RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 PRDM15P57071 1507 aaPredicted RBP16.75■□□□□ 0.27
VCP-204ENST00000466100 VWDEQ8N2E2 1590 aa16.72■□□□□ 0.27
VCP-204ENST00000466100 KDM5DQ9BY66 1539 aa16.72■□□□□ 0.27
VCP-204ENST00000466100 IQGAP3Q86VI3 1631 aa16.7■□□□□ 0.26
VCP-204ENST00000466100 HRCP23327 699 aa16.69■□□□□ 0.26
VCP-204ENST00000466100 CEP152O94986 1710 aa16.68■□□□□ 0.26
VCP-204ENST00000466100 ZC3H13Q5T200 1668 aaKnown RBP16.68■□□□□ 0.26
VCP-204ENST00000466100 FAM135AQ9P2D6 1515 aa16.67■□□□□ 0.26
VCP-204ENST00000466100 KIF3BO15066 747 aa16.66■□□□□ 0.26
VCP-204ENST00000466100 PZPP20742 1482 aa16.66■□□□□ 0.26
VCP-204ENST00000466100 ABCC3O15438 1527 aa16.65■□□□□ 0.26
VCP-204ENST00000466100 LMTK2Q8IWU2 1503 aa16.65■□□□□ 0.26
VCP-204ENST00000466100 TET3O43151 1660 aa16.64■□□□□ 0.25
VCP-204ENST00000466100 ADAMTSL3P82987 1691 aa16.64■□□□□ 0.25
VCP-204ENST00000466100 FER1L4A9Z1Z3 1794 aa16.64■□□□□ 0.25
VCP-204ENST00000466100 CAMSAP1Q5T5Y3 1602 aa16.63■□□□□ 0.25
VCP-204ENST00000466100 CLTCQ00610 1675 aaKnown RBP16.62■□□□□ 0.25
VCP-204ENST00000466100 MROH2AA6NES4 1674 aa16.61■□□□□ 0.25
VCP-204ENST00000466100 ACIN1Q9UKV3 1341 aaKnown RBP16.61■□□□□ 0.25
VCP-204ENST00000466100 EFCAB6Q5THR3 1501 aa16.6■□□□□ 0.25
VCP-204ENST00000466100 NUP155O75694 1391 aa16.6■□□□□ 0.25
VCP-204ENST00000466100 MADDQ8WXG6 1647 aa16.59■□□□□ 0.25
VCP-204ENST00000466100 E9PCH4 1651 aa16.59■□□□□ 0.25
VCP-204ENST00000466100 GGT6Q6P531 493 aa16.58■□□□□ 0.24
VCP-204ENST00000466100 KANK1Q14678 1352 aa16.57■□□□□ 0.24
VCP-204ENST00000466100 ARID4BQ4LE39 1312 aaPredicted RBP16.57■□□□□ 0.24
VCP-204ENST00000466100 PPP6R1Q9UPN7 881 aa16.57■□□□□ 0.24
VCP-204ENST00000466100 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.56■□□□□ 0.241e-11■■□□□ 11.6
VCP-204ENST00000466100 RIMS1Q86UR5 1692 aaKnown RBP16.56■□□□□ 0.24
VCP-204ENST00000466100 DHX57Q6P158 1386 aaKnown RBP16.55■□□□□ 0.24
VCP-204ENST00000466100 TRIM52Q96A61 297 aa16.55■□□□□ 0.24
VCP-204ENST00000466100 C3P01024 1663 aa16.54■□□□□ 0.24
VCP-204ENST00000466100 MLECQ14165 292 aa16.54■□□□□ 0.24
VCP-204ENST00000466100 ARHGAP31Q2M1Z3 1444 aa16.53■□□□□ 0.24
VCP-204ENST00000466100 CNTLNQ9NXG0 1405 aa16.53■□□□□ 0.24
VCP-204ENST00000466100 SPHKAPQ2M3C7 1700 aa16.53■□□□□ 0.24
VCP-204ENST00000466100 PREX1Q8TCU6 1659 aa16.53■□□□□ 0.24
VCP-204ENST00000466100 CFAP65Q6ZU64 1925 aaKnown RBP16.53■□□□□ 0.24
VCP-204ENST00000466100 MPHOSPH9Q99550 1183 aa16.52■□□□□ 0.24
VCP-204ENST00000466100 RPRD2Q5VT52 1461 aaKnown RBP16.52■□□□□ 0.23
VCP-204ENST00000466100 NPATQ14207 1427 aa16.52■□□□□ 0.23
VCP-204ENST00000466100 WASHC2CQ9Y4E1 1318 aa16.51■□□□□ 0.23
VCP-204ENST00000466100 SLC4A1APQ9BWU0 796 aaKnown RBP16.5■□□□□ 0.23
VCP-204ENST00000466100 SPATA31D1Q6ZQQ2 1576 aa16.48■□□□□ 0.23
VCP-204ENST00000466100 SYNMO15061 1565 aa16.47■□□□□ 0.23
VCP-204ENST00000466100 PKD2Q13563 968 aa16.47■□□□□ 0.23
VCP-204ENST00000466100 PLA2R1Q13018 1463 aa16.47■□□□□ 0.23
VCP-204ENST00000466100 PTPRTO14522 1441 aa16.46■□□□□ 0.23
VCP-204ENST00000466100 TRPM2O94759 1503 aa16.46■□□□□ 0.23
VCP-204ENST00000466100 ZMYM3Q14202 1370 aa16.46■□□□□ 0.23
VCP-204ENST00000466100 ERVK-7P63135 1459 aa16.46■□□□□ 0.23
VCP-204ENST00000466100 NOS1P29475 1434 aa16.45■□□□□ 0.22
VCP-204ENST00000466100 PIK3C2BO00750 1634 aa16.45■□□□□ 0.22
VCP-204ENST00000466100 ANKRD30BQ9BXX2 1392 aa16.43■□□□□ 0.22
VCP-204ENST00000466100 FOXD1Q16676 465 aa16.43■□□□□ 0.22
VCP-204ENST00000466100 CLTCL1P53675 1640 aa16.43■□□□□ 0.22
VCP-204ENST00000466100 PTPRMP28827 1452 aa16.42■□□□□ 0.22
VCP-204ENST00000466100 ESF1Q9H501 851 aaKnown RBP16.42■□□□□ 0.22
VCP-204ENST00000466100 KDM4FA0A1W2PPD8 638 aa16.41■□□□□ 0.22
VCP-204ENST00000466100 UGGT1Q9NYU2 1555 aa16.4■□□□□ 0.22
VCP-204ENST00000466100 SETD1BQ9UPS6 1966 aaKnown RBP16.38■□□□□ 0.21
VCP-204ENST00000466100 MYO3AQ8NEV4 1616 aa16.38■□□□□ 0.21
VCP-204ENST00000466100 FBXO31Q5XUX0 539 aaPredicted RBP16.38■□□□□ 0.21
VCP-204ENST00000466100 KIF1BO60333 1816 aa16.37■□□□□ 0.21
VCP-204ENST00000466100 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
VCP-204ENST00000466100 MYO5BQ9ULV0 1848 aa16.36■□□□□ 0.21
VCP-204ENST00000466100 CEBPAP49715 358 aaPredicted RBP16.36■□□□□ 0.21
VCP-204ENST00000466100 KDM5AP29375 1690 aaKnown RBP16.36■□□□□ 0.21
VCP-204ENST00000466100 ZNF142P52746 1687 aaPredicted RBP16.36■□□□□ 0.21
VCP-204ENST00000466100 NEURL4Q96JN8 1562 aa16.34■□□□□ 0.21
VCP-204ENST00000466100 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
VCP-204ENST00000466100 TNRQ92752 1358 aa16.34■□□□□ 0.21
VCP-204ENST00000466100 CCDC144AA2RUR9 1427 aa16.33■□□□□ 0.2
VCP-204ENST00000466100 ADGRB3O60242 1522 aa16.33■□□□□ 0.2
VCP-204ENST00000466100 TMEM131LA2VDJ0 1609 aa16.33■□□□□ 0.2
VCP-204ENST00000466100 UBR1Q8IWV7 1749 aa16.33■□□□□ 0.2
VCP-204ENST00000466100 NLRP1Q9C000 1473 aa16.32■□□□□ 0.2
VCP-204ENST00000466100 CEP170BQ9Y4F5 1589 aaPredicted RBP16.3■□□□□ 0.2
VCP-204ENST00000466100 SPATA31E1Q6ZUB1 1445 aa16.3■□□□□ 0.2
VCP-204ENST00000466100 IFT172Q9UG01 1749 aa16.3■□□□□ 0.2
VCP-204ENST00000466100 SLC52A1Q9NWF4 448 aa16.29■□□□□ 0.2
VCP-204ENST00000466100 IDI1Q13907 227 aa16.28■□□□□ 0.2
VCP-204ENST00000466100 SIN3AQ96ST3 1273 aa16.28■□□□□ 0.2
VCP-204ENST00000466100 A2ML1A8K2U0 1454 aa16.28■□□□□ 0.2
VCP-204ENST00000466100 PPLO60437 1756 aa16.26■□□□□ 0.19
VCP-204ENST00000466100 PLPPR3Q6T4P5 718 aa16.25■□□□□ 0.19
VCP-204ENST00000466100 NEXMIFQ5QGS0 1516 aa16.23■□□□□ 0.19
VCP-204ENST00000466100 UHRF1BP1Q6BDS2 1440 aa16.22■□□□□ 0.19
VCP-204ENST00000466100 SLIT1O75093 1534 aa16.2■□□□□ 0.18
VCP-204ENST00000466100 NEUROD1Q13562 356 aa16.2■□□□□ 0.18
VCP-204ENST00000466100 LMTK3Q96Q04 1460 aa16.2■□□□□ 0.18
VCP-204ENST00000466100 ARHGAP23Q9P227 1491 aa16.2■□□□□ 0.18
VCP-204ENST00000466100 ZFYVE9O95405 1425 aa16.19■□□□□ 0.18
VCP-204ENST00000466100 MYOM2P54296 1465 aa16.17■□□□□ 0.18
VCP-204ENST00000466100 POLR1AO95602 1720 aaPredicted RBP16.16■□□□□ 0.18
VCP-204ENST00000466100 TONSLQ96HA7 1378 aa16.16■□□□□ 0.18
VCP-204ENST00000466100 TMEM2Q9UHN6 1383 aa16.15■□□□□ 0.18
VCP-204ENST00000466100 CHGAP10645 457 aaKnown RBP16.15■□□□□ 0.18
VCP-204ENST00000466100 NRXN1Q9ULB1 1477 aa16.15■□□□□ 0.18
VCP-204ENST00000466100 RIMS2Q9UQ26 1411 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms