76■□□□□ 0.75
TPM3-216ENST00000473036 HSPA1LP34931 641 aa19.76■□□□□ 0.75
TPM3-216ENST00000473036 MED1Q15648 1581 aaPredicted RBP19.75■□□□□ 0.75
TPM3-216ENST00000473036 UGGT1Q9NYU2 1555 aa19.74■□□□□ 0.75
TPM3-216ENST00000473036 NPHP4O75161 1426 aaPredicted RBP19.73■□□□□ 0.75
TPM3-216ENST00000473036 PIP4K2BP78356 416 aa19.72■□□□□ 0.75
TPM3-216ENST00000473036 RPRD2Q5VT52 1461 aaKnown RBP19.72■□□□□ 0.75
TPM3-216ENST00000473036 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
TPM3-216ENST00000473036 SETD5Q9C0A6 1442 aa19.71■□□□□ 0.75
TPM3-216ENST00000473036 UBR1Q8IWV7 1749 aa19.71■□□□□ 0.75
TPM3-216ENST00000473036 PIK3C2BO00750 1634 aa19.69■□□□□ 0.74
TPM3-216ENST00000473036 IDI1Q13907 227 aa19.69■□□□□ 0.74
TPM3-216ENST00000473036 IQGAP1P46940 1657 aa19.68■□□□□ 0.74
TPM3-216ENST00000473036 TRIM52Q96A61 297 aa19.67■□□□□ 0.74
TPM3-216ENST00000473036 RAB3GAP2Q9H2M9 1393 aa19.67■□□□□ 0.74
TPM3-216ENST00000473036 SPHKAPQ2M3C7 1700 aa19.64■□□□□ 0.73
TPM3-216ENST00000473036 MYO5BQ9ULV0 1848 aa19.63■□□□□ 0.73
TPM3-216ENST00000473036 ALKQ9UM73 1620 aa19.63■□□□□ 0.73
TPM3-216ENST00000473036 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
TPM3-216ENST00000473036 LRRC7Q96NW7 1537 aa19.61■□□□□ 0.73
TPM3-216ENST00000473036 FOXD1Q16676 465 aa19.61■□□□□ 0.73
TPM3-216ENST00000473036 KDM5AP29375 1690 aaKnown RBP19.6■□□□□ 0.73
TPM3-216ENST00000473036 SLC4A1APQ9BWU0 796 aaKnown RBP19.6■□□□□ 0.73
TPM3-216ENST00000473036 SLC52A1Q9NWF4 448 aa19.6■□□□□ 0.73
TPM3-216ENST00000473036 ADGRB3O60242 1522 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms