RNA–Protein interactions for RNA: ENST00000465903.5

SMC4-206, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 849 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-206ENST00000465903 ADGRL2O95490 1459 aa39.78■■■■□ 3.96
SMC4-206ENST00000465903 NCOA1Q15788 1441 aa39.78■■■■□ 3.96
SMC4-206ENST00000465903 ANKRD30AQ9BXX3 1397 aa39.78■■■■□ 3.96
SMC4-206ENST00000465903 ZMYM3Q14202 1370 aa39.77■■■■□ 3.96
SMC4-206ENST00000465903 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.77■■■■□ 3.963e-6■□□□□ 10.4
SMC4-206ENST00000465903 RNF17Q9BXT8 1623 aaKnown RBP39.76■■■■□ 3.96
SMC4-206ENST00000465903 RRBP1Q9P2E9 1410 aaKnown RBP39.74■■■■□ 3.95
SMC4-206ENST00000465903 LMTK3Q96Q04 1460 aa39.7■■■■□ 3.95
SMC4-206ENST00000465903 ERBINQ96RT1 1412 aa39.7■■■■□ 3.95
SMC4-206ENST00000465903 MROH1Q8NDA8 1641 aa39.69■■■■□ 3.94
SMC4-206ENST00000465903 FAM135AQ9P2D6 1515 aa39.67■■■■□ 3.94
SMC4-206ENST00000465903 PREX1Q8TCU6 1659 aa39.66■■■■□ 3.94
SMC4-206ENST00000465903 KDM5DQ9BY66 1539 aa39.65■■■■□ 3.94
SMC4-206ENST00000465903 WASHC2CQ9Y4E1 1318 aa39.63■■■■□ 3.93
SMC4-206ENST00000465903 ITGAEP38570 1179 aa39.6■■■■□ 3.93
SMC4-206ENST00000465903 NPATQ14207 1427 aa39.58■■■■□ 3.93
SMC4-206ENST00000465903 DEPDC5O75140 1603 aa39.58■■■■□ 3.93
SMC4-206ENST00000465903 ROCK1Q13464 1354 aa39.58■■■■□ 3.93
SMC4-206ENST00000465903 ABCC3O15438 1527 aa39.56■■■■□ 3.92
SMC4-206ENST00000465903 ZC3H13Q5T200 1668 aaKnown RBP39.56■■■■□ 3.92
SMC4-206ENST00000465903 CEP152O94986 1710 aa39.56■■■■□ 3.92
SMC4-206ENST00000465903 PRDM15P57071 1507 aaPredicted RBP39.55■■■■□ 3.92
SMC4-206ENST00000465903 ANKRD50Q9ULJ7 1429 aa39.53■■■■□ 3.92
SMC4-206ENST00000465903 HSPA2P54652 639 aa39.52■■■■□ 3.92
SMC4-206ENST00000465903 UHRF1BP1Q6BDS2 1440 aa39.51■■■■□ 3.92
SMC4-206ENST00000465903 PZPP20742 1482 aa39.49■■■■□ 3.91
SMC4-206ENST00000465903 FBXO31Q5XUX0 539 aaPredicted RBP39.47■■■■□ 3.91
SMC4-206ENST00000465903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP39.47■■■■□ 3.911e-7■■■■□ 24.4
SMC4-206ENST00000465903 CFAP65Q6ZU64 1925 aaKnown RBP39.45■■■■□ 3.91
SMC4-206ENST00000465903 CAMSAP1Q5T5Y3 1602 aa39.44■■■■□ 3.9
SMC4-206ENST00000465903 VWDEQ8N2E2 1590 aa39.43■■■■□ 3.9
SMC4-206ENST00000465903 MYO3AQ8NEV4 1616 aa39.4■■■■□ 3.9
SMC4-206ENST00000465903 KANK1Q14678 1352 aa39.38■■■■□ 3.89
SMC4-206ENST00000465903 LMTK2Q8IWU2 1503 aa39.35■■■■□ 3.89
SMC4-206ENST00000465903 ZNF142P52746 1687 aaPredicted RBP39.34■■■■□ 3.89
SMC4-206ENST00000465903 TNRQ92752 1358 aa39.33■■■■□ 3.89
SMC4-206ENST00000465903 UNC13BO14795 1591 aa39.33■■■■□ 3.89
SMC4-206ENST00000465903 ARHGAP31Q2M1Z3 1444 aa39.32■■■■□ 3.89
SMC4-206ENST00000465903 SPATA31D1Q6ZQQ2 1576 aa39.3■■■■□ 3.88
SMC4-206ENST00000465903 CEP170BQ9Y4F5 1589 aaPredicted RBP39.29■■■■□ 3.88
SMC4-206ENST00000465903 STRCQ7RTU9 1775 aa39.28■■■■□ 3.88
SMC4-206ENST00000465903 ERVK-7P63135 1459 aa39.28■■■■□ 3.88
SMC4-206ENST00000465903 NAIPQ13075 1403 aa39.25■■■■□ 3.87
SMC4-206ENST00000465903 GCC2Q8IWJ2 1684 aa39.24■■■■□ 3.87
SMC4-206ENST00000465903 A2ML1A8K2U0 1454 aa39.24■■■■□ 3.87
SMC4-206ENST00000465903 EFCAB6Q5THR3 1501 aa39.19■■■■□ 3.86
SMC4-206ENST00000465903 TET3O43151 1660 aa39.18■■■■□ 3.86
SMC4-206ENST00000465903 NLRP1Q9C000 1473 aa39.17■■■■□ 3.86
SMC4-206ENST00000465903 IQGAP3Q86VI3 1631 aa39.17■■■■□ 3.86
SMC4-206ENST00000465903 HFM1A2PYH4 1435 aa39.15■■■■□ 3.86
SMC4-206ENST00000465903 NUP155O75694 1391 aa39.11■■■■□ 3.85
SMC4-206ENST00000465903 PLA2R1Q13018 1463 aa39.08■■■■□ 3.85
SMC4-206ENST00000465903 NOS1P29475 1434 aa39.07■■■■□ 3.85
SMC4-206ENST00000465903 E9PCH4 1651 aa39.07■■■■□ 3.85
SMC4-206ENST00000465903 UGGT1Q9NYU2 1555 aa39.07■■■■□ 3.84
SMC4-206ENST00000465903 RPRD2Q5VT52 1461 aaKnown RBP39.06■■■■□ 3.84
SMC4-206ENST00000465903 SYNMO15061 1565 aa39.05■■■■□ 3.84
SMC4-206ENST00000465903 NCKAP5LQ9HCH0 1330 aa39.02■■■■□ 3.84
SMC4-206ENST00000465903 UBR1Q8IWV7 1749 aa39.01■■■■□ 3.84
SMC4-206ENST00000465903 THEMISQ8N1K5 641 aaPredicted RBP39■■■■□ 3.83
SMC4-206ENST00000465903 DMRT2Q9Y5R5 561 aa39■■■■□ 3.83
SMC4-206ENST00000465903 PIK3C2BO00750 1634 aa38.99■■■■□ 3.83
SMC4-206ENST00000465903 PTPRTO14522 1441 aa38.98■■■■□ 3.83
SMC4-206ENST00000465903 PKD2Q13563 968 aa38.96■■■■□ 3.83
SMC4-206ENST00000465903 IDI1Q13907 227 aa38.95■■■■□ 3.83
SMC4-206ENST00000465903 POLR1AO95602 1720 aaPredicted RBP38.93■■■■□ 3.82
SMC4-206ENST00000465903 TRIM52Q96A61 297 aa38.88■■■■□ 3.81
SMC4-206ENST00000465903 SLC52A1Q9NWF4 448 aa38.88■■■■□ 3.81
SMC4-206ENST00000465903 KDM5AP29375 1690 aaKnown RBP38.87■■■■□ 3.81
SMC4-206ENST00000465903 NEURL4Q96JN8 1562 aa38.87■■■■□ 3.81
SMC4-206ENST00000465903 ANKLE2Q86XL3 938 aa38.85■■■■□ 3.81
SMC4-206ENST00000465903 SETD5Q9C0A6 1442 aa38.81■■■■□ 3.8
SMC4-206ENST00000465903 ARHGAP23Q9P227 1491 aa38.81■■■■□ 3.8
SMC4-206ENST00000465903 SLIT1O75093 1534 aa38.81■■■■□ 3.8
SMC4-206ENST00000465903 MYO5BQ9ULV0 1848 aa38.81■■■■□ 3.8
SMC4-206ENST00000465903 SPHKAPQ2M3C7 1700 aa38.8■■■■□ 3.8
SMC4-206ENST00000465903 STAG3Q9UJ98 1225 aa38.79■■■■□ 3.8
SMC4-206ENST00000465903 ADGRB3O60242 1522 aa38.79■■■■□ 3.8
SMC4-206ENST00000465903 MED14O60244 1454 aa38.77■■■■□ 3.8
SMC4-206ENST00000465903 LTKP29376 864 aa38.74■■■■□ 3.79
SMC4-206ENST00000465903 TMEM131LA2VDJ0 1609 aa38.74■■■■□ 3.79
SMC4-206ENST00000465903 TMEM2Q9UHN6 1383 aa38.73■■■■□ 3.79
SMC4-206ENST00000465903 SLC4A1APQ9BWU0 796 aaKnown RBP38.73■■■■□ 3.79
SMC4-206ENST00000465903 NPHP4O75161 1426 aaPredicted RBP38.71■■■■□ 3.79
SMC4-206ENST00000465903 TXNDC2Q86VQ3 553 aa38.7■■■■□ 3.79
SMC4-206ENST00000465903 SCAF11Q99590 1463 aaKnown RBP38.69■■■■□ 3.78
SMC4-206ENST00000465903 RAB3GAP2Q9H2M9 1393 aa38.69■■■■□ 3.78
SMC4-206ENST00000465903 IQGAP1P46940 1657 aa38.68■■■■□ 3.78
SMC4-206ENST00000465903 LTBP4Q8N2S1 1624 aa38.66■■■■□ 3.78
SMC4-206ENST00000465903 MPHOSPH9Q99550 1183 aa38.63■■■■□ 3.77
SMC4-206ENST00000465903 EID1Q9Y6B2 187 aa38.63■■■■□ 3.77
SMC4-206ENST00000465903 TRPM2O94759 1503 aa38.63■■■■□ 3.77
SMC4-206ENST00000465903 CHGAP10645 457 aaKnown RBP38.62■■■■□ 3.77
SMC4-206ENST00000465903 ZNF335Q9H4Z2 1342 aaPredicted RBP38.62■■■■□ 3.77
SMC4-206ENST00000465903 ACIN1Q9UKV3 1341 aaKnown RBP38.62■■■■□ 3.77
SMC4-206ENST00000465903 CLTCL1P53675 1640 aa38.61■■■■□ 3.77
SMC4-206ENST00000465903 CERKQ8TCT0 537 aa38.6■■■■□ 3.77
SMC4-206ENST00000465903 ZFYVE9O95405 1425 aa38.57■■■■□ 3.77
SMC4-206ENST00000465903 FOXD1Q16676 465 aa38.57■■■■□ 3.76
SMC4-206ENST00000465903 RIMS2Q9UQ26 1411 aa38.54■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms