RNA–Protein interactions for RNA: ENST00000465903.5

SMC4-206, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 849 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-206ENST00000465903 NISCHQ9Y2I1 1504 aa63.13■■■■■ 7.7
SMC4-206ENST00000465903 CCDC180Q9P1Z9 1646 aa56.12■■■■■ 6.57
SMC4-206ENST00000465903 ABCC9O60706 1549 aa54.93■■■■■ 6.38
SMC4-206ENST00000465903 RB1CC1Q8TDY2 1594 aa52.81■■■■■ 6.04
SMC4-206ENST00000465903 NACADO15069 1562 aa52.75■■■■■ 6.03
SMC4-206ENST00000465903 DCAF8L2P0C7V8 631 aa52.72■■■■■ 6.03
SMC4-206ENST00000465903 ZCCHC6Q5VYS8 1495 aaKnown RBP52.57■■■■■ 6.01
SMC4-206ENST00000465903 MYO15BQ96JP2 1530 aa52.43■■■■■ 5.98
SMC4-206ENST00000465903 DCAF1Q9Y4B6 1507 aa52.21■■■■■ 5.95
SMC4-206ENST00000465903 UNC13AQ9UPW8 1703 aa51.78■■■■■ 5.88
SMC4-206ENST00000465903 PABPN1Q86U42 306 aaKnown RBP eCLIP51.35■■■■■ 5.81
SMC4-206ENST00000465903 BICRAQ9NZM4 1560 aa51.31■■■■■ 5.8
SMC4-206ENST00000465903 SCRIBQ14160 1630 aa51.2■■■■■ 5.79
SMC4-206ENST00000465903 SHROOM4Q9ULL8 1493 aa50.61■■■■■ 5.69
SMC4-206ENST00000465903 DNAJC5BQ9UF47 199 aa50.54■■■■■ 5.68
SMC4-206ENST00000465903 EIF4G1Q04637 1599 aaKnown RBP49.89■■■■■ 5.58
SMC4-206ENST00000465903 CC2D2AQ9P2K1 1620 aa49.71■■■■■ 5.55
SMC4-206ENST00000465903 CECR2Q9BXF3 1484 aa49.33■■■■■ 5.49
SMC4-206ENST00000465903 SMARCA4P51532 1647 aa48.99■■■■■ 5.43
SMC4-206ENST00000465903 BAZ1AQ9NRL2 1556 aaPredicted RBP48.89■■■■■ 5.42
SMC4-206ENST00000465903 ATAD2BQ9ULI0 1458 aa48.73■■■■■ 5.39
SMC4-206ENST00000465903 NCAPD3P42695 1498 aa48.7■■■■■ 5.39
SMC4-206ENST00000465903 MROH2BQ7Z745 1585 aa48.68■■■■■ 5.38
SMC4-206ENST00000465903 SMARCA2P51531 1590 aa48.62■■■■■ 5.37
SMC4-206ENST00000465903 PEG3Q9GZU2 1588 aa48.51■■■■■ 5.36
SMC4-206ENST00000465903 HMGXB3Q12766 1538 aa48.42■■■■■ 5.34
SMC4-206ENST00000465903 BAZ1BQ9UIG0 1483 aaKnown RBP48.28■■■■■ 5.32
SMC4-206ENST00000465903 WIZO95785 1651 aa48.18■■■■■ 5.3
SMC4-206ENST00000465903 RSF1Q96T23 1441 aaPredicted RBP48.1■■■■■ 5.29
SMC4-206ENST00000465903 TOP2AP11388 1531 aaKnown RBP47.6■■■■■ 5.21
SMC4-206ENST00000465903 NESP48681 1621 aa47.57■■■■■ 5.21
SMC4-206ENST00000465903 LAMC3Q9Y6N6 1575 aa47.4■■■■■ 5.18
SMC4-206ENST00000465903 ERCC6Q03468 1493 aa47.27■■■■■ 5.16
SMC4-206ENST00000465903 CADPSQ9ULU8 1353 aa47.26■■■■■ 5.16
SMC4-206ENST00000465903 CCDC88BA6NC98 1476 aa47.08■■■■■ 5.13
SMC4-206ENST00000465903 PDS5BQ9NTI5 1447 aa47.04■■■■■ 5.12
SMC4-206ENST00000465903 KIF21AQ7Z4S6 1674 aa47.03■■■■■ 5.12
SMC4-206ENST00000465903 CFTRP13569 1480 aa46.99■■■■■ 5.11
SMC4-206ENST00000465903 SUPT5HO00267 1087 aaKnown RBP46.84■■■■■ 5.09
SMC4-206ENST00000465903 THOC2Q8NI27 1593 aaKnown RBP46.84■■■■■ 5.09
SMC4-206ENST00000465903 CUX2O14529 1486 aa46.81■■■■■ 5.08
SMC4-206ENST00000465903 FANCD2Q9BXW9 1451 aa46.71■■■■■ 5.07
SMC4-206ENST00000465903 PRDM2Q13029 1718 aa46.69■■■■■ 5.06
SMC4-206ENST00000465903 CEP164Q9UPV0 1460 aa46.63■■■■■ 5.06
SMC4-206ENST00000465903 MRC2Q9UBG0 1479 aa46.58■■■■■ 5.05
SMC4-206ENST00000465903 WDR62O43379 1518 aa46.45■■■■■ 5.03
SMC4-206ENST00000465903 URB2Q14146 1524 aaKnown RBP46.28■■■■■ 5
SMC4-206ENST00000465903 TOPBP1Q92547 1522 aa45.99■■■■■ 4.95
SMC4-206ENST00000465903 ABCC8Q09428 1581 aa45.94■■■■■ 4.94
SMC4-206ENST00000465903 DNMBPQ6XZF7 1577 aa45.92■■■■■ 4.94
SMC4-206ENST00000465903 IFT140Q96RY7 1462 aa45.67■■■■■ 4.9
SMC4-206ENST00000465903 CUX1P39880 1505 aa45.66■■■■■ 4.9
SMC4-206ENST00000465903 POLA1P09884 1462 aaPredicted RBP45.59■■■■■ 4.89
SMC4-206ENST00000465903 TARBP1Q13395 1621 aaKnown RBP45.52■■■■■ 4.88
SMC4-206ENST00000465903 ZNF608Q9ULD9 1512 aaPredicted RBP45.52■■■■■ 4.88
SMC4-206ENST00000465903 FGD5Q6ZNL6 1462 aa45.48■■■■■ 4.87
SMC4-206ENST00000465903 DNAJC5Q9H3Z4 198 aa45.45■■■■■ 4.87
SMC4-206ENST00000465903 RAD54L2Q9Y4B4 1467 aa45.42■■■■■ 4.86
SMC4-206ENST00000465903 SOGA1O94964 1423 aa45.4■■■■■ 4.86
SMC4-206ENST00000465903 WRNQ14191 1432 aaPredicted RBP eCLIP45.31■■■■■ 4.84
SMC4-206ENST00000465903 EIF4G3O43432 1585 aaKnown RBP45.31■■■■■ 4.84
SMC4-206ENST00000465903 BIVM-ERCC5R4GMW8 1640 aa45.26■■■■■ 4.84
SMC4-206ENST00000465903 AQRO60306 1485 aaKnown RBP eCLIP45.26■■■■■ 4.842e-8■■■■■ 39.7
SMC4-206ENST00000465903 SYNJ1O43426 1573 aa45.24■■■■■ 4.83
SMC4-206ENST00000465903 TOP2BQ02880 1626 aa45.24■■■■■ 4.83
SMC4-206ENST00000465903 WDR97A6NE52 1622 aa45.15■■■■■ 4.82
SMC4-206ENST00000465903 TDRD9Q8NDG6 1382 aaKnown RBP45.15■■■■■ 4.82
SMC4-206ENST00000465903 ABCA10Q8WWZ4 1543 aa45.04■■■■■ 4.8
SMC4-206ENST00000465903 OSCARQ8IYS5 282 aa44.89■■■■■ 4.78
SMC4-206ENST00000465903 ABCA5Q8WWZ7 1642 aa44.87■■■■■ 4.77
SMC4-206ENST00000465903 GAPVD1Q14C86 1478 aa44.87■■■■■ 4.77
SMC4-206ENST00000465903 GRIN2BQ13224 1484 aa44.85■■■■■ 4.77
SMC4-206ENST00000465903 PBRM1Q86U86 1689 aa44.83■■■■■ 4.77
SMC4-206ENST00000465903 CHD1O14646 1710 aa44.81■■■■■ 4.76
SMC4-206ENST00000465903 SNAPC4Q5SXM2 1469 aa44.8■■■■■ 4.76
SMC4-206ENST00000465903 MAGI1Q96QZ7 1491 aaPredicted RBP44.72■■■■■ 4.75
SMC4-206ENST00000465903 FBLN2P98095 1184 aa44.66■■■■■ 4.74
SMC4-206ENST00000465903 SYNJ2O15056 1496 aa44.55■■■■■ 4.72
SMC4-206ENST00000465903 CHMP7Q8WUX9 453 aaPredicted RBP44.53■■■■■ 4.72
SMC4-206ENST00000465903 ERICH3Q5RHP9 1530 aa44.48■■■■■ 4.71
SMC4-206ENST00000465903 ADAMTS12P58397 1594 aa44.43■■■■■ 4.7
SMC4-206ENST00000465903 KIF27Q86VH2 1401 aa44.34■■■■■ 4.69
SMC4-206ENST00000465903 FHAD1B1AJZ9 1412 aa44.33■■■■■ 4.69
SMC4-206ENST00000465903 GRIN2AQ12879 1464 aa44.28■■■■■ 4.68
SMC4-206ENST00000465903 CLASP1Q7Z460 1538 aa44.28■■■■■ 4.68
SMC4-206ENST00000465903 IGF1RP08069 1367 aa44.23■■■■■ 4.67
SMC4-206ENST00000465903 RIMBP3CA6NJZ7 1639 aa44.22■■■■■ 4.67
SMC4-206ENST00000465903 RIMBP3BA6NNM3 1639 aa44.22■■■■■ 4.67
SMC4-206ENST00000465903 RIMBP3Q9UFD9 1639 aa44.22■■■■■ 4.67
SMC4-206ENST00000465903 TRIM41Q8WV44 630 aa44.22■■■■■ 4.67
SMC4-206ENST00000465903 ARHGEF11O15085 1522 aa44.18■■■■■ 4.66
SMC4-206ENST00000465903 CEP170Q5SW79 1584 aa44.1■■■■■ 4.65
SMC4-206ENST00000465903 NUP160Q12769 1436 aa44.1■■■■■ 4.65
SMC4-206ENST00000465903 CUL7Q14999 1698 aa44.07■■■■■ 4.64
SMC4-206ENST00000465903 RUSC2Q8N2Y8 1516 aa44.06■■■■■ 4.64
SMC4-206ENST00000465903 CARMIL1Q5VZK9 1371 aa43.94■■■■■ 4.63
SMC4-206ENST00000465903 ARAP1Q96P48 1450 aa43.83■■■■■ 4.61
SMC4-206ENST00000465903 SHROOM2Q13796 1616 aa43.81■■■■■ 4.6
SMC4-206ENST00000465903 CYB5RLQ6IPT4 315 aa43.77■■■■■ 4.6
SMC4-206ENST00000465903 CHIC1Q5VXU3 224 aa43.75■■■■■ 4.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms