RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 RNF17Q9BXT8 1623 aaKnown RBP34.8■■■■□ 3.16
CCDC28B-203ENST00000461819 CNTLNQ9NXG0 1405 aa34.78■■■■□ 3.16
CCDC28B-203ENST00000461819 MROH2AA6NES4 1674 aa34.77■■■■□ 3.16
CCDC28B-203ENST00000461819 PLPPR3Q6T4P5 718 aa34.76■■■■□ 3.16
CCDC28B-203ENST00000461819 C3P01024 1663 aa34.74■■■■□ 3.15
CCDC28B-203ENST00000461819 ROCK1Q13464 1354 aa34.74■■■■□ 3.15
CCDC28B-203ENST00000461819 PPP6R1Q9UPN7 881 aa34.7■■■■□ 3.15
CCDC28B-203ENST00000461819 KDM5DQ9BY66 1539 aa34.7■■■■□ 3.14
CCDC28B-203ENST00000461819 FAM135AQ9P2D6 1515 aa34.7■■■■□ 3.14
CCDC28B-203ENST00000461819 MROH1Q8NDA8 1641 aa34.68■■■■□ 3.14
CCDC28B-203ENST00000461819 ZC3H13Q5T200 1668 aaKnown RBP34.66■■■■□ 3.14
CCDC28B-203ENST00000461819 DEPDC5O75140 1603 aa34.66■■■■□ 3.14
CCDC28B-203ENST00000461819 ANKRD50Q9ULJ7 1429 aa34.65■■■■□ 3.14
CCDC28B-203ENST00000461819 CEBPAP49715 358 aaPredicted RBP34.64■■■■□ 3.14
CCDC28B-203ENST00000461819 PRDM15P57071 1507 aaPredicted RBP34.64■■■■□ 3.14
CCDC28B-203ENST00000461819 CEP152O94986 1710 aa34.63■■■■□ 3.13
CCDC28B-203ENST00000461819 WASHC2CQ9Y4E1 1318 aa34.62■■■■□ 3.13
CCDC28B-203ENST00000461819 ZMYM3Q14202 1370 aa34.6■■■■□ 3.13
CCDC28B-203ENST00000461819 ABCC3O15438 1527 aa34.59■■■■□ 3.13
CCDC28B-203ENST00000461819 GCC2Q8IWJ2 1684 aa34.57■■■■□ 3.13
CCDC28B-203ENST00000461819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.56■■■■□ 3.12
CCDC28B-203ENST00000461819 PREX1Q8TCU6 1659 aa34.54■■■■□ 3.12
CCDC28B-203ENST00000461819 KANK1Q14678 1352 aa34.54■■■■□ 3.12
CCDC28B-203ENST00000461819 CAMSAP1Q5T5Y3 1602 aa34.54■■■■□ 3.12
CCDC28B-203ENST00000461819 SETD1BQ9UPS6 1966 aaKnown RBP34.51■■■■□ 3.12
CCDC28B-203ENST00000461819 UNC13BO14795 1591 aa34.51■■■■□ 3.12
CCDC28B-203ENST00000461819 NPATQ14207 1427 aa34.47■■■■□ 3.11
CCDC28B-203ENST00000461819 PZPP20742 1482 aa34.47■■■■□ 3.11
CCDC28B-203ENST00000461819 VWDEQ8N2E2 1590 aa34.47■■■■□ 3.11
CCDC28B-203ENST00000461819 NAIPQ13075 1403 aa34.47■■■■□ 3.11
CCDC28B-203ENST00000461819 HFM1A2PYH4 1435 aa34.45■■■■□ 3.11
CCDC28B-203ENST00000461819 LMTK3Q96Q04 1460 aa34.42■■■■□ 3.1
CCDC28B-203ENST00000461819 CFAP65Q6ZU64 1925 aaKnown RBP34.42■■■■□ 3.1
CCDC28B-203ENST00000461819 LMTK2Q8IWU2 1503 aa34.4■■■■□ 3.1
CCDC28B-203ENST00000461819 UHRF1BP1Q6BDS2 1440 aa34.4■■■■□ 3.1
CCDC28B-203ENST00000461819 MYO3AQ8NEV4 1616 aa34.39■■■■□ 3.1
CCDC28B-203ENST00000461819 IQGAP3Q86VI3 1631 aa34.37■■■■□ 3.09
CCDC28B-203ENST00000461819 TET3O43151 1660 aa34.36■■■■□ 3.09
CCDC28B-203ENST00000461819 EFCAB6Q5THR3 1501 aa34.35■■■■□ 3.09
CCDC28B-203ENST00000461819 FBXO31Q5XUX0 539 aaPredicted RBP34.34■■■■□ 3.09
CCDC28B-203ENST00000461819 ARHGAP31Q2M1Z3 1444 aa34.33■■■■□ 3.09
CCDC28B-203ENST00000461819 TNRQ92752 1358 aa34.32■■■■□ 3.08
CCDC28B-203ENST00000461819 NUP155O75694 1391 aa34.31■■■■□ 3.08
CCDC28B-203ENST00000461819 ERVK-7P63135 1459 aa34.31■■■■□ 3.08
CCDC28B-203ENST00000461819 SPATA31D1Q6ZQQ2 1576 aa34.31■■■■□ 3.08
CCDC28B-203ENST00000461819 ZNF142P52746 1687 aaPredicted RBP34.31■■■■□ 3.08
CCDC28B-203ENST00000461819 CEP170BQ9Y4F5 1589 aaPredicted RBP34.27■■■■□ 3.08
CCDC28B-203ENST00000461819 HSPA2P54652 639 aa34.24■■■■□ 3.07
CCDC28B-203ENST00000461819 E9PCH4 1651 aa34.22■■■■□ 3.07
CCDC28B-203ENST00000461819 RPRD2Q5VT52 1461 aaKnown RBP34.21■■■■□ 3.07
CCDC28B-203ENST00000461819 A2ML1A8K2U0 1454 aa34.2■■■■□ 3.06
CCDC28B-203ENST00000461819 NLRP1Q9C000 1473 aa34.2■■■■□ 3.06
CCDC28B-203ENST00000461819 TRIM52Q96A61 297 aa34.18■■■■□ 3.06
CCDC28B-203ENST00000461819 SETD5Q9C0A6 1442 aa34.18■■■■□ 3.06
CCDC28B-203ENST00000461819 SYNMO15061 1565 aa34.14■■■■□ 3.06
CCDC28B-203ENST00000461819 NOS1P29475 1434 aa34.11■■■■□ 3.05
CCDC28B-203ENST00000461819 UGGT1Q9NYU2 1555 aa34.1■■■■□ 3.05
CCDC28B-203ENST00000461819 PIK3C2BO00750 1634 aa34.07■■■■□ 3.04
CCDC28B-203ENST00000461819 RAB3GAP2Q9H2M9 1393 aa34.07■■■■□ 3.04
CCDC28B-203ENST00000461819 SPHKAPQ2M3C7 1700 aa34.07■■■■□ 3.04
CCDC28B-203ENST00000461819 UBR1Q8IWV7 1749 aa34.06■■■■□ 3.04
CCDC28B-203ENST00000461819 STRCQ7RTU9 1775 aa34.06■■■■□ 3.04
CCDC28B-203ENST00000461819 ACIN1Q9UKV3 1341 aaKnown RBP34.03■■■■□ 3.04
CCDC28B-203ENST00000461819 SLC4A1APQ9BWU0 796 aaKnown RBP34.01■■■■□ 3.03
CCDC28B-203ENST00000461819 PLA2R1Q13018 1463 aa34.01■■■■□ 3.03
CCDC28B-203ENST00000461819 KDM5AP29375 1690 aaKnown RBP33.99■■■■□ 3.03
CCDC28B-203ENST00000461819 POLR1AO95602 1720 aaPredicted RBP33.98■■■■□ 3.03
CCDC28B-203ENST00000461819 THEMISQ8N1K5 641 aaPredicted RBP33.97■■■■□ 3.03
CCDC28B-203ENST00000461819 PKD2Q13563 968 aa33.96■■■■□ 3.03
CCDC28B-203ENST00000461819 SLC52A1Q9NWF4 448 aa33.96■■■■□ 3.03
CCDC28B-203ENST00000461819 ADGRB3O60242 1522 aa33.95■■■■□ 3.03
CCDC28B-203ENST00000461819 IDI1Q13907 227 aa33.95■■■■□ 3.03
CCDC28B-203ENST00000461819 STAG3Q9UJ98 1225 aa33.95■■■■□ 3.03
CCDC28B-203ENST00000461819 MYO5BQ9ULV0 1848 aa33.93■■■■□ 3.02
CCDC28B-203ENST00000461819 TRPM2O94759 1503 aa33.9■■■■□ 3.02
CCDC28B-203ENST00000461819 PTPRTO14522 1441 aa33.9■■■■□ 3.02
CCDC28B-203ENST00000461819 TRIM26Q12899 539 aaPredicted RBP33.89■■■■□ 3.02
CCDC28B-203ENST00000461819 MPHOSPH9Q99550 1183 aa33.89■■■■□ 3.02
CCDC28B-203ENST00000461819 NCKAP5LQ9HCH0 1330 aa33.88■■■■□ 3.01
CCDC28B-203ENST00000461819 DMRT2Q9Y5R5 561 aa33.86■■■■□ 3.01
CCDC28B-203ENST00000461819 TMEM131LA2VDJ0 1609 aa33.86■■■■□ 3.01
CCDC28B-203ENST00000461819 CLTCL1P53675 1640 aa33.85■■■■□ 3.01
CCDC28B-203ENST00000461819 HRCP23327 699 aa33.84■■■■□ 3.01
CCDC28B-203ENST00000461819 SLIT1O75093 1534 aa33.84■■■■□ 3.01
CCDC28B-203ENST00000461819 NEURL4Q96JN8 1562 aa33.82■■■■□ 3
CCDC28B-203ENST00000461819 CHGAP10645 457 aaKnown RBP33.82■■■■□ 3
CCDC28B-203ENST00000461819 FOXD1Q16676 465 aa33.82■■■■□ 3
CCDC28B-203ENST00000461819 ANKLE2Q86XL3 938 aa33.82■■■■□ 3
CCDC28B-203ENST00000461819 KIF1BO60333 1816 aa33.81■■■■□ 3
CCDC28B-203ENST00000461819 ARHGAP23Q9P227 1491 aa33.81■■■■□ 3
CCDC28B-203ENST00000461819 TMEM2Q9UHN6 1383 aa33.78■■■■□ 3
CCDC28B-203ENST00000461819 SCAF11Q99590 1463 aaKnown RBP33.76■■■■□ 3
CCDC28B-203ENST00000461819 IQGAP1P46940 1657 aa33.76■■■□□ 2.99
CCDC28B-203ENST00000461819 EID1Q9Y6B2 187 aa33.74■■■□□ 2.99
CCDC28B-203ENST00000461819 NPHP4O75161 1426 aaPredicted RBP33.71■■■□□ 2.99
CCDC28B-203ENST00000461819 MED14O60244 1454 aa33.71■■■□□ 2.99
CCDC28B-203ENST00000461819 TXNDC2Q86VQ3 553 aa33.71■■■□□ 2.99
CCDC28B-203ENST00000461819 CCDC144AA2RUR9 1427 aa33.69■■■□□ 2.98
CCDC28B-203ENST00000461819 LTKP29376 864 aa33.67■■■□□ 2.98
CCDC28B-203ENST00000461819 RIMS2Q9UQ26 1411 aa33.67■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms