RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 RNF17Q9BXT8 1623 aaKnown RBP12.08□□□□□ -0.48
HPS4-206ENST00000439453 EIF2AK4Q9P2K8 1649 aaKnown RBP12.08□□□□□ -0.48
HPS4-206ENST00000439453 A2MP01023 1474 aa12.07□□□□□ -0.48
HPS4-206ENST00000439453 ADGRL2O95490 1459 aa12.07□□□□□ -0.48
HPS4-206ENST00000439453 SPAG9O60271 1321 aaKnown RBP12.07□□□□□ -0.48
HPS4-206ENST00000439453 DEPDC5O75140 1603 aa12.06□□□□□ -0.48
HPS4-206ENST00000439453 MROH2AA6NES4 1674 aa12.06□□□□□ -0.48
HPS4-206ENST00000439453 C3P01024 1663 aa12.06□□□□□ -0.48
HPS4-206ENST00000439453 DDX10Q13206 875 aaKnown RBP12.05□□□□□ -0.48
HPS4-206ENST00000439453 CLTCQ00610 1675 aaKnown RBP12.04□□□□□ -0.48
HPS4-206ENST00000439453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.04□□□□□ -0.48
HPS4-206ENST00000439453 RSPH4AQ5TD94 716 aa12.03□□□□□ -0.48
HPS4-206ENST00000439453 ITGAEP38570 1179 aa12.02□□□□□ -0.48
HPS4-206ENST00000439453 RAB3GAP2Q9H2M9 1393 aa12.02□□□□□ -0.48
HPS4-206ENST00000439453 DUOX2Q9NRD8 1548 aa12.02□□□□□ -0.49
HPS4-206ENST00000439453 PTPRMP28827 1452 aa12.02□□□□□ -0.49
HPS4-206ENST00000439453 CEP152O94986 1710 aa12.01□□□□□ -0.49
HPS4-206ENST00000439453 DHX29Q7Z478 1369 aaKnown RBP12.01□□□□□ -0.49
HPS4-206ENST00000439453 GCC2Q8IWJ2 1684 aa12.01□□□□□ -0.49
HPS4-206ENST00000439453 PPP1R15AO75807 674 aaPredicted RBP12.01□□□□□ -0.49
HPS4-206ENST00000439453 NCOA1Q15788 1441 aa12□□□□□ -0.49
HPS4-206ENST00000439453 MSH5O43196 834 aa12□□□□□ -0.49
HPS4-206ENST00000439453 PRDM15P57071 1507 aaPredicted RBP12□□□□□ -0.49
HPS4-206ENST00000439453 ZC3H13Q5T200 1668 aaKnown RBP12□□□□□ -0.49
HPS4-206ENST00000439453 CCER2I3L3R5 266 aa11.99□□□□□ -0.49
HPS4-206ENST00000439453 VWDEQ8N2E2 1590 aa11.99□□□□□ -0.49
HPS4-206ENST00000439453 TRIM52Q96A61 297 aa11.99□□□□□ -0.49
HPS4-206ENST00000439453 UNC13BO14795 1591 aa11.98□□□□□ -0.49
HPS4-206ENST00000439453 ERBINQ96RT1 1412 aa11.97□□□□□ -0.49
HPS4-206ENST00000439453 FAM135AQ9P2D6 1515 aa11.97□□□□□ -0.49
HPS4-206ENST00000439453 KDM5DQ9BY66 1539 aa11.97□□□□□ -0.49
HPS4-206ENST00000439453 KIF15Q9NS87 1388 aa11.96□□□□□ -0.49
HPS4-206ENST00000439453 ERICH6Q7L0X2 663 aa11.96□□□□□ -0.49
HPS4-206ENST00000439453 CAMSAP1Q5T5Y3 1602 aa11.96□□□□□ -0.49
HPS4-206ENST00000439453 ROCK1Q13464 1354 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 SETD5Q9C0A6 1442 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 ANP32CO43423 234 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 ABCC3O15438 1527 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 SIN3AQ96ST3 1273 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 ARID4BQ4LE39 1312 aaPredicted RBP11.95□□□□□ -0.5
HPS4-206ENST00000439453 PREX1Q8TCU6 1659 aa11.95□□□□□ -0.5
HPS4-206ENST00000439453 FANCIQ9NVI1 1328 aa11.94□□□□□ -0.5
HPS4-206ENST00000439453 FAM50AQ14320 339 aaKnown RBP11.94□□□□□ -0.5
HPS4-206ENST00000439453 TSPY4P0CV99 314 aa11.94□□□□□ -0.5
HPS4-206ENST00000439453 TSPY10P0CW01 314 aa11.94□□□□□ -0.5
HPS4-206ENST00000439453 MLECQ14165 292 aa11.92□□□□□ -0.5
HPS4-206ENST00000439453 MYT1LQ9UL68 1186 aa11.92□□□□□ -0.5
HPS4-206ENST00000439453 ZNF142P52746 1687 aaPredicted RBP11.92□□□□□ -0.5
HPS4-206ENST00000439453 ANKRD30AQ9BXX3 1397 aa11.92□□□□□ -0.5
HPS4-206ENST00000439453 MYO3AQ8NEV4 1616 aa11.92□□□□□ -0.5
HPS4-206ENST00000439453 CHIC2Q9UKJ5 165 aa11.92□□□□□ -0.5
HPS4-206ENST00000439453 IQGAP3Q86VI3 1631 aa11.91□□□□□ -0.5
HPS4-206ENST00000439453 TIMELESSQ9UNS1 1208 aa11.91□□□□□ -0.5
HPS4-206ENST00000439453 LMTK2Q8IWU2 1503 aa11.91□□□□□ -0.5
HPS4-206ENST00000439453 HIRIP3Q9BW71 556 aaPredicted RBP11.91□□□□□ -0.5
HPS4-206ENST00000439453 RRP7BPQ9NSQ0 103 aa11.91□□□□□ -0.5
HPS4-206ENST00000439453 LMTK3Q96Q04 1460 aa11.9□□□□□ -0.5
HPS4-206ENST00000439453 CNTLNQ9NXG0 1405 aa11.9□□□□□ -0.5
HPS4-206ENST00000439453 NAIPQ13075 1403 aa11.89□□□□□ -0.51
HPS4-206ENST00000439453 CFAP65Q6ZU64 1925 aaKnown RBP11.89□□□□□ -0.51
HPS4-206ENST00000439453 SETD1BQ9UPS6 1966 aaKnown RBP11.89□□□□□ -0.51
HPS4-206ENST00000439453 TET3O43151 1660 aa11.89□□□□□ -0.51
HPS4-206ENST00000439453 ANKRD50Q9ULJ7 1429 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 E9PCH4 1651 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 KIF3BO15066 747 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 EFCAB6Q5THR3 1501 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 SPATA31D1Q6ZQQ2 1576 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 PZPP20742 1482 aa11.88□□□□□ -0.51
HPS4-206ENST00000439453 ZMYM3Q14202 1370 aa11.87□□□□□ -0.51
HPS4-206ENST00000439453 HFM1A2PYH4 1435 aa11.87□□□□□ -0.51
HPS4-206ENST00000439453 CEBPAP49715 358 aaPredicted RBP11.86□□□□□ -0.51
HPS4-206ENST00000439453 STRCQ7RTU9 1775 aa11.86□□□□□ -0.51
HPS4-206ENST00000439453 GGT6Q6P531 493 aa11.85□□□□□ -0.51
HPS4-206ENST00000439453 NPATQ14207 1427 aa11.85□□□□□ -0.51
HPS4-206ENST00000439453 SYNMO15061 1565 aa11.85□□□□□ -0.51
HPS4-206ENST00000439453 PPP6R1Q9UPN7 881 aa11.85□□□□□ -0.51
HPS4-206ENST00000439453 ARHGAP31Q2M1Z3 1444 aa11.84□□□□□ -0.51
HPS4-206ENST00000439453 IRX6P78412 446 aaPredicted RBP11.83□□□□□ -0.52
HPS4-206ENST00000439453 ERVK-7P63135 1459 aa11.83□□□□□ -0.52
HPS4-206ENST00000439453 PIK3C2BO00750 1634 aa11.83□□□□□ -0.52
HPS4-206ENST00000439453 CEP170BQ9Y4F5 1589 aaPredicted RBP11.82□□□□□ -0.52
HPS4-206ENST00000439453 UBR1Q8IWV7 1749 aa11.82□□□□□ -0.52
HPS4-206ENST00000439453 MYO5BQ9ULV0 1848 aa11.82□□□□□ -0.52
HPS4-206ENST00000439453 HNRNPUQ00839 825 aaKnown RBP eCLIP11.82□□□□□ -0.52
HPS4-206ENST00000439453 AEBP2Q6ZN18 517 aaPredicted RBP11.81□□□□□ -0.52
HPS4-206ENST00000439453 SPHKAPQ2M3C7 1700 aa11.81□□□□□ -0.52
HPS4-206ENST00000439453 KDM5AP29375 1690 aaKnown RBP11.8□□□□□ -0.52
HPS4-206ENST00000439453 ERICH6BQ5W0A0 696 aa11.8□□□□□ -0.52
HPS4-206ENST00000439453 POLR1AO95602 1720 aaPredicted RBP11.79□□□□□ -0.52
HPS4-206ENST00000439453 WASHC2CQ9Y4E1 1318 aa11.78□□□□□ -0.52
HPS4-206ENST00000439453 NOS1P29475 1434 aa11.78□□□□□ -0.52
HPS4-206ENST00000439453 FBXO31Q5XUX0 539 aaPredicted RBP11.78□□□□□ -0.52
HPS4-206ENST00000439453 RPRD2Q5VT52 1461 aaKnown RBP11.78□□□□□ -0.52
HPS4-206ENST00000439453 PPP4R2Q9NY27 417 aa11.78□□□□□ -0.52
HPS4-206ENST00000439453 DEKP35659 375 aaKnown RBP11.77□□□□□ -0.52
HPS4-206ENST00000439453 TONSLQ96HA7 1378 aa11.77□□□□□ -0.53
HPS4-206ENST00000439453 A2ML1A8K2U0 1454 aa11.76□□□□□ -0.53
HPS4-206ENST00000439453 UHRF1BP1Q6BDS2 1440 aa11.76□□□□□ -0.53
HPS4-206ENST00000439453 NEURL4Q96JN8 1562 aa11.75□□□□□ -0.53
HPS4-206ENST00000439453 UGGT1Q9NYU2 1555 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms