RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 BRPF3Q9ULD4 1205 aa26.93■■□□□ 1.9
SHOX2-203ENST00000441443 ATP10BO94823 1461 aa26.92■■□□□ 1.9
SHOX2-203ENST00000441443 ANKRD30AQ9BXX3 1397 aa26.92■■□□□ 1.9
SHOX2-203ENST00000441443 MS4A1P11836 297 aa26.89■■□□□ 1.89
SHOX2-203ENST00000441443 KDM2AQ9Y2K7 1162 aa26.89■■□□□ 1.89
SHOX2-203ENST00000441443 NUP155O75694 1391 aa26.88■■□□□ 1.89
SHOX2-203ENST00000441443 LRPPRCP42704 1394 aaKnown RBP26.88■■□□□ 1.89
SHOX2-203ENST00000441443 PLIN1O60240 522 aa26.87■■□□□ 1.89
SHOX2-203ENST00000441443 ANKRD50Q9ULJ7 1429 aa26.86■■□□□ 1.89
SHOX2-203ENST00000441443 SLC4A3P48751 1232 aa26.85■■□□□ 1.89
SHOX2-203ENST00000441443 KIF15Q9NS87 1388 aa26.84■■□□□ 1.89
SHOX2-203ENST00000441443 PZPP20742 1482 aa26.84■■□□□ 1.89
SHOX2-203ENST00000441443 CDCA7LQ96GN5 454 aa26.84■■□□□ 1.89
SHOX2-203ENST00000441443 MYBBP1AQ9BQG0 1328 aaKnown RBP26.83■■□□□ 1.89
SHOX2-203ENST00000441443 GSE1Q14687 1217 aa26.83■■□□□ 1.89
SHOX2-203ENST00000441443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.82■■□□□ 1.88
SHOX2-203ENST00000441443 ARID4BQ4LE39 1312 aaPredicted RBP26.82■■□□□ 1.88
SHOX2-203ENST00000441443 ITSN2Q9NZM3 1697 aa26.81■■□□□ 1.88
SHOX2-203ENST00000441443 BRD4O60885 1362 aaPredicted RBP26.8■■□□□ 1.88
SHOX2-203ENST00000441443 CARD11Q9BXL7 1154 aa26.8■■□□□ 1.88
SHOX2-203ENST00000441443 C9orf84Q5VXU9 1444 aa26.8■■□□□ 1.88
SHOX2-203ENST00000441443 NFKBIBQ15653 356 aa26.79■■□□□ 1.88
SHOX2-203ENST00000441443 MBD5Q9P267 1494 aa26.79■■□□□ 1.88
SHOX2-203ENST00000441443 ROCK2O75116 1388 aaKnown RBP26.78■■□□□ 1.88
SHOX2-203ENST00000441443 KDM5CP41229 1560 aa26.78■■□□□ 1.88
SHOX2-203ENST00000441443 DDRGK1Q96HY6 314 aa26.77■■□□□ 1.88
SHOX2-203ENST00000441443 ABCA8O94911 1581 aa26.77■■□□□ 1.88
SHOX2-203ENST00000441443 ST20-MTHFSA0A0A6YYL1 179 aa26.76■■□□□ 1.88
SHOX2-203ENST00000441443 KIAA1107Q9UPP5 1409 aa26.76■■□□□ 1.88
SHOX2-203ENST00000441443 RALBP1Q15311 655 aa26.75■■□□□ 1.87
SHOX2-203ENST00000441443 CRBNQ96SW2 442 aa26.75■■□□□ 1.87
SHOX2-203ENST00000441443 FRAT1Q92837 279 aaPredicted RBP26.74■■□□□ 1.87
SHOX2-203ENST00000441443 ABCC10Q5T3U5 1492 aa26.72■■□□□ 1.87
SHOX2-203ENST00000441443 RGL3Q3MIN7 710 aa26.71■■□□□ 1.87
SHOX2-203ENST00000441443 DCAF11Q8TEB1 546 aa26.71■■□□□ 1.87
SHOX2-203ENST00000441443 CDC42BPAQ5VT25 1732 aa26.7■■□□□ 1.87
SHOX2-203ENST00000441443 EIF5BO60841 1220 aaKnown RBP26.7■■□□□ 1.86
SHOX2-203ENST00000441443 PDE3BQ13370 1112 aa26.7■■□□□ 1.86
SHOX2-203ENST00000441443 DAXXQ9UER7 740 aaPredicted RBP26.69■■□□□ 1.86
SHOX2-203ENST00000441443 ADCY10Q96PN6 1610 aa26.68■■□□□ 1.86
SHOX2-203ENST00000441443 ADGRL2O95490 1459 aa26.67■■□□□ 1.86
SHOX2-203ENST00000441443 NLRP13Q86W25 1043 aa26.67■■□□□ 1.86
SHOX2-203ENST00000441443 ADGBQ8N7X0 1667 aa26.65■■□□□ 1.86
SHOX2-203ENST00000441443 C20orf194Q5TEA3 1177 aa26.65■■□□□ 1.86
SHOX2-203ENST00000441443 KTN1Q86UP2 1357 aaKnown RBP26.62■■□□□ 1.85
SHOX2-203ENST00000441443 RALGAPBQ86X10 1494 aa26.61■■□□□ 1.85
SHOX2-203ENST00000441443 CHD1O14646 1710 aa26.61■■□□□ 1.85
SHOX2-203ENST00000441443 ERCC6L2Q5T890 1561 aa26.6■■□□□ 1.85
SHOX2-203ENST00000441443 CROCC2H7BZ55 1655 aa26.59■■□□□ 1.85
SHOX2-203ENST00000441443 FRAT2O75474 233 aaPredicted RBP26.57■■□□□ 1.84
SHOX2-203ENST00000441443 CC2D1BQ5T0F9 858 aaKnown RBP26.57■■□□□ 1.84
SHOX2-203ENST00000441443 ARHGAP5Q13017 1502 aa26.57■■□□□ 1.84
SHOX2-203ENST00000441443 UHRF1BP1Q6BDS2 1440 aa26.57■■□□□ 1.84
SHOX2-203ENST00000441443 UBE2Q2Q8WVN8 375 aa26.57■■□□□ 1.84
SHOX2-203ENST00000441443 PARD3Q8TEW0 1356 aa26.55■■□□□ 1.84
SHOX2-203ENST00000441443 CCDC141Q6ZP82 1450 aa26.53■■□□□ 1.84
SHOX2-203ENST00000441443 KDM2BQ8NHM5 1336 aa26.52■■□□□ 1.84
SHOX2-203ENST00000441443 SYCP2Q9BX26 1530 aa26.51■■□□□ 1.83
SHOX2-203ENST00000441443 SHANK2Q9UPX8 1470 aa26.51■■□□□ 1.83
SHOX2-203ENST00000441443 C8orf34Q49A92 452 aa26.51■■□□□ 1.83
SHOX2-203ENST00000441443 SAMD9LQ8IVG5 1584 aa26.5■■□□□ 1.83
SHOX2-203ENST00000441443 FAM161AQ3B820 660 aa26.5■■□□□ 1.83
SHOX2-203ENST00000441443 PER1O15534 1290 aaPredicted RBP26.48■■□□□ 1.83
SHOX2-203ENST00000441443 RGS3P49796 1198 aa26.48■■□□□ 1.83
SHOX2-203ENST00000441443 RSPH4AQ5TD94 716 aa26.47■■□□□ 1.83
SHOX2-203ENST00000441443 CENPQQ7L2Z9 268 aaPredicted RBP26.47■■□□□ 1.83
SHOX2-203ENST00000441443 E9PCH4 1651 aa26.46■■□□□ 1.83
SHOX2-203ENST00000441443 TTC37Q6PGP7 1564 aa26.46■■□□□ 1.83
SHOX2-203ENST00000441443 CDC42BPBQ9Y5S2 1711 aa26.46■■□□□ 1.83
SHOX2-203ENST00000441443 NBPF1Q3BBV0 1214 aa26.44■■□□□ 1.82
SHOX2-203ENST00000441443 CCDC144AA2RUR9 1427 aa26.42■■□□□ 1.82
SHOX2-203ENST00000441443 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.42■■□□□ 1.82
SHOX2-203ENST00000441443 PLEKHH2Q8IVE3 1493 aa26.41■■□□□ 1.82
SHOX2-203ENST00000441443 EFCAB2Q5VUJ9 269 aa26.41■■□□□ 1.82
SHOX2-203ENST00000441443 BLMP54132 1417 aaPredicted RBP26.41■■□□□ 1.82
SHOX2-203ENST00000441443 AFAP1Q8N556 730 aa26.4■■□□□ 1.82
SHOX2-203ENST00000441443 FAM135AQ9P2D6 1515 aa26.4■■□□□ 1.82
SHOX2-203ENST00000441443 PREX2Q70Z35 1606 aa26.39■■□□□ 1.82
SHOX2-203ENST00000441443 ADAMTS8Q9UP79 889 aa26.39■■□□□ 1.81
SHOX2-203ENST00000441443 ARHGEF12Q9NZN5 1544 aa26.38■■□□□ 1.81
SHOX2-203ENST00000441443 ARHGEF5Q12774 1597 aa26.38■■□□□ 1.81
SHOX2-203ENST00000441443 PANK3Q9H999 370 aa26.38■■□□□ 1.81
SHOX2-203ENST00000441443 ABCC2Q92887 1545 aa26.36■■□□□ 1.81
SHOX2-203ENST00000441443 FAM43AQ8N2R8 423 aa26.36■■□□□ 1.81
SHOX2-203ENST00000441443 DUSP27Q5VZP5 1158 aa26.33■■□□□ 1.81
SHOX2-203ENST00000441443 RSPH6AQ9H0K4 717 aa26.32■■□□□ 1.8
SHOX2-203ENST00000441443 ZMYM4Q5VZL5 1548 aa26.32■■□□□ 1.8
SHOX2-203ENST00000441443 POGKQ9P215 609 aa26.31■■□□□ 1.8
SHOX2-203ENST00000441443 DISP3Q9P2K9 1392 aa26.31■■□□□ 1.8
SHOX2-203ENST00000441443 PLEKHH1Q9ULM0 1364 aa26.3■■□□□ 1.8
SHOX2-203ENST00000441443 SPAG9O60271 1321 aaKnown RBP26.29■■□□□ 1.8
SHOX2-203ENST00000441443 TRAPPC8Q9Y2L5 1435 aa26.28■■□□□ 1.8
SHOX2-203ENST00000441443 SHROOM2Q13796 1616 aa26.27■■□□□ 1.8
SHOX2-203ENST00000441443 KDM5DQ9BY66 1539 aa26.27■■□□□ 1.8
SHOX2-203ENST00000441443 PLA2R1Q13018 1463 aa26.25■■□□□ 1.79
SHOX2-203ENST00000441443 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.25■■□□□ 1.79
SHOX2-203ENST00000441443 TESK2Q96S53 571 aa26.25■■□□□ 1.79
SHOX2-203ENST00000441443 PLCH2O75038 1416 aa26.24■■□□□ 1.79
SHOX2-203ENST00000441443 INSRP06213 1382 aa26.24■■□□□ 1.79
SHOX2-203ENST00000441443 GOLGA2Q08379 1002 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms