RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SHANK2Q9UPX8 1470 aa9.73□□□□□ -0.85
USP48-206ENST00000464577 ANKRD30AQ9BXX3 1397 aa9.73□□□□□ -0.85
USP48-206ENST00000464577 DNAJC5BQ9UF47 199 aa9.72□□□□□ -0.85
USP48-206ENST00000464577 GPATCH8Q9UKJ3 1502 aaKnown RBP9.72□□□□□ -0.85
USP48-206ENST00000464577 CEP170Q5SW79 1584 aa9.72□□□□□ -0.85
USP48-206ENST00000464577 BACH2Q9BYV9 841 aa9.71□□□□□ -0.85
USP48-206ENST00000464577 RCAN3Q9UKA8 241 aa9.71□□□□□ -0.85
USP48-206ENST00000464577 ANKRD50Q9ULJ7 1429 aa9.71□□□□□ -0.86
USP48-206ENST00000464577 PARD3Q8TEW0 1356 aa9.71□□□□□ -0.86
USP48-206ENST00000464577 PPM1GO15355 546 aaPredicted RBP9.71□□□□□ -0.86
USP48-206ENST00000464577 PDE4AP27815 886 aa9.71□□□□□ -0.86
USP48-206ENST00000464577 PKD2Q13563 968 aa9.71□□□□□ -0.86
USP48-206ENST00000464577 EXOC6Q8TAG9 804 aa9.71□□□□□ -0.86
USP48-206ENST00000464577 POLR3GLQ9BT43 218 aa9.7□□□□□ -0.86
USP48-206ENST00000464577 CARD11Q9BXL7 1154 aa9.7□□□□□ -0.86
USP48-206ENST00000464577 PLEKHH2Q8IVE3 1493 aa9.69□□□□□ -0.86
USP48-206ENST00000464577 WASHC2CQ9Y4E1 1318 aa9.69□□□□□ -0.86
USP48-206ENST00000464577 ZNF326Q5BKZ1 582 aaKnown RBP9.69□□□□□ -0.86
USP48-206ENST00000464577 NLRP13Q86W25 1043 aa9.69□□□□□ -0.86
USP48-206ENST00000464577 CFDP1Q9UEE9 299 aaPredicted RBP9.69□□□□□ -0.86
USP48-206ENST00000464577 PTPRGP23470 1445 aa9.69□□□□□ -0.86
USP48-206ENST00000464577 PRG4Q92954 1404 aaPredicted RBP9.69□□□□□ -0.86
USP48-206ENST00000464577 ARID3CA6NKF2 412 aa9.68□□□□□ -0.86
USP48-206ENST00000464577 BLMP54132 1417 aaPredicted RBP9.68□□□□□ -0.86
USP48-206ENST00000464577 DDRGK1Q96HY6 314 aa9.68□□□□□ -0.86
USP48-206ENST00000464577 LAMC1P11047 1609 aa9.68□□□□□ -0.86
USP48-206ENST00000464577 CDC42BPAQ5VT25 1732 aa9.67□□□□□ -0.86
USP48-206ENST00000464577 NEFMP07197 916 aa9.67□□□□□ -0.86
USP48-206ENST00000464577 TRPM1Q7Z4N2 1603 aa9.66□□□□□ -0.86
USP48-206ENST00000464577 MRC2Q9UBG0 1479 aa9.66□□□□□ -0.86
USP48-206ENST00000464577 ST20-MTHFSA0A0A6YYL1 179 aa9.66□□□□□ -0.86
USP48-206ENST00000464577 CNGB1Q14028 1251 aaPredicted RBP9.66□□□□□ -0.86
USP48-206ENST00000464577 NPM2Q86SE8 214 aaKnown RBP9.66□□□□□ -0.86
USP48-206ENST00000464577 C9orf84Q5VXU9 1444 aa9.65□□□□□ -0.86
USP48-206ENST00000464577 IFT140Q96RY7 1462 aa9.65□□□□□ -0.86
USP48-206ENST00000464577 PRKCSHP14314 528 aaPredicted RBP9.65□□□□□ -0.87
USP48-206ENST00000464577 NUP155O75694 1391 aa9.65□□□□□ -0.87
USP48-206ENST00000464577 GRIN2AQ12879 1464 aa9.65□□□□□ -0.87
USP48-206ENST00000464577 EIF4G3O43432 1585 aaKnown RBP9.64□□□□□ -0.87
USP48-206ENST00000464577 GPRASP1Q5JY77 1395 aa9.64□□□□□ -0.87
USP48-206ENST00000464577 COL17A1Q9UMD9 1497 aaPredicted RBP9.64□□□□□ -0.87
USP48-206ENST00000464577 ZNF608Q9ULD9 1512 aaPredicted RBP9.64□□□□□ -0.87
USP48-206ENST00000464577 ARHGEF5Q12774 1597 aa9.63□□□□□ -0.87
USP48-206ENST00000464577 IL27Q8NEV9 243 aa9.63□□□□□ -0.87
USP48-206ENST00000464577 LAS1LQ9Y4W2 734 aaKnown RBP9.63□□□□□ -0.87
USP48-206ENST00000464577 PRAG1Q86YV5 1406 aa9.63□□□□□ -0.87
USP48-206ENST00000464577 ABCC10Q5T3U5 1492 aa9.63□□□□□ -0.87
USP48-206ENST00000464577 PRDM15P57071 1507 aaPredicted RBP9.62□□□□□ -0.87
USP48-206ENST00000464577 SENP3-EIF4A1A0A087X0R7 540 aa9.62□□□□□ -0.87
USP48-206ENST00000464577 PER1O15534 1290 aaPredicted RBP9.62□□□□□ -0.87
USP48-206ENST00000464577 EIF2AK4Q9P2K8 1649 aaKnown RBP9.61□□□□□ -0.87
USP48-206ENST00000464577 PLB1Q6P1J6 1458 aa9.61□□□□□ -0.87
USP48-206ENST00000464577 ANO8Q9HCE9 1232 aaPredicted RBP9.6□□□□□ -0.87
USP48-206ENST00000464577 KDM2BQ8NHM5 1336 aa9.6□□□□□ -0.87
USP48-206ENST00000464577 FAM135AQ9P2D6 1515 aa9.6□□□□□ -0.87
USP48-206ENST00000464577 DCAF11Q8TEB1 546 aa9.6□□□□□ -0.87
USP48-206ENST00000464577 CRBNQ96SW2 442 aa9.6□□□□□ -0.87
USP48-206ENST00000464577 CDCA7LQ96GN5 454 aa9.59□□□□□ -0.87
USP48-206ENST00000464577 ZNF777Q9ULD5 760 aaPredicted RBP9.59□□□□□ -0.87
USP48-206ENST00000464577 ABCA8O94911 1581 aa9.59□□□□□ -0.87
USP48-206ENST00000464577 CLASP1Q7Z460 1538 aa9.59□□□□□ -0.87
USP48-206ENST00000464577 SALL2Q9Y467 1007 aaPredicted RBP9.59□□□□□ -0.87
USP48-206ENST00000464577 NUP160Q12769 1436 aa9.58□□□□□ -0.88
USP48-206ENST00000464577 MAGI1Q96QZ7 1491 aaPredicted RBP9.58□□□□□ -0.88
USP48-206ENST00000464577 UNC13BO14795 1591 aa9.58□□□□□ -0.88
USP48-206ENST00000464577 GSE1Q14687 1217 aa9.58□□□□□ -0.88
USP48-206ENST00000464577 CENPQQ7L2Z9 268 aaPredicted RBP9.58□□□□□ -0.88
USP48-206ENST00000464577 KDM2AQ9Y2K7 1162 aa9.58□□□□□ -0.88
USP48-206ENST00000464577 SYNJ2O15056 1496 aa9.58□□□□□ -0.88
USP48-206ENST00000464577 CCDC144AA2RUR9 1427 aa9.57□□□□□ -0.88
USP48-206ENST00000464577 CARMIL2Q6F5E8 1435 aa9.57□□□□□ -0.88
USP48-206ENST00000464577 ERBINQ96RT1 1412 aa9.57□□□□□ -0.88
USP48-206ENST00000464577 A2MP01023 1474 aa9.57□□□□□ -0.88
USP48-206ENST00000464577 TSPY4P0CV99 314 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 TSPY10P0CW01 314 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 NFKBIBQ15653 356 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 CCDC141Q6ZP82 1450 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 RNF17Q9BXT8 1623 aaKnown RBP9.56□□□□□ -0.88
USP48-206ENST00000464577 MAST1Q9Y2H9 1570 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 DISP3Q9P2K9 1392 aa9.56□□□□□ -0.88
USP48-206ENST00000464577 PLIN1O60240 522 aa9.55□□□□□ -0.88
USP48-206ENST00000464577 FAM161AQ3B820 660 aa9.55□□□□□ -0.88
USP48-206ENST00000464577 TESK2Q96S53 571 aa9.55□□□□□ -0.88
USP48-206ENST00000464577 MYO5CQ9NQX4 1742 aa9.54□□□□□ -0.88
USP48-206ENST00000464577 PLA2R1Q13018 1463 aa9.54□□□□□ -0.88
USP48-206ENST00000464577 EIF3AQ14152 1382 aaKnown RBP9.54□□□□□ -0.88
USP48-206ENST00000464577 PLEKHD1A6NEE1 506 aa9.54□□□□□ -0.88
USP48-206ENST00000464577 IQGAP3Q86VI3 1631 aa9.54□□□□□ -0.88
USP48-206ENST00000464577 ATP10AO60312 1499 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 ATP10BO94823 1461 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 PREX2Q70Z35 1606 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 ZNF521Q96K83 1311 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 SAMD9LQ8IVG5 1584 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 C8orf34Q49A92 452 aa9.53□□□□□ -0.88
USP48-206ENST00000464577 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.53□□□□□ -0.88
USP48-206ENST00000464577 RTN4Q9NQC3 1192 aaKnown RBP9.53□□□□□ -0.88
USP48-206ENST00000464577 DAXXQ9UER7 740 aaPredicted RBP9.53□□□□□ -0.88
USP48-206ENST00000464577 TMF1P82094 1093 aa9.52□□□□□ -0.88
USP48-206ENST00000464577 CC2D1BQ5T0F9 858 aaKnown RBP9.52□□□□□ -0.88
USP48-206ENST00000464577 RSPH4AQ5TD94 716 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms