RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 NISCHQ9Y2I1 1504 aa26.58■■□□□ 1.85
VCP-204ENST00000466100 CCDC180Q9P1Z9 1646 aa23.51■■□□□ 1.35
VCP-204ENST00000466100 ABCC9O60706 1549 aa22.48■■□□□ 1.19
VCP-204ENST00000466100 ZCCHC6Q5VYS8 1495 aaKnown RBP22.26■■□□□ 1.15
VCP-204ENST00000466100 DCAF1Q9Y4B6 1507 aa22.05■■□□□ 1.12
VCP-204ENST00000466100 MYO15BQ96JP2 1530 aa21.98■■□□□ 1.11
VCP-204ENST00000466100 NACADO15069 1562 aa21.94■■□□□ 1.1
VCP-204ENST00000466100 RB1CC1Q8TDY2 1594 aa21.86■■□□□ 1.09
VCP-204ENST00000466100 DCAF8L2P0C7V8 631 aa21.81■■□□□ 1.08
VCP-204ENST00000466100 UNC13AQ9UPW8 1703 aa21.5■■□□□ 1.03
VCP-204ENST00000466100 SCRIBQ14160 1630 aa21.43■■□□□ 1.02
VCP-204ENST00000466100 BICRAQ9NZM4 1560 aa21.25■□□□□ 0.99
VCP-204ENST00000466100 SHROOM4Q9ULL8 1493 aa21.14■□□□□ 0.98
VCP-204ENST00000466100 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
VCP-204ENST00000466100 CECR2Q9BXF3 1484 aa20.65■□□□□ 0.9
VCP-204ENST00000466100 EIF4G1Q04637 1599 aaKnown RBP20.61■□□□□ 0.89
VCP-204ENST00000466100 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
VCP-204ENST00000466100 BAZ1AQ9NRL2 1556 aaPredicted RBP20.56■□□□□ 0.88
VCP-204ENST00000466100 MROH2BQ7Z745 1585 aa20.5■□□□□ 0.87
VCP-204ENST00000466100 CC2D2AQ9P2K1 1620 aa20.42■□□□□ 0.86
VCP-204ENST00000466100 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
VCP-204ENST00000466100 RSF1Q96T23 1441 aaPredicted RBP20.38■□□□□ 0.85
VCP-204ENST00000466100 WIZO95785 1651 aa20.32■□□□□ 0.84
VCP-204ENST00000466100 ATAD2BQ9ULI0 1458 aa20.3■□□□□ 0.84
VCP-204ENST00000466100 SMARCA2P51531 1590 aa20.3■□□□□ 0.84
VCP-204ENST00000466100 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
VCP-204ENST00000466100 NCAPD3P42695 1498 aa20.22■□□□□ 0.83
VCP-204ENST00000466100 HMGXB3Q12766 1538 aa20.21■□□□□ 0.83
VCP-204ENST00000466100 BAZ1BQ9UIG0 1483 aaKnown RBP20.14■□□□□ 0.81
VCP-204ENST00000466100 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
VCP-204ENST00000466100 SUPT5HO00267 1087 aaKnown RBP20.05■□□□□ 0.8
VCP-204ENST00000466100 CCDC88BA6NC98 1476 aa19.85■□□□□ 0.77
VCP-204ENST00000466100 LAMC3Q9Y6N6 1575 aa19.65■□□□□ 0.74
VCP-204ENST00000466100 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
VCP-204ENST00000466100 CFTRP13569 1480 aa19.63■□□□□ 0.73
VCP-204ENST00000466100 NESP48681 1621 aa19.62■□□□□ 0.73
VCP-204ENST00000466100 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
VCP-204ENST00000466100 KIF21AQ7Z4S6 1674 aa19.46■□□□□ 0.71
VCP-204ENST00000466100 PDS5BQ9NTI5 1447 aa19.42■□□□□ 0.7
VCP-204ENST00000466100 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
VCP-204ENST00000466100 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
VCP-204ENST00000466100 ERCC6Q03468 1493 aa19.31■□□□□ 0.68
VCP-204ENST00000466100 THOC2Q8NI27 1593 aaKnown RBP19.31■□□□□ 0.68
VCP-204ENST00000466100 ABCC8Q09428 1581 aa19.27■□□□□ 0.67
VCP-204ENST00000466100 MRC2Q9UBG0 1479 aa19.24■□□□□ 0.67
VCP-204ENST00000466100 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
VCP-204ENST00000466100 WDR62O43379 1518 aa19.21■□□□□ 0.67
VCP-204ENST00000466100 CUX1P39880 1505 aa19.21■□□□□ 0.67
VCP-204ENST00000466100 DNMBPQ6XZF7 1577 aa19.21■□□□□ 0.67
VCP-204ENST00000466100 BIVM-ERCC5R4GMW8 1640 aa19.2■□□□□ 0.66
VCP-204ENST00000466100 SYNJ1O43426 1573 aa19.19■□□□□ 0.66
VCP-204ENST00000466100 WRNQ14191 1432 aaPredicted RBP eCLIP19.18■□□□□ 0.66
VCP-204ENST00000466100 TOPBP1Q92547 1522 aa19.18■□□□□ 0.66
VCP-204ENST00000466100 TOP2BQ02880 1626 aa19.17■□□□□ 0.66
VCP-204ENST00000466100 POLA1P09884 1462 aaPredicted RBP19.04■□□□□ 0.64
VCP-204ENST00000466100 FGD5Q6ZNL6 1462 aa19.04■□□□□ 0.64
VCP-204ENST00000466100 CHIC1Q5VXU3 224 aa19.02■□□□□ 0.64
VCP-204ENST00000466100 CUX2O14529 1486 aa19.02■□□□□ 0.63
VCP-204ENST00000466100 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
VCP-204ENST00000466100 WDR97A6NE52 1622 aa18.99■□□□□ 0.63
VCP-204ENST00000466100 RAD54L2Q9Y4B4 1467 aa18.93■□□□□ 0.62
VCP-204ENST00000466100 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
VCP-204ENST00000466100 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
VCP-204ENST00000466100 SOGA1O94964 1423 aa18.91■□□□□ 0.62
VCP-204ENST00000466100 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
VCP-204ENST00000466100 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
VCP-204ENST00000466100 ZNF608Q9ULD9 1512 aaPredicted RBP18.83■□□□□ 0.6
VCP-204ENST00000466100 EIF4G3O43432 1585 aaKnown RBP18.82■□□□□ 0.6
VCP-204ENST00000466100 PBRM1Q86U86 1689 aa18.76■□□□□ 0.59
VCP-204ENST00000466100 TDRD9Q8NDG6 1382 aaKnown RBP18.74■□□□□ 0.59
VCP-204ENST00000466100 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
VCP-204ENST00000466100 AQRO60306 1485 aaKnown RBP eCLIP18.73■□□□□ 0.593e-7■■□□□ 13.6
VCP-204ENST00000466100 KIF27Q86VH2 1401 aa18.73■□□□□ 0.59
VCP-204ENST00000466100 GAPVD1Q14C86 1478 aa18.72■□□□□ 0.59
VCP-204ENST00000466100 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
VCP-204ENST00000466100 GRIN2BQ13224 1484 aa18.67■□□□□ 0.58
VCP-204ENST00000466100 EEA1Q15075 1411 aa18.66■□□□□ 0.58
VCP-204ENST00000466100 IGF1RP08069 1367 aa18.62■□□□□ 0.57
VCP-204ENST00000466100 ADAMTS12P58397 1594 aa18.62■□□□□ 0.57
VCP-204ENST00000466100 CUL7Q14999 1698 aa18.62■□□□□ 0.57
VCP-204ENST00000466100 SNAPC4Q5SXM2 1469 aa18.6■□□□□ 0.57
VCP-204ENST00000466100 MAGI1Q96QZ7 1491 aaPredicted RBP18.59■□□□□ 0.57
VCP-204ENST00000466100 PRXQ9BXM0 1461 aa18.53■□□□□ 0.56
VCP-204ENST00000466100 CHD1O14646 1710 aa18.52■□□□□ 0.56
VCP-204ENST00000466100 FHAD1B1AJZ9 1412 aa18.52■□□□□ 0.56
VCP-204ENST00000466100 KIF21BO75037 1637 aa18.52■□□□□ 0.55
VCP-204ENST00000466100 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
VCP-204ENST00000466100 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
VCP-204ENST00000466100 SYNJ2O15056 1496 aa18.51■□□□□ 0.55
VCP-204ENST00000466100 CARMIL1Q5VZK9 1371 aa18.49■□□□□ 0.55
VCP-204ENST00000466100 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.54
VCP-204ENST00000466100 GRIN2AQ12879 1464 aa18.45■□□□□ 0.54
VCP-204ENST00000466100 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
VCP-204ENST00000466100 GOLGA3Q08378 1498 aa18.38■□□□□ 0.53
VCP-204ENST00000466100 CTTNBP2Q8WZ74 1663 aa18.37■□□□□ 0.53
VCP-204ENST00000466100 NUP160Q12769 1436 aa18.36■□□□□ 0.53
VCP-204ENST00000466100 CHMP7Q8WUX9 453 aaPredicted RBP18.35■□□□□ 0.53
VCP-204ENST00000466100 CLASP1Q7Z460 1538 aa18.32■□□□□ 0.52
VCP-204ENST00000466100 FBLN2P98095 1184 aa18.31■□□□□ 0.52
VCP-204ENST00000466100 KIAA0586Q9BVV6 1533 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms